• Title/Summary/Keyword: 대사체 분석

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Effect of Animal-Welfare Environment on the Metabolomic Properties of Breast and Thigh Meat from Two Broiler Strains (동물복지 사육환경이 두 육계 품종의 가슴육 및 다리육의 대사체학적 특성에 미치는 효과)

  • Lee, Dongheon;Jung, Jong Hyun;Jo, Cheorun
    • Korean Journal of Poultry Science
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    • v.48 no.4
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    • pp.239-253
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    • 2021
  • This study investigates the metabolomic changes in breast and thigh meat from Cobb and Ross 308 chickens regarding the rearing environment. One-day-old Cobb and Ross broilers were raised for 35 days in conventional and animal welfare farms with, amongst others, different floor sizes, stock densities, and ammonia concentrations. One-dimensional 1H nuclear magnetic resonance, orthogonal partial least squares-discriminant analysis (OPLS-DA), and pathway analyses were performed to analyze the metabolomic properties of broiler meat. For breast meat, only those from the Ross strain could be separated according to the environment in the OPLS-DA plot. Ross breast meat from animal welfare farms showed significantly higher acetate, anserine, creatine, and inosine monophosphate content than those from conventional farms (P<0.05). In contrast, for thigh meat, the Cobb strain was differentiated using OPLS-DA. The contents of five metabolites, such as glucose and lactate, were higher in thigh meat from animal welfare farms; however, nine metabolites, including seven free amino acids, were lower compared to those from conventional farms (P<0.05). Pathway analysis was performed to interpret the biological changes in chicken meat based on environmental factors. The results indicated that the animal welfare environment led to significant changes in four metabolic pathways in Ross breast meat and in 20 metabolic pathways in Cobb thigh meat (P<0.05). In conclusion, the animal welfare environment could influence the metabolomic properties of Ross breast meat and Cobb thigh meat, which may affect the sensory quality of meat.

Major Metabolites Involved in Skin Blackening of 'Niitaka' Pear Stored under Cold Temperature (신고 배 저온 저장 중 발생하는 과피 흑변에 관여하는 주요 대사체)

  • Lee, Eun Jin
    • Horticultural Science & Technology
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    • v.32 no.3
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    • pp.359-365
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    • 2014
  • Oriental pear (Pyrus communis L. cv 'Niitaka') was stored at $0^{\circ}C$ for 5 months and major metabolites involved in blackening of the peel were analyzed by untargeted GC-MS and targeted HPLC methods. In this study, peels of sound and skin-blackened pears were analyzed and compared. Skin-blackened fruit was clearly characterized by a distinctive pattern in changes which included a decrease of malic acid, succinic acid, and ascorbic acid, while an increase of fumaric acid, threonine, and gluconic acid, which indicated both reduced metabolic activity and anti-oxidative capacity of the cells. Chlorogenic acid was a major phenolic compound and the peel of sound fruit showed high levels of free phenolic compounds compared than the peel of skin-blackened fruit which are believed to be related to oxidation of phenolics in skin-blackened tissue. The changes or profiling of major metabolites by targeted or untargeted analysis method could become a useful tool for understanding physiology, disorder mechanism, and identifying metabolic networks connecting primary and secondary metabolism in postharvest research.

Evolutionary Classification of Metabolic Networks by Hierarchical Clustering (클러스터링 기법을 통한 대사 네트웍의 진화적 분류)

  • 오석준;정제균;장병탁
    • Proceedings of the Korean Information Science Society Conference
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    • 2002.10c
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    • pp.226-228
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    • 2002
  • 현재 유전자 서열 분석이 완료된 유전체들이 점점 늘어나고 있다. 따라서 이에 대한 방대한 정보가 생성됨에 따라 다양한 생물체들에 대하여 대사 네트웍을 통한 다차원적 분석이 가능하게 되었다. 대사 네트웍은 단백질 또는 효소들의 전체적인 상호작용을 표현하기 때문에 생물학적 메카니즘에 대하여 보다 풍부한 정보를 제공해 준다. 본 논문에서는 일차원적인 유전자 서열에 의한 종의 계통 분류가 아니라 메타 수준의 생리 구조적 비교를 통하여 계통분류학에 대하여 새로운 방법의 접근을 제안하고자 한다. 제안된 방법은 기존의 상동성 비교에 의한 계통 분류와 함께 좀 더 포괄적이고 거시적인 분석을 가능하게 한다.

