Plasma membrane Na$^{＋}$-K$^{＋}$ ATPase (pump) is an essential component to maintain asymmetrical ion distribution across cell membrane. The Na$^{＋}$-K$^{＋}$ ATPase was discovered by Jens C. Skou in 1957 and since then physiological and biochemical properties of the enzyme have been extensively studied. Jens C. Skou was awarded the 1997 Nobel Prize in chemistry for his discovery of the Na $^{＋}$ - $K^{＋}$ ATPase.(omitted)

기계학습(maching learning)은 경험을 통한 테이터 관측으로부터 스스로 성능을 향상할 수 있는 컴퓨터를 연구하는 인공지능(artificial intelligence)의 한 연구분야이다. 최근 들어 기계학습은 Bioinformatics 분야에서 생명과학 데이터마이닝을 위한 하나의 핵심기술로 부상하고 있다.(중략)

Genome project is a research for discovering genomic information. Human genome sequence, under the title of HGP(human genome project), was drafted successfully at the end of June, 2000. And the academic world soon predicted that related research field would be activated and since then bioinformatics has been in the spotlight.(omitted)

Cyclic nucleotide phosphodiesterases (PDEs) regulate physiological processes by degrading ubiquitous intracellular second messengers, cAMP or cGMP. The first crystal structure of PDE4D catalytic domain and a bound inhibitor, zardaverine, was determined. Zardaverine binds to a highly conserved pocket that includes the catalytic metal binding site.(omitted)

The major histocompatibility complex (MHC) is an important susceptibility locus for many human autoimmune diseases. The structural and functional properties of HLA-DR molecules that are associated with susceptibility to several autoimmune diseases, such as rheumatoid arthritis and multiple sclerosis, have been defined.(omitted)

Nitrogenase, comprised of the MoFe and Fe proteins, catalyzes the reduction of dinitrogen to ammonia at ambient temperature and pressure. The MoFe protein contains two metal centers, the P-cluster (Fe8S7-8) and the FeMo-cofactor (Fe7S9：homocitrate), the substrate binding site. Despite the availability of the crystal structure of the MoFe protein, suprisingly little is known about the molecular details of catalysis at the active site, and no small-molecule substrate or inhibitor had ever been shown to directly interact with a protein-bound cluster of the functioning enzyme, until our electron-nuclear double resonance(ENDOR) study of CO-inhibited nitrogenase.(omitted)

The gating kinetics of an inward-rectifier K$\^$＋/ channel, ROMK2 (Kir1.lb), were described by a model having one open state and two closed states. The long closed state was abolished by EDTA, suggesting that it was due to block by divalent cations. These closures exhibit a biphasic voltage-dependence, implying that the divalent blockers can permeate the channel.(omitted)

The inflow of Ca$\^$2＋/ through voltage-activated T-type calcium channels (T-channels) regulates a variety of cellular functions including neuronal excitability, cardiac pacemaker activity, hormone secretion, smooth muscle contraction, and fertilization. Not only are T-channels enormously important for the normal operation of cells, they also playa critical role in pathophysiological conditions such as cardiac hypertrophy and absence epilepsy.(omitted)

In neurons and some endocrine cells, $Ca^{2＋}$ plays a pivotal role as the final signal for rapid stimulus-evoked release of neurotransmitters and hormones. In contrast, intracellular signals other than $Ca^{2＋}$, such as protein A and C, were mor emphasized the exocytosis in non-neuronal cells. We questioned if the regulatory mechanisms of exocytosis are fundamentally different between cell types.(omitted)

The mechanism of how cholelithiasis increases the risk of acute pancreatitis remains obscure. When gallstones obstruct the lower biliary tract, bile acids can enter the pancreas either by luminal diffusion or by interstitial leakage. Here we provide the first evidence that bile acids can be transported into pancreatic acinar cells through the membrane transporters and induce cell death by impairing intracellular Ca$\^$2+/ signals.(omitted)

The goal of radiation therapy is to maximize the tumor dose and to minimize the dose of normal tissue. In order to achieve this goal, the new radiation therapy techniques such as three dimensional conformal therapy or intensity modulated radiation therapy has been developed and tried to clinical application. The relationship between radiation dose and normal tissue response is an interesting subject in the radiation therapy field.(omitted)

