• Title/Summary/Keyword: Awn

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Identification of SNPs Related to 19 Phenotypic Traits Using Genome-wide Association Study (GWAS) Approach in Korean Wheat Mini-core Collection

  • Yuna Kang;Yeonjun Sung;Seonghyeon Kim;Changsoo Kim
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2020.06a
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    • pp.120-120
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    • 2020
  • Based on the simple sequence repeat (SSR) marker, a Korean wheat core collection were established with 616 wheat accessions. Among them, the SNP genotyping for the entire genome was performed using DNA chip array to clarify the whole genome SNP profiles. Consequently, a total of 35,143 SNPs were found and we re-established a mini-core collection with 247 accessions. Population diversity and phylogenetic analysis revealed genetic diversity and relationships from the mini core set. In addition, genome-wide association study (GWAS) was performed on 19 phenotypic traits; ear type, awn length, culm length, ear length, awn color, seed coat color, culm color, ear color, loading, leaf length, leaf width, seeding stand, cold damage, weight, auricle, plant type, heading stage, maturation period, upright habit, and degree of flag leaf. The GWAS was performed using the fixed and random model circulating probability unification (FarmCPU), which identified 14 to 258 SNP loci related to 19 phenotypic traits. Our study indicates that this Korean wheat mini-core collection is a set of germplasm useful for basic and applied research with the aim of understanding and exploiting the genetic diversity of Korean wheat varieties.

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Effect of Harvest Time on Yield and Feed Value of Whole Crop Barleys with Different Awn Types (망 특성이 다른 청보리의 수확시기별 수량 및 사료가치)

  • Song, Tae-Hwa;Han, Ouk-Kyu;Yun, Seong-Kun;Park, Tae-Il;Kim, Kee-Jong
    • Journal of The Korean Society of Grassland and Forage Science
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    • v.31 no.4
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    • pp.361-370
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    • 2011
  • This study was conducted to obtain basic a information on growth characteristics, productivity, and feed values of whole crop barleys with different awn types. The field experiments were conducted on land at Iksan, Jeollabuk-do province in Korea for one year. Six barleys with three different awn types, such as Youngyang (rough), Yuyeon (hood), Youho (hood), Iksan449 (hood), Iksan456 (hood), and Iksan448 (awnless), were used in this study. Barleys were harvested on five growth stages after (DAH); 20 days after heading (20 DAH), 25 DAH, 30 DAH, 35 DAH, and 40 DAH. Heading was earlier in Yuyeon (April 22), while was later in Iksan448 (April 29). The maximum dry matter and total digestible nutrients (TDN) yields, 11.8 and 8.1 ton per ha, respectively, was recorded in Ikan456 harvested at 35~40 DAH, followed by Youngyang, Yuyeon, Iksan448, Youho and the lowest in Iksan449. They were increased significantly with advancing crop maturity. Crude protein content was the highest in Iksan448 (10.9%) and the lowest in Youho (9.7%) and that was decreased significantly with late harvest. Total digestible nutrients (TDN) and relative feed value (RFV) were the highest in Iksan448 (73.0%, 183.8, respectively) and the lowest in Iksan456 (68.0%, 135.4, respectively) and they were increased significantly with late harvest. The mean RFV evaluated by awn types was the highest in Iksan448 (183.8) of awnless, the lowest in Youho (149.5) and Iksan456 (135.4), indicated the insufficiency of hooded type barleys as good fodder use. Therefore, in this study suggest that hooded barley should improve forage productivity as well as quality.

Hybrid Vigor and Reciprocal Effect of Several Growth and Yield Characters in Fls crossed between Hulled and Naked Barley (겉보리와 쌀보리의 교잡 F1 세대에서 생육 및 수량형질의 잡종강세와 정역간 교잡효과)