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A study of the metabolites for 7-keto-DHEA-acetate in human urine (뇨시료에 함유된 7-keto-DHEA-acetate의 대사체에 관한 연구 (I))

  • Kim, Yunje;Lee, Jinhee
    • Analytical Science and Technology
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    • v.17 no.4
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    • pp.337-346
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    • 2004
  • 7-keto-dehydroepiandrosterone-acetate (7-keto-DHEA-acetate) is an anabolic steroids, and we studied basically to the metabolites of it after human dosing. We tested the matrix effect from human urine to detect the 7-keto-DHEA-acetate. And LC/ESI/MS and GC/MSD was used to detect the metabolites in dosed urine. We found the some unknown compound from dosed urine (M1, M2, M3, M4 and M5), and from these results, we supposed that these compounds have the more than 3 hydroxyl and/or ketone group. Metabolite M1 was supposed that molecular weight is 302 and 3-,17-diketone and 7-hydroxyl compound (7-OH-androstendione). Metabolite M2 was supposed that the molecular weight was same to M1 and 7-,17-diketone and 3-hydroxyl compound (7-keto-DHEA).

The Analysis of Quantified Characteristics of Actor Gangho Song's Speech Disfluency rates in Thirst(2009) (박쥐(2009) 배우 송강호 대사에서 비유창성 비율의 정량적 특징 분석)

  • Nam, Seung Suk
    • Proceedings of the Korea Contents Association Conference
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    • 2011.05a
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    • pp.311-312
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    • 2011
  • 이번 연구 목적은 배우 대사의 비유창성 비율 증감이 영화 내러티브 흐름과 어떤 상관 관계를 가지는지 전사작업을 통해 정량적으로 분석하는 것이다. 대화체는 잡음,간투어 등의 비유창성(DFs; Disfluencies) 이 나타난다. 배우는 자연스럽게 대사를 발화하려고 비유창성 비율을 인위적으로 높인다. 연구 대상은 박쥐(2009)의 배우 송강호(상현 역) 대사이다. 가톨릭 신부 상현이 뱀파이어가 되는 인물의 대사를 비유창성 특질들과 전사하였다. 그리고 주인공의 정체성에 따라 배우의 대사의 비유창성 비율의 변화 양상을 비교 분석하였다.

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Metabolomic Analysis of Ethyl Acetate and Methanol Extracts of Blueberry (Ethyl Acetate와 Methanol을 이용한 블루베리 추출물 대사체 분석)

  • Jo, Young-Hee;Kim, Sugyeong;Kwon, Da-Ae;Lee, Hong Jin;Choi, Hyung-Kyoon;Auh, Joong-Hyuck
    • Journal of the Korean Society of Food Science and Nutrition
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    • v.43 no.3
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    • pp.419-424
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    • 2014
  • Metabolite profiling of blueberry (cultivar "Spartan") was performed by extraction using different solvents, methanol and ethyl acetate, through metabolomic analysis using LC-MS/MS. Unsupervised classification method (PCA) and supervised prediction model (OPLS-DA) provided good categorization of metabolites according to the extraction solvents. Metabolites of the anthocyanin family, including delphinidin hexoside, delphinidin, 5-O-feruloylquinic acid, malvidin hexoside, malvidin-3-arabinoside, petunidin-3-arabinoside, and petunidin hexoside, were mainly detected in methanol fractions, whereas those of the flavonoid family, including chlorogenic acid, chlorogenic acid dimer, 6,8-di-C-arabinopyranosyl-luteolin, and luteolin were successfully prepared in the ethyl acetate fraction. Thus, metabolomic analysis of blueberry extracts allows for the simple profiling of whole and distinctive metabolites for future applications.

A study of the metabolites for 7-keto-DHEA-acetate in human urine (II) (뇨시료에 함유된 7-keto-DHEA-acetate의 대사체에 관한 연구 (II))

  • Kim, Yunje;Lee, Jinhee
    • Analytical Science and Technology
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    • v.17 no.5
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    • pp.401-409
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    • 2004
  • The 7-keto-DHEA-acetate is converted to 7-keto-DHEA, a metabolite of DHEA, and similar to its metabolism. We studied the metabolite M3, M4, and M5 of 7-keto-DHEA-acetate. The estimated molecular weight of M3 and M4 was 304 which were supposed to have more 3 hydroxyl and/or ketone groups. We could know that M3 is the 7-OH-DHEA which has the hydroxyl groups on 3 and 7-carbon and a ketone group on 17-carbon. In case of M4, it is the 7-oxo-diol metabolite which has the hydroxyl groups on 3 and 17-carbon and a ketone group on 7-carbon. The M5 was supposed that the molecular weight is 320 and has the three hydroxyl groups on 3, 6, and 16 carbon and the ketone group on 17-carbon. After dosing, 7-OH-DHEA showed the maximum urine flow in human urine after 5 hr and decreased rapidly. But we could find it until 58 hr why is a higher remaining substance.