Peptidoglycan is an extensively cross-linked polymer essential for the integrity of the bacterial cell wall. Many antibiotics act by disruption of its biosynthesis and assembly, several are targeted against the cytoplasmic enzymes that synthesize the key intermediate UDP-N-acetylmuramyl pentapeptide. One such drug is fosfomycin, which inactivates the first enzymes in this pathway, UDP-N-acetylglucosamine enopyruvyl transferase (murZ).(omitted)

In response to fungal invasion and other signals, plants accumulate a number of proteins that are involved in defense against pathogens. Osmotin is a 24 kDa protein belonging to the pathogenesis-related (PR) protein, a component of the hypersensitive response in leaves of tobacco plants exposed to tobacco mosaic virus.(omitted)

The native forms of common globular proteins are in their most stable state but the native forms of plasma serpins (serine protease inhibitors) show high-energy state interactions. The high-energy state strain of a ${\alpha}$$_1$-antitrypsin, a prototype serpin, is distributed throughout the whole molecule, but the strain that regulates the function directly appears to be localized in the region where the reactive site loop is inserted during complex formation with a target protease.(omitted)

$\alpha$$_1$-Antitrypsin is a member of the serine protease inhibitor (serpin) family that share a common tertiary structure. The reactive site loop (RSL) of serpins is exposed at one end of the molecule for protease binding. Upon cleavage by a target protease, the RSL is inserted into the major $\beta$-sheet A, which is a necessary process for formation of a tight inhibitory complex.(omitted)

To understand the functional roles of the neuron-specific $\beta$-subunit of large-conductance calcium-activated potassium ($BK_{Ca}$) channel, we isolate the full-length complementary DNA of $\beta$4-subunit from rat brain library and investigated its effects on the function of $\alpha$-subunit (Slo). The deduced amino acid sequence of rat $\beta$4 (r$\beta$4), 210 amino acids in length, was closely related to those of $\beta$4 subunits in other mammalian species but showed only a limited sequence homology to the other $\beta$-subunits, $\beta$1 to $\beta$3.(omitted)d)

In our previous study (Soh and Park, 2001), we proposed that the inwardly rectifying current-voltage (I-V) relationship of small-conductance $Ca^{2＋}$-activated $K^{＋}$ channels (S $K_{Ca}$ channels) is the result of voltage-dependent blockade of $K^{＋}$ currents by intracellular divalent cations. We expressed a cloned S $K_{Ca}$ channel, rSK2, in Xenopus oocytes and further characterized the nature of the divalent cation-binding site by electrophysiological means.(omitted)

Oxidative stress has been considered as a major cause of inducing cell damage, but it is recently recognized that mild oxidative stress or receptor-mediated production of ROS contributes to the regulation of various cellular functions. Several ion channels, such as L-type $Ca^{2＋}$ channels and $Ca^{2＋}$-activated $K^{＋}$ channels, have been shown to be regulated by oxidation of thiol group in their structure, and are suggested to be involved in ROS-sensitive cellular signaling.(omitted)

The large conductance $Ca^{2＋}$ -activated $K^{＋}$ channels ($BK_{Ca}$) in vascular smooth muscle have been considered to function as a negative feedback in pressure-induced vasoconstriction. In the present study, the function of cytoskeletons in the regulation of $BK_{Ca}$ and its stretch sensitivity was investigated. Using the inside-out patch clamp technique, we recorded single channel activities of $BK_{Ca}$ with 150 mM KCl in the bath solution (pCa=6.5).(omitted)itted)

In the present study, we investigated effects of extracellular zinc (Zn$\^$2＋/) on T-type Ca$\^$2＋/ channel isoforms (${\alpha}$lG, ${\alpha}$lH, and ${\alpha}$lI) stably expressed in HEK 293 cells. Ca$\^$2＋/ currents were measured using 10 mM Ca$\^$2＋/ as a charge carrier under whole cell-ruptured patch configuration. Zn$\^$2＋/ blocked the ${\alpha}$lH currents with a 100- and 200-fold higher potency (IC$\sub$50/ = 2.5 ${\mu}$M) when compared with those for blockade of the ${\alpha}$1G and ${\alpha}$1I currents, respectively.(omitted)

