• Title/Summary/Keyword: strain analysis

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A New Malting Barley Variety, 'Baegho' with Resistance to Barley Yellow Mosaic Virus and Powdery Mildew (보리호위축병과 흰가루병 저항성 맥주보리 신품종 '백호')

  • Kim, Mi-Jung;Hyun, Jong-Nae;Park, Jong-Chul;Kim, Yang-Kil;Lee, Mi-Ja;Kim, Dae-Ho;Kang, Sung-Ju;Kim, Sung-Taeg
    • Korean Journal of Breeding Science
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    • v.43 no.6
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    • pp.538-542
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    • 2011
  • A new malting barley variety, 'Baegho', was developed from a cross between Azuma Golden and Nishinochikara in 1998. An elite line, YMB2139-2B-1-10-2, was selected in 2005 and designated as Milyang137. It showed good agronomic performance in the regional adaptation yield trials (RYT) from 2006 to 2008 and was released with the name of 'Baegho' having high yielding and BaYMV and powdery mildew resistance. The average heading and maturing dates of 'Baegho' were April 21 and May 28, which were 3 and 2 day later than those of Hopum, check variety, at the RYT, respectively. 'Baegho' has shoter culm length (78 cm), more spikes ($1,062per\;m^2$) and heavier 1,000 grain weight (40.7 g) than those of Hopum, respectively. 'Baegho' is resistant to domestic BaYMV strains I, III and IV and powdery mildew at Iksan. In growth habit, 'Baegho' is close to type (IV) that is distinguished from other Korean malting barley cultivars, which could tolerant to premature heading damage that is major concern for the practice of the malting barley cropping. The yield potential of 'Baegho' in the RYT was about 5.57 MT/ha, which is about 13% higher than those of Hopum. This variety has good malting quality in grain and malting analysis showed better 1,000 grain weight, husk rate, diastatic power than those of Hopum. 'Baegho' applied for protection of new varieties of plant in 2009.

Efficient Transformation Method of Soybean Using Meristematic Tissues of Germinating Seeds (발아종자의 분열조직을 이용한 효율적인 콩 형질전환 방법)

  • Kim, Yul-Ho;Park, Hyang-Mi;Choi, Man-Soo;Sohn, Soo-In;Shin, Dong-Bum;Lee, Jang-Yong
    • Korean Journal of Breeding Science
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    • v.40 no.3
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    • pp.278-285
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    • 2008
  • An efficient transformation method for soybean [Glycine max (L.) Merr.] using meristematic tissues of germinating seeds has been established. The embryonic axes were excised from germinating seeds of Korean soybean cultivar, Iksannamulkong and 0.5-2 cm long segment containing meristematic tissues were prepared by cutting hypocotyl region. The explants were inoculated with Agrobacterium tumefaciens strain LBA4404 harboring a binary vector with the bar gene as a selectable marker gene and a ${\beta}-glucuronidase$ (GUSINT) reporter gene, and then co-cultured for 7 days on co-cultivation medium (CCM). The meristematic tissues were cultured on shoot induction medium (SIMP6) supplemented with 0.4 mg/l $N_6-benzylaminopurine$ (BAP) and 0.1 mg/l indolebutyric acid (IBA) in the presence of 6 mg/l L-phosphinotricin (PPT) for 2 weeks and the surviving explants were transferred to shoot elongation medium (SEMP6). Transformation was confirmed by Southern blot analysis and the transformation efficiencies ranged from 1.48 to 2.07%. The new modified transformation method was successfully implemented for obtaining several transgenic lines with SMV-CP gene. It is expected that this method could efficiently be used for the transformation of recalcitrant soybean cultivars.

