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Comparison of PCR-RFLP and Real-Time PCR for Allelotyping of Single Nucleotide Polymorphisms of RRM1, a Lung Cancer Suppressor Gene (폐암 억제유전자 RRM1의 단일염기다형성 검사를 위한 PCR-RFLP법과 Real-Time PCR법의 유용성 비교)

  • Jeong, Ju-Yeon;Kim, Mi-Ran;Son, Jun-Gwang;Jung, Jong-Pil;Oh, In-Jae;Kim, Kyu-Sik;Kim, Young-Chul
    • Tuberculosis and Respiratory Diseases
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    • v.62 no.5
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    • pp.406-416
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    • 2007
  • Background: Single nucleotide polymorphisms (SNPs), which consist of a substitution of a single nucleotide pair, are the most abundant form of genetic variations occurring with a frequency of approximately 1 per 1000 base pairs. SNPs by themselves do not cause disease but can predispose humans to disease, modify the extent or severity of the disease or influence the drug response and treatment efficacy. Single nucleotide polymorphisms (SNPs), particularly those within the regulatory regions of the genes often influence the expression levels and can modify the disease. Studies examining the associations between SNP and the disease outcome have provided valuable insight into the disease etiology and potential therapeutic intervention. Traditionally, the genotyping of SNPs has been carried out using polymerase chain reaction-restriction fragment length polymorphism(PCR-RFLP), which is a low throughput technique not amenable for use in large-scale SNP studies. Recently, TaqMan real-time PCR chemistry was adapted for use in allelic discrimination assays. This study validated the accuracy and utility of real-time PCR technology for SNPs genotyping Methods: The SNPs in promoter sequence (-37 and -524) of lung cancer suppressor gene, RRM1 (ribonucleotide reductase M1 subunit) with the genomic DNA samples of 89 subjects were genotyped using both real-time PCR and PCR-RFLP. Results: The discordance rates were 2.2% (2 mismatches) in -37 and 16.3% (15 mismatches) in -524. Auto-direct sequencing of all the mismatched samples(17 cases) were in accord with the genotypes read by real-time PCR. In addition, 138 genomic DNAs were genotyped using real-time PCR in a duplicate manner (two separated assays). Ninety-eight percent of the samples showed concordance between the two assays. Conclusion: Real-time PCR allelic discrimination assays are amenable to high-throughput genotyping and overcome many of the problematic features associated with PCR-RFLP.

Value of Pulmonary Function Test as a Predicting Factor of Pneumothorax in CT-guided Needle Aspiration of the Lung (전산화단층촬영 유도하 경피적 폐침생검시 기흉발생 예측인자로써의 폐기능검사의 가치)

  • Kim, Yeon-Jae;Kim, Chang-Ho;Lee, Yeung-Suk;Park, Jae-Yong;Kang, Duk-Sik;Jung, Tae-Hoon
    • Tuberculosis and Respiratory Diseases
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    • v.40 no.3
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    • pp.259-266
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    • 1993
  • Background: To evaluate the risk factor of pneumothorax (PNX) which is the most common complication of CT-guided needle aspiration of the lung, we have examined the frequency of PNX according to the presence of obstructive ventilatory impairment determined by pulmonary function tests. Methods: A comparative study of analysis of forecd expiratory volume and folw-volume curves, and determinations of diffusing capacity taken before procedure were made between each 16 cases with PNX and controls with no PNX. Each of the control group was matched for sex, age, height, and size and depth of lesion with the former. Results: 1) In comparison of vital capacity and parameters derived from forced expiratory volume curve between two groups, VC and FVC were not significantly different, whereas $FEV_1$, $FEV_1$/FVC%, and FEF25-75% showed a significant decrease in the PNX gorup. Also, in the PNX group, all the observed values of parameters analyzed from flow-volune curve were siginificantly reduced in the PNX group compared with those in the control group. 2) The diffusing capacity tended to decrease along with varying individual differences in the PNX group. 3) Patients who had obstructive ventilatory impairment according to the results of pulmonary function tests experienced a twofold increase in the frequency of PNX and a sixfold increase in the frequency of chest tube drainage for treatment of PNX compared with those whose results were normal. Conclusion: These findings suggest that the exact evaluation of obstructive lung disease determined by pulmonary function test be considered assessing a pastient's risk for PNX in the patients who will take the CT-guided needle aspiration of the lung.