Comparative untargeted metabolomic analysis of Korean soybean four varieties (Glycine max (L.) Merr.) based on liquid chromatography mass spectrometry (국내콩 4품종의 LC-MS 기반 비표적대사체 비교평가)

  • Eun-Ha Kim;Soo-Yun Park;Sang-Gu Lee;Hyoun-Min Park;Oh Suk Yu;Yun-Young Kang;Myeong Ji Kim;Jung-Won Jung;Seon-Woo Oh
    • Journal of Applied Biological Chemistry
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    • v.65 no.4
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    • pp.439-446
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    • 2022
  • Soybean is a crop with high-quality of protein and oil, and it is one of the most widely used genetically modified (GM) crops in the world today. In South Korea, Kwangan is the most utilized variety as a parental line for GM soybean development. In this study, untargeted LC-MS metabolomic approaches were used to compare metabolite profiles of Kwangan and three other commercial varieties cultivated in Gunwi and Jeonju in 2020 year. Metabolomic studies revealed that the 4 soybean varieties were distinct based on the partial least squares-discriminant analysis (PLS-DA) score plots; 18 metabolites contributed to variety distinction, including phenylalanine, isoflavones, and fatty acids. All varieties were clearly differentiated by location on the PLS-DA score plot, indicating that the growing environment is also attributable to metabolite variability. In particular, isoflavones and linolenic acid levels in Kwangan were significantly lower and higher, respectively compared to those of the three varieties. It was discussed that it might need to include more diverse conventional varieties as comparators in regard to metabolic characteristics of Kwangan for the assessment of substantial equivalence biogenetically engineered soybeans in a Kwangan-variety background.

Uncertainty evaluation of the analysis of 11-nor-9-carboxy-Δ9-tetrahydrocannabinol in hair by GC-NCI-MS/MS (GC-NCI-MS/MS를 이용한 모발 중 대마 대사체 분석의 측정불확도 평가)

  • Kim, Jin-Young;Lee, Jae-Il;Cheong, Jae-Chul;Suh, Yong-Jun;In, Moon-Kyo
    • Analytical Science and Technology
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    • v.24 no.1
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    • pp.1-9
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    • 2011
  • We described an estimation of measurement uncertainty in quantitative analysis of 11-nor-9-carboxy-${\Delta}^9$-tetrahydrocannabinol (THC-COOH), the metabolite of ${\Delta}^9$-tetrahydrocannabinol, in hair samples by using the bead-assisted liquid-liquid extraction and gas chromatography-tandem mass spectrometric (GC-NCI-MS/MS) detection. Traceability of measurement was established through the use of reference materials, calibrated volumetric tubes, volume measuring devices, and measuring instruments. The analytical results were compared and the different contributions to the uncertainty were evaluated. Inter-day variation was performed by using statistical analysis of several indicative factors. Measurement uncertainty associated with the analyte in real forensic hair samples were estimated using QC data. The major factor of contribution to combined standard uncertainty was inter-day repeatability, while those associated with preparation of analytical standard and also sample of weight were insignificant considering the degree of contribution. Relative uncertainty of relative extended standard uncertainty divided into the measured concentration of the analyte was 17% in a hair sample. The uncertainty of result evaluation will be invaluable to improve quality of the analysis.

Method validation of detecting ethanol metabolites (EtG, EtS) in post-mortem spleen (비장 조직에서 에탄올 대사체(EtG, EtS)를 검출하는 방법과 유효성 확인)

  • Kim, Soo-Min;Jo, Young-Hoon;An, Song-Hie;Lee, Woo-Jae;Kwon, Mia
    • Analytical Science and Technology
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    • v.34 no.3
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    • pp.115-121
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    • 2021
  • Ethyl glucuronide (EtG) and ethyl sulfate (EtS), which are ethanol metabolites, are direct indicators of ethanol intake; they have been studied in a variety of biological samples in forensic science. It is necessary to analyze ethanol metabolites to determine whether the ethanol detected in autopsy cases was due to alcohol consumption before death or due to the ethanol produced from post-mortem decay. In general, EtG and EtS are detected in the blood together with ethanol; however, it may be difficult to secure blood depending on the extent of decay. Therefore, the aforementioned method should be replaced by detecting the ethanol metabolites using tissue biological samples. In this study, we determined the optimal experimental conditions for detecting EtG and EtS from spleen samples using Liquid Chromatography - Tandem Mass Spectrometry (LC-MS/MS). Herein, the test method was validated, and an analysis method was applied to the actual autopsy cases.