  • 정원복;정영주;정영수
    • Journal of Life Science
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    • v.12 no.3
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    • pp.256-263
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    • 2002
  • This study was carried out to estimate the degree of heterosis and heterobeltiosis, and the heritability and genetic correlation in F$_1$hybrid produced by reciprocal crosses between two six-rowed hulled barley (Gangbori and Olbori) and three six-rowed naked barley (Saechalssalbori, Saessalbori, and Moodeongssalbori). Heterosis was observed positively in traits such as cults length, spike length, awn length, leaf length, leaf width, number of spikes per plant, number of grains per spike, and 1000 grain weight. Heterosis and heterobeltiosis from the crosses with hulled barley as a material parent showed higher performance in culm length, leaf length, leaf width, number of spike per plant, number of grains per spike. The hulled grain characteristics is dominant over the naked one. The highest heritability was confirmed in leaf width with a value of 94.5% and overall high heritability was observed in most traits with the range from 76.7% to 94.5%. In an analysis of correlation coefficient, higher genetic correlations were observed between leaf length and number of spikes per plant(0.970), between cults length and number of grains per spike(0.963), and between awn length and leaf length(0.862) in the forward crosses in which hulled barley was maternal. In the reverse crosses, higher genetic correlation was observed between culm length and spike length(0.926), between awn length and leaf length(0.922), and between number of spikes per plant and number of grains per spike(0.713).

A new record of Carex (Cyperaceae) to Korean flora: Carex benkei T. Shimizu (한국 사초속(사초과)의 미기록 식물: 긴화살사초)

  • Lee, Hye-Jeong;Ji, Seong-Jin;Kim, Jong-Hwan;Oh, Seung-Hwan;Yang, Jong-Cheol
    • Korean Journal of Plant Taxonomy
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    • v.42 no.4
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    • pp.335-339
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    • 2012
  • An unrecorded species, Carex benkei T. Shimizu, was found in Is. Jaewondo, Jaewon-ri, Imja-myeon, Sinan-gun, Jeollanam-do and Dongbaik-dongsan, Seonheul-ri, Jocheon-eup, Jeju-si, Is. Jeju-do, South Korea. C. benkei is closely related to C. transversa Boott and C. brownii Tuck., and C. benkei is distingushied from the pistillate scales length, excluding the awn, similar to the achene and the beak of the achene with an annular appendage. A new Korean name, 'Gin-Hwa-Sal-Sa-Cho', was given based on its long pistillate scales excluding the awn compared with Carex transversa Boott. We provide here its redescription, illustrations, photographs, and a key to species of the sect. Confertiflorae Franch. ex Ohwi.

A morphological study of Geranium (Geraniaceae) on the fruit-discharge type (Geranium (Geraniaceae)의 종자산포형태에 따른 형태학적 연구)

  • 박선주;김주환
    • Journal of Environmental Science International
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    • v.11 no.10
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    • pp.1011-1021
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    • 2002
  • Fruit-discharge type of forty species of Asian Geranium were examined and their evolutionary trends and taxonomic system were discussed. Two main types of seed discharge in Geranium are made the basis of its divison into subgenera: Geranium subgenus Geranium, with a ballistic expulsion of the seed from mericarp, Geranium subgenus Robertium, with forcible discharge of the mericarp with the seed in it, separately from the awn. Variants of the seed ejecting type permit the division of Geranium subgenus Geranium into three sections. Section Ceranium, these has bristles at the base of the mericarp for prevent the seed from dropping from the divergent mericarp. Section Dissect, these has prongs at the base of the mericarp far prevent the seed from dropping from the divergent mericarp. Section Tuberosa, these has no bristles and prongs at the base of the mericarp, instead, retained of seed in pre-explosive interval by twist. Geranium subgenus Robertium was divided into two sections, Section Ruberta, with deeply wrinkled on the surface of mericarp at the time of discharge. Section Batrachioides, and section Trilopha, without wrinkle on the surface of mericarp at the time of discharge. According to the seed discharge, subgenus Geranium is thought to be more advanced than subgenus Robertium.

Growth Characteristics and Forage Productivity of New Forage Barley Variety, 'Miho' (청보리 신품종 '미호'의 생육특성과 수량성)