Phosphate Solubilization and Plant Growth Promotion by Crop Associated Bacteria (인산용해미생물에 의한 불용성 인의 용해와 식물생장에 미치는 영향)

  • Na, Jung-Heang;Choi, Jin-Ho;Jin, Rong-De;Ko, Hyun-Sun;Park, Ro-Dong;Kim, Kil-Yong
    • Korean Journal of Soil Science and Fertilizer
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    • v.42 no.1
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    • pp.29-36
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    • 2009
  • Fourteen bacterial strains were isolated from crop rhizosphere and identified as phosphate solubilizing bacteria (PSB) by 16S rRNA analysis. Only 3 strains exhibited a strong ability to solubilize insoluble phosphate in agar medium containing a hydroxyapatite. The rates of P solubilization by isolates were ranged from 200 and $2300\;mg\;L^{-1}$, which are inversely correlated with pH in culture medium. Furthermore, HPLC analyses reveal the production of organic acid from the culture filtrates of PSB. Among these, strain Acinetobacter sp. released only gluconic acid, Pseudomonas orientalis produced gluconic acid which was subsequently converted into 2-ketogluconic acid, and Enterobacter asburiae released acetic acid and succinic acid. On the other hand, P. orientalis and E. asburiae released $372\;mg\;L^{-1}$ and $191\;mg\;L^{-1}$ of IAA into broth culture, respectively, while Acinetobacter sp. did not produce IAA. Furthermore, in vivo study showed that plant growth promoting effect by bacteria generally seemed to be increased IAA production and phosphate solubilization.

Selection of Functional Lentinula edodes Strains with High Ergothioneine Content using Mono-mono Hybridization (단핵균주간 교잡에 의한 에르고티오네인 함량이 높은 기능성 표고 균주 선발)

  • Kim, Min-Jun;Jeong, Yeun Sug;Jang, Yeongseon;Ka, Kang-Hyeon
    • The Korean Journal of Mycology
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    • v.49 no.4
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    • pp.507-514
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    • 2021
  • Lentinula edodes have been cultivated extensively not only in South Korea but also in other Asian countries. In terms of taste and nutrition, it is a valuable mushroom that is comparable to other mushrooms. L. edodes contains various physiologically active compounds that promote human health. One compound, ergothioneine, exerts a powerful antioxidant function that inhibits cellular senescence. As it is not biosynthesized by plants or animals, L. edodes is very important for ergothioneine supply. The L. edodes cultivars Bambithyang (NIFoS 3404) and Sansanhyang (NIFoS 3420) of the National Institute of Forest Science (NIFoS) had higher ergothioneine content than the other cultivars, and 11 strains were obtained using mono-mono hybridization between them. The strains were inoculated into sawdust media to obtain fruiting bodies, and the ergothioneine content of each hybrid strain was confirmed using high-performance liquid chromatography (HPLC) analysis. Among the 11 strains, NIFoS 5108 had a higher ergothioneine content than the parental strains, Bambithyang (NIFoS 3404) and Sansanhyang (NIFoS 3420). This study revealed that it is possible to develop cultivars with improved specific functions using mono-mono hybridization.

Non-Polar Myxococcus fulvus KYC4048 Metabolites Exert Anti-Proliferative Effects via Inhibition of Wnt/β-Catenin Signaling in MCF-7 Breast Cancer Cells

  • Park, Juha;Yoo, Hee-Jin;Yu, Ah-Ran;Kim, Hye Ok;Park, Sang Cheol;Jang, Young Pyo;Lee, Chayul;Choe, Wonchae;Kim, Sung Soo;Kang, Insug;Yoon, Kyung-Sik
    • Journal of Microbiology and Biotechnology
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    • v.31 no.4
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    • pp.540-549
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    • 2021
  • The Wnt/β-catenin signaling pathway is involved in breast cancer and Myxococcus fulvus KYC4048 is a myxobacterial strain that can produce a variety of bioactive secondary metabolites. Although a previous study revealed that KYC4048 metabolites exhibit anti-proliferative effects on breast cancer, the biochemical mechanism involved in their effects remains unclear. In the present study, KYC4048 metabolites were separated into polar and non-polar (ethyl acetate and n-hexane) fractions via liquid-liquid extraction. The effects of these polar and non-polar KYC4048 metabolites on the viability of breast cancer cells were then determined by MTT assay. Expression levels of Wnt/β-catenin pathway proteins were determined by Western blot analysis. Cell cycle and apoptosis were measured via fluorescence-activated cell sorting (FACS). The results revealed that non-polar KYC4048 metabolites induced cell death of breast cancer cells and decreased expression levels of WNT2B, β-catenin, and Wnt target genes (c-Myc and cyclin D1). Moreover, the n-hexane fraction of non-polar KYC4048 metabolites was found most effective in inducing apoptosis, necrosis, and cell cycle arrest, leading us to conclude that it can induce apoptosis of breast cancer cells through the Wnt/β-catenin pathway. These findings provide evidence that the n-hexane fraction of non-polar KYC4048 metabolites can be developed as a potential therapeutic agent for breast cancer via inhibition of the Wnt/β-catenin pathway.