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Analysis of Air Current Measurements at External Induction-Style Kitchen and Bathroom Vents (외기유인형 주방·욕실 배기구의 기류측정 분석)

  • Lee, Yong-Ho;Kim, Seong-Yong;Park, Jin-Chul;Hwang, Jung-Ha
    • Journal of the Korean Solar Energy Society
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    • v.32 no.6
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    • pp.76-84
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    • 2012
  • This study conducted experiments to measure air currents in an experimental building according to external conditions, types of induction ducts, and types of internal sockets by applying an external induction duct comprised of inducing openings and lines and induction units to the kitchen and bathroom vents at the rooftop of a super high-rise apartment building in order to help to improve the venting performance. The study also proposed the optimization of the external induction-style kitchen and bathroom vents capable of wind power generation. (1) As for air current distribution according to vent velocity changes, it increased the venting performance of the kitchen and bathroom by 1.0m/s at vent velocity of 2.0m/s or higher and allowed for wind power generation. (2)As for air current distribution according to external velocity changes, it increased the venting performance of the kitchen and bathroom by 1.2m/s at external velocity of 2.0m/s or higher and allowed for wind power generation. (3)As for air current distribution according to wind direction changes($0{\sim}180^{\circ}$), it was favorable for higher vent velocity when the angle between the external induction duct direction and prevailing wind direction was within ${\pm}30^{\circ}$. (4)As for air current distribution according to induction duct type, the[M1] type combining the inducing openings and lines with the induction units recorded the highest improvement effects in the kitchen and bathroom venting performance by increasing vent velocity by 46%. (5)As for air current distribution according to the changing types of internal sockets where the main ducts of the kitchen and bathroom are connected to the external induction ducts, the venturi tube type[Sv] increased vent velocity by 66% based on the smoothest external inflow.

Development of inside-out probes for both Nuclear Magnetic Resonance Imaging and Nuclear Magnetic Resonance Spectroscopy (핵자기공명 영상법과 핵자기공명 분광법을 위한 뒤집음-탐침의 개발에 대한 연구)

  • Lee, Dong-Hun;Go, Rak-Gil;Jeong, Eun-Gi
    • Journal of Biomedical Engineering Research
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    • v.16 no.3
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    • pp.309-316
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    • 1995
  • RF (radio-frequency) probes of Nuclear Magnetic Resonance are one of the important factors and should be designed and built properly depending upon the geometry of the samples and the information. In general there are two kinds of rf probes : one encircles the sample while the other is placed on the surface of the sample. However, in case that the samples on human internal organs have a tube shape, the two kinds of rf probes, as specified above, are usually unsuitable for the internal imaging due to the degradation of signal-to-noise ratios (SNR's). In this case a probe should be positioned as close to the area as possible by putting the probe in the tubelike sample to improve filling factor In the present study inside-out probes have been constructed in the three different shapes such as an anti-solenoidal, a saddle and a dual surface types. RF-field distributions have also been calculated depending upon the geometrical changes of anti-solenoid probes. Moreover, the performance of the inside-out probes has been checked by measuring SNR's of the images acquired. The inside-out probes constructed in this study produced better SWR's and rf-field uniformity in the area close to the probes in comparing with any other commercial probes. There is a high feasibility that the constructed probes in the present study are applicable to the diagnosis of human bodies.