  • Oh, Young-Jin;Park, Tae-Il;Park, Hyoung-Ho;Han, Ouk-Kyu;Song, Tae-Hwa;Park, Jong-Chul;Kim, Yang-Kil;Park, Jong-Ho;Kang, Hyeon-Jung;Kang, Chon-Sik;Cheong, Young-Keun;Kim, Kyong-Ho;Kim, Bo-Kyeong;Yun, Geon-Sig;Hong, Gi-Heung;Bae, Jeong-Suk;Lee, Seong-Tae
    • Journal of The Korean Society of Grassland and Forage Science
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    • v.36 no.4
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    • pp.370-375
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    • 2016
  • The purpose of development new variety 'Miho' (Hordeum vulgare L.) is a favorite with livestock feed and develop varieties resistant to disease and lodging. 'Miho' was carrying out the growth habit of group III with green and mid-wide leaf. Awn that is related to preference of livestock is a semi-smooth awn. This cultivar had 96 cm of culm length, 650 of spikes $per\;m^2$. Heading date of 'Miho' was April 27, and maturing date on May 30, which were later than cultivar 'Youngyang'. It also showed strong winter hardiness, and similar resistance to shattering and bariy yellow mosaic virus (BaYMV) compared with those of check one. The best thing among the traits of a good quality with the plant green at the latter growing period. The average forage dry matter yield in the regional yield trial was about 13.1, 12.1 MT per ha in upland and paddy field, respectively, which were 9%, 2% higher than that of the check cultivar. It's also showed 6.8% crude protein, 27.1% ADF (acid detergent fiber), and 67.5% TDN (total digestible nutrients), including higher silage quality for whole crop barley. This cultivar would be suitable for the area whose average minimum temperature was above $-8^{\circ}C$ January in Korean peninsula.

Agronomic Characteristics of Sorghum bicolor (L.) Moench Germplasm (수수 유전자원의 작물학적 특성)

  • Yoon, Seong-Tak;Xu, Zhen Yu;Zhang, Qing-Yu;Kim, In-Sook;Kim, Tae-Ho;Nam, Jung-Chang
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.55 no.1
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    • pp.83-90
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    • 2010
  • Crop characteristics of 179 sorghum (Sorghum bicolor L. Moench) resources collected in Korea were investigated in order to establish basic data for the improvement of crop breeding. Spike types of 179 sorghum resources were classified as 5 types of open-loose type, broom-tillering type, half broom-tillering type, extreme-compact type and compact type, of which broom-tillering type was the highest ratio of 38.0% (68 plant resources) of 179 germplasm. In the existence and nonexistence of spike awn in 179 sorghum resources, 28.5% (51 plant resources) showed existence of spike awn, whereas the rest of 71.5% (128 plant resources) had no spike awn. Seed type was classified as 5 types, of which circle-shape showed the highest ratio of 43.0% (77 plant resources) and the lowest was inclined-circle shape by 7.3% (13 plant resources). Seed color was classified as 4 colors of brown, white, whitish brown, and yellowish brown, of which yellowish brown was the highest ratio of 84.4% (151 plant resources) among them. Days from seeding to heading date showed the range from 67 to 88 days with the average of 77.4 days and the highest frequency proportion of it was the group from 76 to 80 days, which occupied 37.4% (67 plant resources) of 179 germplasm. 179 sorghum resources showed high variation in the range of culm length with the average of 253.8 cm and group from 92 cm to 360 cm of culm length showed the highest frequency proportion of 20.6% (37 plant resources). Spike length showed the range from 15 to 49 cm with the average of 28.8 cm and the highest frequency distribution of it was the group from 31 to 35 cm with the proportion of 26.3% (47 plant resources), whereas the lowest was below 15 cm with the proportion of 0.6%. Days from seeding to physiological maturity showed the range from 110 to 146 days with the average of 125.5 days and the highest frequency proportion (39.7%) of it was the group from 111 to 115 days, while there were also occupied with 2 plant resources below 110 days and 23 plant resources over 141 days among 179 germplasm. Number of grains per spike showed the range from 163 to 4,532 grains with the average of 2,068.6 grains and group from 1,601 to 2,000 grains per spike was the highest frequency distribution with the proportion of 25.7% (46 plant resources). 1000 grains weight showed the range from 10.6 to 38.1g with the average of 25.6g and group from 26.0 to 30.0g was the highest frequency distribution with the proportion of 44.1% (79 plant resources).