Protease Activity of Lactic Acid Bacteria Isolated from Korean Traditional Fermented Food (전통 발효식품으로부터 Protease 활성을 보유한 유산균의 분리 및 동정)

  • Kook, Moo Chang;Cho, Seok Cheol;Park, Hoon;Kim, Seung Seop;Pyun, Yu Ryang;Choi, Woon Yong;Lee, Hyeon Yong
    • Food Engineering Progress
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    • v.15 no.2
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    • pp.182-187
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    • 2011
  • A proteolytic lactic acid bacterium was isolated from Korean traditional fermented foods. The isolate BV-26, which had a protease activity (24 U/mg-crude protein), was identified as Lactobacillus plantarum by the API 50CHL kit and 16S rDNA analysis (99.9% of homology), and named as L. plantarum BV-26. Cell growth and protease activity of L. plantarum BV-26 was determined in MRS broth using 5L jar fermentor at $30^{\circ}C$. The maximum growth of L. plantarum BV-26 was reached at 18 hr in MRS broth, while protease activity of BV-26 was detectable at 12 hr and the highest activity was obtained after 16 hr cultivation. Therefore, we expect that the proteolytic lactic acid bacteria, L. plantarum BV-26, may be used as a starter for the fermentation of animal feed. Especially, the fermentation of soybean meal with the strain can be applied for improving feed utilization.

A Study on the Frictional Resistance Chracteristics of Pressurized Soil Nailing Using Rapid Setting Cement (초속경 시멘트를 사용한 가압식 쏘일네일링의 주입시간에 따른 마찰저항특성에 관한 연구)

  • Lee, Arum;Shin, Eunchul;Lee, Chulhee;Rim, Yongkwan
    • Journal of the Korean Geosynthetics Society
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    • v.17 no.4
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    • pp.1-10
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    • 2018
  • Although the soil nailing method is generally used as a gravity grouting, the development and application of pressurized grouting method has recently increased to address the problem of joint generation and filling due to grouting. Pressurized grouting of the soil nailing method is generally used in combination with ordinary portland cement and water. In the field, the cement is mixed with the rapid setting cement to reduce curing time because ordinary portland cement takes more than 10 days to satisfy the required strength. In this study, uniaxial compression tests and laboratory tests were carried out to confirm the efficiency of the grouting material according to the mixing ratio of rapid setting cement. The mixing ratio of 30% grouting satisfies the required strength within 7 days and satisfies the optimum gel time. As a result of the laboratory test with granite weathered soil, the reinforcing effect was confirmed to be 1.5 times as compared with the gravity type at an injection time of 10 seconds and a strain of 15%. The friction resistance increases linearly with the increase of the injection time, but it is confirmed that the friction resistance decreases due to the hydraulic fracturing effect at the injection time exceeding the limit injection pressure. Numerical analysis was performed to compare the stability of slopes not reinforced with slopes reinforced with gravity and pressurized soil nailing.