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Suppression Effect and Mechanism of Citrus Scab in the Citrus Pre-inoculated with Rhizobacterial Strains (근권세균을 전 접종한 감귤에서 감귤 더뎅이병 억제 효과 및 기작)

  • Kim, So-Yeon;Hyun, Jae-Wook;Jeun, Yong-Chull
    • Research in Plant Disease
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    • v.17 no.3
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    • pp.302-310
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    • 2011
  • Elsinoe fawcettii is one of major pathogenic fungi which cause citrus scab diseases, resulting in fruit blemishes that reduce the economic value of fruit. By increasing interest to safe products of crops, the alternative methods of disease control is highly required. We investigated whether the 215 bacterial strains isolated from Jeju Island possess antifungal effect or suppression effect on the symptom development by Elsinoe fawcettii on citrus. Among them, three bacterial strains THJ 609-3, MRL408-3, and TRH423-3 that exhibited antifungal capacity against Elsinoe fawcettii were selected. To illustrate the disease suppression mechanism, pre-inoculation with the selected bacterial strains was carried out whether could suppress the citrus crab on the leaves. The observation with a fluorescence microscope revealed that the selected bacteria could decrease the number of fungal spores. The ratio of germ tube formation was also decreased by the selected bacterial strains at one day after fungus challenge. The strain THJ 609-3 was identified as Pseudomonas putida as a result of analyzing the internal transcript spaces of the rhizobacterial rDNA. The strains MRL 408-3 and TRH 423-3 were identified as Burkholderia gladioli. Our results may be valuable when the selected rhizobacterial strains used as the environment-friendly microbe for biological control on citrus scab caused by Elsinoe fawcettii.

Suggestion on Strength Formula of Square Hollow Section Tubluar Column-to-BeamPinned Connections (각형강관 기둥-보 핀접합부의 내력식 제안)

  • Choi, Sung Mo;Lee, Seong Hui;Lee, Kwang Ho
    • Journal of Korean Society of Steel Construction
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    • v.18 no.5
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    • pp.525-534
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    • 2006
  • Column-to-beam pinned connections can cause local moment to the web of a steel tube due to the distance of eccentricity between the row of bolts and the column flange, which possibility deteriorates the load capacity of column. In this study, a square hollow section tubular used finite element analysis of a square hollow section tubular column was carried out, and the column width and thickness, existence and non-existence of internal reinforcement, and existence and non-existence of compressive force were taken as variables to examine the load capacity deterioration of a square column caused by moment. To guarantee the reliability of the finite element results, some specimens were fabricated and tested. The yield line method was applied to suggest the strength formulas of the square tubular column to the beam pinned connections. Based on the study results, the column strength the moment of the square hollow section tubular column to the beam pined connections improved with the increase in the w to strength limitations, a no-reinforcement type of square hollow section tubular column was proposed, and if the limitation values were not satisfied, the reinforcement of the internal column was made mandatory. Therefore, the horizontal -reinforcement type considered the strength increase, and the fabrication of the square hollow section tubular column was ar column that considered its load capacity with the moment for the no-reinforcement and the horizontal-reinforcement types.

Predictive Factors for Symptomatic Dislodgement of Percutaneous Transhepatic Biliary Drainage Catheter in Patients with Malignant Biliary Obstruction (악성 담관 폐쇄 환자에서 경피경간 담도 배액술의 유증상 이탈 발생의 예측 인자)