The Na$^{＋}$-Ca$^{2＋}$ exchanger (NCX) is known to playa critical role in the regulation of intracellular $Ca^{2＋}$ in many tissues and cells. Three isoforms have been cloned (NCXl, NCX2, NCX3). Among the isoforms, NCX2 and NCX3 are expressed at high levels in brain and in a few other tissues. But the differential properties of the isoforms are not yet clearly established.(omitted)

Whole-cell recordings from adult rat sympathetic neurons demonstrate that calcium current is comprised of at least three types, N, L '||'&'||' R. We are using cell-attached patch recording to identify the single calcium channels that underlie these macroscopic currents. Single channels were resolved the presence of 100 mM Ba$\^$2＋/ and l${\mu}$M BayK 8644 over the voltage range -40 to $\^$＋/50 mV.(omitted)

Microglia are known to have an important function as brain macrophage during immunological processes, oncogenesis, and regeneration in the central nervous system (CNS). A wide variety of ion channels have been identified and characterized in microglia including inward rectifier $K^{＋}$ channel (Kir), voltage dependent $K^{＋}$ channel (Kv), $Ca^{2＋}$-release activated $Ca^{2＋}$ channel (CRAC).(omitted)

Altered intracellular $Ca^{2＋}$ homeostasis is presumably the primary mechanism of the diastolic impairment in diabetic cardiomyopathy. However, causal relations of numerous environmental changes observed in the diabetic heart have been left unresolved. In the present study, we sought to establish an in vitro model of diabetic cardiomyopathy using H9c2 cardiac myocyte cell line.(omitted)

Tolaasin, a pore-forming 1.9 kDa peptide toxin released by Pseudomonas tolaasii, produces brown blotch disease on cultivated oyster mushrooms. To investigate the mechanism of tolaasin-induced cell disruption, we studied the effect of temperature on the hemolytic process. In the kinetic analyses, single exponential function was fitted to the data obtained from temperature-dependent velocity of hemolysis(1/t$\_$50/, implying that there is a major time-limiting factor on the temperature-dependent hemolysis.(omitted)

Salt accumulation in agricultural soils reduces the growth and productivity of crops. Although scientists have been studied the impacts of salinity on plants, the physiological mechanism of adaptation to salinity has not been well understood. Practically, salinity in irrigated soil of green and glass houses keeps increasing in Korea by the massive application of nitrogen fertilizer.(omitted)

Basically all cells have the recovery mechanisms from the shift of intracellular pH (pHi). Many mechanisms were found and characterized. Generally the recovery mechanisms from acidosis are Na$\^$＋/-dependent, such as Na$\^$＋/-H$\^$＋/ exchange and Na$\^$＋/-HCO$_3$-symport. The recovery mechanism from alkalosis are Cl-dependent, such as Cl$\^$-/-HCO$_3$-exchange and Cal$\^$-/-OH$\^$-/ exchange.(omitted)

Extracellular ATP regulates a wide range of cellular function including the growth of prostate gland. Purinoceptors (ATP receptors) are divided into P2X (ligand-gated ion channels) and P2Y (G-protein-coupled receptor) subfamilies. In the present study, we investigated the types of purinoceptors in rat prostate neuroendocrine (RPNE) cells using whole-cell patch clamp technique, intracellular $Ca^{2+}$ measurement and RT-PCR analysis.(omitted)d)

Cdk5, a neuronal Cdc2-like kinase, exhibits a variety of functions in neuronal differentiation and neurocytoskeleton dynamics as well as neuronal degeneration and cell death. However, its role in retinoic acid (RA)-induced differentiation has not been reported yet. We newly found that RA treatment of SK-N-BE(2)C, human neuroblastoma, increased expression of Cdk5 concomitantly with a neuronal specific activator, p35.(omitted)

Nucleoredoxin (NRX) is a 435-amino-acid redox protein with similarity to TRX but with a -Trp-Cys-Pro-Pro-Cys- catalytic site (instead of - Trp-Cys-Gly-Pro-Cys-). It has been cloned from a mouse YAC library and localized to the nucleus In this study, amino acid sequences of rat and human NRX were determined by RT-PCR and genomic PCR. (omitted)

Glutathione (GSH) is most prevalent reducing thiols in eukaryotic cells and known that participates in many cellular processes. It was found that total amount of glutathione and the ratio of reduced to oxidized glutathione during development of Dictyostelium discoideum increase at the initial stage of the aggregation of amoeba.(omitted)