A New Forage Barley (Hordeum vulgare L.) Cultivar 'Mihan' with Ruminant-Palatable Semi-Smooth Awn (가축 기호성이 좋은 반매끈망을 가진 청보리 신품종 '미한')

  • Park, Jong-Ho;Cheong, Young-Keun;Kim, Kyong-Ho;Park, Tae-Il;Kim, Yang-Kil;Park, Hyoung-Ho;Yoon, Young-Mi;Han, Ouk-Kyu;Yun, Geon-Sig;Hong, Ki-Heung;Bae, Jeong-Suk;Song, Jae-Ki;Oh, Young-Jin
    • Journal of The Korean Society of Grassland and Forage Science
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    • v.38 no.4
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    • pp.253-259
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    • 2018
  • A new barley (Hordeum vulgare L.) cultivar 'Mihan' having ruminant-palatable semi-smooth awn and good silage quality was developed at National Institute of Crop Science(NICS), RDA in 2016. This cultivar was derived from a cross of the 'SB00T2064' and 'Suwon385' in 2001. And its promising line showed high yielding through the preliminary yield trials(PYT) and advanced yield trials (AYT) in Iksan from 2012 to 2013. It was designated as the 'Iksan487'. 'Iksan487' was conducted to regional yield trials (RYT) in one upland field and five paddy fields around Korea for three years from 2014 to 2016. And it was released as the name of 'Mihan'. It has growth habit of IV, erect plant type, green leaf and semi-smooth awn. Its heading date was April 23 in the paddy field and maturing date was May 24. Plant height of 'Mihan' was 96cm. Mihan's spikes per $m^2$ was 665. It has better winter hardiness and resistance to BaYMV (Barley Yellow Mosaic Virus) than that of barley cultivar 'Youngyang'. The average dry matter of 'Mihan' was about $10.9ton\;ha^{-1}$ in paddy field. And average feed quality of 'Mihan' was 10.3% of crude protein content, 26.1% of ADF (Acid Detergent Fiber), 46.9 % of NDF (Neutral Detergent Fiber) and 68.2% of TDN (Total Digestible Nutrients). 'Mihan' had grade I of silage quality. This cultivar would be suitable for the area above the daily minimum average temperature of $-8^{\circ}C$ in January in Korean peninsula.

Changes in Physiological Characteristics of Barley Genotypes under Drought Stress (한발저항성 정도가 다른 보리 품종들의 한발처리에 따른 생리적 특성변화)

  • 이변우;부금동;백남천;김정곤
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.48 no.6
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    • pp.506-515
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    • 2003
  • Six barley varieties that showed different degree of drought tolerance were grown with and without drought stress treatment (control), and investigated for the temporal changes in growth and several physiological traits after drought treatment. Soil water potential was -0.05 ㎫ at the initial stage of drought treatment and dropped to -0.29 ㎫ at 19 days after withholding irrigation. Soil water potential (SWP) maintained at -0.05 ㎫ in the control. The dry weight (DW) under the drought treatment were reduced compared to the control as follows: Dicktoo-S (short awn), 69% ; Dicktoo-L (long awn), 70%; Dicktoo-T (tetra), 86%; Dongbori-1, 69%; Suwonssalbori-365, 55% and Tapgolbori, ,37%. Dicktoo lines and Dongbori-1 were more tolerant than Suwonssalbori-365 and Tapgolbori. Leaf relative water contents (RWC) and leaf water potential (LWP) decreased obviously under the drought condition, the decrease being greater especially in the less drought-tolerant barley genotypes. Dongbori-1 and Dicktoo-L in drought treatment showed net photosynthesis of 38% and 17% compared to the control, respectively, and the other four genotypes much lower photosynthesis of 1.1% to 7.0%. Stomatal conductance, mesophyll conductance, and the photochemical efficiency (Fv/Fm) of PS II were reduced by drought treatment, the reduction being greater in drought-sensitive genotypes. The drought-tolerant genotypes had greater osmotic adjustment (OA) capacity under water stress. Thus, the decrease of RWC and LWP was lower and the turgor pressure conservation capacity was higher under water stress in drought-tolerant genotypes. Drought-tolerant genotypes showed less decrease of photosynthesis because stomatal conductance, mesophyll conductance and the ratio (Fv/Fm) of the variable to maximal fluorescence of drought-resistant genotype was decreased less in the drought stress condition. In conclusion, the drought-tolerant genotypes had better water conservation capacity through efficient OA, and this led to the lower decrease of photosynthesis and growth in water stress condition.