  • Hee Jeong Yu;Jung Gu Park;Gyoo Sik Jung;Kwang Il Seo;Hyun Joon Park;Jong Hyouk Yun
    • Journal of the Korean Society of Radiology
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    • v.84 no.6
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    • pp.1350-1360
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    • 2023
  • Purpose To evaluate the factors that predict symptomatic dislodgement of a percutaneous transhepatic biliary drainage (PTBD) catheter in patients with malignant biliary obstruction. Materials and Methods This retrospective study included 572 patients with malignant biliary obstruction who underwent 733 PTBD catheter insertions between January 2010 and February 2015. The duration of catheter placement, approach site, location of the catheter tip, insertion angle, presence of a closed-loop pigtail, and tube diameter were evaluated. Results During the follow-up period, 224 PTBD catheter dislodgements (30.56%) were observed in 157 patients. Among them, 146 (19.92%) were symptomatic. The mean duration from catheter insertion until dislodgement was 32 days (range: 1-233 days). Male (odds ratio [OR]: 1.636, 95% confidence interval [CI]: 1.131-2.367, p = 0.009), right-sided approach (OR: 1.567, 95% CI: 1.080-2.274, p = 0.018), increased insertion angle (OR: 1.015, 95% CI: 1.005-1.026, p = 0.005), and incomplete closed-loop pigtail formation (OR: 1.672, 95% CI: 1.098-2.545, p = 0.016) were independent factors predictive of symptomatic dislodgement of a PTBD catheter. Conclusion Factors predictive of symptomatic catheter dislodgement included male sex, a right-sided approach, increased insertion angle, and incomplete closed-loop pigtail formation.

The Diagnostic Yield and Complications of Percutaneous Needle Aspiration Biopsy for the Intrathoracic Lesions (경피적 폐생검의 진단성적 및 합병증)

  • Jang, Seung Hun;Kim, Cheal Hyeon;Koh, Won Jung;Yoo, Chul-Gyu;Kim, Young Whan;Han, Sung Koo;Shim, Young-Soo
    • Tuberculosis and Respiratory Diseases
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    • v.43 no.6
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    • pp.916-924
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    • 1996
  • Bacground : Percutaneous needle aspiration biopsy (PCNA) is one of the most frequently used diagnostic methcxJs for intrathoracic lesions. Previous studies have reponed wide range of diagnostic yield from 28 to 98%. However, diagnostic yield has been increased by accumulation of experience, improvement of needle and the image guiding systems. We analysed the results of PCNA performed for one year to evaluate the diagnostic yield, the rate and severity of complications and factors affecting the diagnostic yield. Method : 287 PCNAs undergone in 236 patients from January, 1994 to December, 1994 were analysed retrospectively. The intrathoracic lesions was targeted and aspirated with 21 - 23 G Chiba needle under fluoroscopic guiding system. Occasionally, 19 - 20 G Biopsy gun was used for core tissue specimen. The specimen was requested for microbiologic, cytologic and histopathologic examination in the case of obtained core tissue. Diagnostic yields and complication rate of benign and malignant lesions were ca1culaled based on patients' chans. The comparison for the diagnostic yields according to size and shape of the lesions was analysed with chi square test (p<0.05). Results : There are 19.9% of consolidative lesion and 80.1% of nodular or mass lesion, and the lesion is located at the right upper lobe in 26.3% of cases, the right middle lobe in 6.4%, the right lower lobe 21.2%, the left upper lobe in 16.8%, the left lower lobe in 10.6%, and mediastinum in 1.3%. The lesion distributed over 2 lobes is as many as 17.4% of cases. There are 74 patients with benign lesions, 142 patients with malignant lesions in final diagnosis and confirmative diagnosis was not made in 22 patients despite of all available diagnostic methods. 2 patients have lung cancer and pulmonary tuberculosis concomittantly. Experience with 236 patients showed that PCNA can diagnose benign lesions in 62.2% (42 patients) of patients with such lesions and malignant lesions in 82.4% (117 patients) of patients. For the patients in whom the first PCNA failed to make diagnosis, the procedure was repeated and the cumulative diagnostic yield was increased as 44.6%, 60.8%, 62.2% in benign lesions and as 73.4%, 81.7%, 82.4% in malignant lesions through serial PCNA. Thoracotomy was performed in 9 patients with benign lesions and in 43 patients with malignant lesions. PCNA and thoracotomy showed the same pathologic result in 44.4% (4 patients) of benign lesions and 58.1% (25 patients) of malignant lesions. Thoracotomy confirmed 4 patients with malignat lesions against benign result of PCNA and 2 patients with benign lesions against malignant result of PCNA. There are 1.0% (3 cases) of hemoptysis, 19.2% (55 cases) of blood tinged sputum, 12.5% (36 cases) of pneumothorax and 1.0% (3 cases) of fever through 287 times of PCNA. Hemoptysis and blood tinged sputum didn't need therapy. 8 cases of pneumothorax needed insertion of classical chest tube or pig-tail catheter. Fever subsided within 48 hours in all cases. There was no difference between size and shape of lesion with diagnostic yield. Conclusion: PCNA shows relatively high diagnostic yield and mild degree complications but the accuracy of histologic diagnosis has to be improved.