Mutants blocked at the earliest stages of morphological development in Streptomyces species are called bld mutants. We have cloned bldB gene ORF from Slividans. Genomic Southern blot analysis for main strains S.lividans, S.seoulensis, S.coelicolor A3(2), and S.griseus indicated that bldB gene is conserved in all main Streptomyces strains.(omitted)

The heterologous expression of sodN gene from Streptomyces seoulensis in Streptomyces lividans together with the gel filtration and sedimentation equilibrim data indicated that the quaternary structure of NiSOD is homohexamer, which is novel among SODs, not the previously reported homotetramer. The EPR spectrum of $^{61}$ Ni (I = 3/2) substituted NiSOD showed a clear resolved hyperfine structure at g=2.016, unambiguously identifying that the EPR signal from NiSOD is due to Ni.(omitted)

PpsR from the facultative photohetrotroph Rhodobacter sphaeroides is involved in repression of photo system gene expression. SDS-PAGE analysis showed that some portion of PpsR is oxidized so that intra- or inter-disulfide bond is formed between the two cysteins in each subunit. The disulfide bond was reduced by dithiothreitol and the binding activity to puc promoter region was increased.(omitted)

It has been known that ATM plays a central role in response of cells to ionizing radiation by enhancing DNA repair. We have investigated the feasibility of increasing radiosensitivity of tumor cells with the use of ATM inhibitors such as caffeine, pentoxifylline and wortmannin. Human colorecta1 cancer RKO.C cells and RKO-ATM cells (RKO cells overexpressing ATM) were used in the present study. (omitted)

Inhibitory effects of Cu$\^$2＋/ on the cytochrome P450 (P450)-catalyzed reactions of liver microsomes and reconstituted systems containing purified P450 and NADPH-P450 reductase (NPR) were seen. However, Zn$\^$2＋/, Mg$\^$2＋/, Mn$\^$2＋/, Ca$\^$2＋/, and Co$\^$2＋/ had no apparent effects on the activities of microsomal P450s. Cu$\^$2＋/ inhibited the reactions catalyzed by purified P450s lA2 and 3A4 with IC$\sub$50/ values of 5.7 and 8.4 ${\mu}$M, respectively.(omitted)

$\sigma$$\^$R/ is a sigma factor responsible for inducing the thioredoxin system in response to oxidative stress in Streptomyces coelicolor. RsrA, an anti-sigma factor, specifically binds to $\sigma$$\^$R/ and inhibits $\sigma$$\^$R/-directed transcription under reducing conditions. Exposure to H$_2$O$_2$ or thiol-specific oxidant diamide dissociates $\sigma$$\^$R/-RsrA complex. The redox-dependent regulation of $\sigma$$\^$R/-RsrA binding has been reported to involve thiol-disulfide exchange in RsrA, which contains 7 cysteines in 105 amino acid residues.(omitted)

An alternative sigma factor as encoded by the $\sigma$$\^$B/ gene in Streptomyces coelicolor A3(2) was known to be involved in the differentiation and osmotic stress response. Protein expression profiles of wild-type and a $\sigma$$\^$B/ mutant strain of S coelicolor A3(2), which is impaired in defense against osmotic stress, were compared in the absence and presence of osmotic stress, using 2-dimentional gel electrophoresis.(omitted)

Muscle contraction and relaxation are regulated by the sarcoplasmic reticulum (SR)-mediated $Ca^{2＋}$ release and $Ca^{2＋}$ uptake. The SR functions are closely related with the proteins residing in the SR such as ryanodine receptor, $Ca^{2＋}$-ATpase, calsequestrin, triadin and junctin. In an effort to further identify important functional SR proteins, experiments of sucrose-density gradient of SR fractionation, concanavalin A treatment, 2D gel electrophoresis, $^{45}$ Ca$^{2+}$ overlay, Strains-all staining, and peptide finger printing (PFP) were carried out.(omitted)d)

Junctate is a newly identified integral endo(sarco)plasmic reticulum membrane calcium binding protein, which is an alternative splicing form of the same gene generating aspartyl-hydroxylase and junctin. Screening a mouse heart cDNA library using canine junctin cDNA as a probe yielded 3 complete mouse heart cDNAs.(omitted)