Tension test considering the shape change of CFT Column-to-Beam Interior Diaphragm (CFT 기둥-보 내다이아프램의 형상변화를 고려한 인장실험)

  • Kwak, Sung-Shin;Choi, Byong-Jeong
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.20 no.2
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    • pp.67-75
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    • 2019
  • The diaphragm used for CFT columns has a small amount of steel to be used, but has a disadvantage that welding is difficult and openings are required because the steel tube and four sides must be welded. The improved diaphragm to be examined in this study was cut into four corners by cutting the center hole for concrete filling. In the improved diaphragm, the width of the center hole is the same as that of the previous diaphragm, but the width of the diaphragm contacting the steel tube is reduced, thereby reducing the welding length by about 70% compared to the previous diaphragm. The in-plane strain of each specimen was analyzed when the same load was applied to the interior diaphragm through a simple tensile test. Using the general FEM program(ANSYS 19.2), the analysis was performed under the same conditions as the actual simple tensile test, and the load transfer between the improved diaphragm and the previous diaphragm was compared. When the width of the diaphragm is equal to or smaller than the flange width, stress is concentrated from the end of the diaphragm, and when the flange width is larger, stress is concentrated at the center.

Draft genome sequence of Senegalimassilia sp. KGMB 04484 isolated from healthy Korean human feces (건강한 한국인 분변으로부터 분리된 Senegalimassilia sp. KGMB 04484 균주의 유전체 염기서열 초안)

  • Han, Kook-Il;Kang, Se Won;Kim, Ji-Sun;Lee, Keun Chul;Eom, Mi Kyung;Suh, Min Kuk;Kim, Han Sol;Park, Seung-Hwan;Lee, Ju Huck;Park, Jam-Eon;Oh, Byeong Seob;Yu, Seung Yeob;Choi, Seung-Hyeon;Lee, Dong Ho;Yoon, Hyuk;Kim, Byung-Yong;Lee, Je Hee;Lee, Jung-Sook
    • Korean Journal of Microbiology
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    • v.55 no.2
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    • pp.160-163
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    • 2019
  • Senegalimassilia sp. KGMB 04484 was isolated from fecal samples obtained from a healthy Korean. The whole-genome sequence of Senegalimassilia sp. KGMB 04484 was analyzed using the PacBio Sequel platform. The genome comprises a 2,748,041 bp chromosome with a G+C content of 61.18%, 2,300 total genes, 2,139 protein-coding gene, 21 rRNA genes, and 51 tRNA genes. Also, we found that strain KGMB 04484 had some genes for hydrolysis enzyme, fatty acid biosynthesis and metabolism in its genome based on the result of genome analysis. Those genes of KGMB 04484 may be related to regulation of human health and digest.

Exocyclic GpC DNA methyltransferase from Celeribacter marinus IMCC12053 (Celeribacter marinus IMCC12053의 외향고리 GpC DNA 메틸트랜스퍼라아제)

  • Kim, Junghee;Oh, Hyun-Myung
    • Korean Journal of Microbiology
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    • v.55 no.2
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    • pp.103-111
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    • 2019
  • DNA methylation is involved in diverse processes in bacteria, including maintenance of genome integrity and regulation of gene expression. CcrM, the DNA methyltransferase conserved in Alphaproteobacterial species, carries out $N^6$-adenine or $N^4$-cytosine methyltransferase activities using S-adenosyl methionine as a co-substrate. Celeribacter marinus IMCC12053 from the Alphaproteobacterial group was isolated from a marine environment. Single molecule real-time sequencing method (SMRT) was used to detect the methylation patterns of C. marinus IMCC12053. Gibbs motif sampler program was used to observe the conversion of adenosine of 5'-GANTC-3' to $N^6$-methyladenosine and conversion of $N^4$-cytosine of 5'-GpC-3' to $N^4$-methylcytosine. Exocyclic DNA methyltransferase from the genome of strain IMCC12053 was chosen using phylogenetic analysis and $N^4$-cytosine methyltransferase was cloned. IPTG inducer was used to confirm the methylation activity of DNA methylase, and cloned into a pQE30 vector using dam-/dcm- E. coli as the expression host. The genomic DNA and the plasmid carrying methylase-encoding sequences were extracted and cleaved with restriction enzymes that were sensitive to methylation, to confirm the methylation activity. These methylases protected the restriction enzyme site once IPTG-induced methylases methylated the chromosome and plasmid, harboring the DNA methylase. In this study, cloned exocyclic DNA methylases were investigated for potential use as a novel type of GpC methylase for molecular biology and epigenetics.