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EFFECT OF DIFFERENT STERILIZATION METHODS ON THE SURFACE MORPHOLOGY OF PPDO-hybrid-PLGA NANOFIBER SCAFFOLD AND ATTACHMENTS OF PC12 CELL (다양한 소독방법이 PPDO-hybrid-PLGA nanofiber scaffold의 형태와 세포부착에 미치는 영향에 관한 연구)

  • Lee, Ju-Hyon;Min, Hyun-Gi;Jung, Ju-Young;Kang, Na-Ra
    • Journal of the Korean Association of Oral and Maxillofacial Surgeons
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    • v.34 no.6
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    • pp.635-639
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    • 2008
  • Objectives : the effect of different sterilization methods on the surface morphology of PPDO-hybrid-PLGA nanofiber scaffold and attachments of PC12 cell were investigated. Methods : Poly (p-dioxone)-hybrid-Poly (lactide-glycolide) (PPDO-hybrid-PLGA) nanofiber scaffold, fabricated in a tube form with 1.5 mm internal diameter, 0.2 mm thickness and 5 mm length, was prepared using electrospinning method. To study the surface morphology using SEM, The study group and control group in respective were; Control:Non-sterilized scaffold, Group I:scaffold sterilized with 70% Alcohol, Group II: scaffold sterilized with Ethylene Oxide at $65^{\circ}C$, and Group III: scaffold sterilized with Ethylene Oxide at $37^{\circ}C$. To investigate viability of the PC12 cell on the scaffold, The study group and control group in respective were; Control: sterilized with 70% Alcohol, Group I: sterilized with Ethylene Oxide at $65^{\circ}C$, and Group II: sterilized with Ethylene Oxide at $37^{\circ}C$. Results : 1. The surface morphology was slightly changed in Group I, II and Group III, compared with control. 2. The attachment of PC12 cells in Group I, II was not higher than in control Discussion : The attachment of PC12 cell is not influenced by different sterilization methods.

Optimum Design of Liquid Cooling Heat Exchangers and Cooling-Fluid Distributors for a Amplifier Cabinet of Telecommunication Equipment (통신장비용 앰플리파이어 액체냉각장치 및 냉각유체 분배기의 최적설계 및 성능특성)

  • Yun, Rin;Kim, Yong-Chan;Kim, Hyun-Jong;Choi, Jong-Min;Cheon, Deok-Woo
    • Korean Journal of Air-Conditioning and Refrigeration Engineering
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    • v.18 no.1
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    • pp.24-30
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    • 2006
  • Three liquid cooling heat exchangers for cooling of telecommunication equipment were designed and their cooling performances were tested. The liquid cooling heat exchangers had twelve rectangular channels $(5\times3 mm)$ with different flow paths of 1, 4, and 12. Silicon rubber heaters were used to provide heat flux to the test section. Heat input was varied from 75 to 400 W, while flow rate and inlet temperature of working fluid were altered from 1.2 to 4.0 liter/fin and from 15 to 3$30^{\circ}C$, respectively. The 4-path heat exchanger showed lower and more uniform average inner temperatures between heaters and the surface of heat exchanger than those of the others. To obtain optimal distribution of working fluid to each channels of liquid cooling heat exchangers, 2-3-2 and 4-3 type tube distributors were designed, and their distribution performances of working fluid were numerically and experimentally investigated. The distributor of the 2-3-2 type showed superior distribution performance compared with those of the 4-3 type distributor.