• Journal of Microbiology
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• 제42권4호
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• pp.365-368
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• 2004

The occurrence of strA-strB streptomycin-resistance genes within transposon Tn5393 was examined in Pseudomonas syringae pv. actinidiae, P. syringae pv. syringae, and P. marginalis, isolated from kiwifruit plants in Korea and Japan. PCR amplification with primers specific to strA-strB revealed that three of the tested Pseudomonas species harbored these genes for a streptomycin-resistance determinant. Tn5393, containing strA-strB, was also identified with PCR primers designed to amplify parts of tnpA, res, and tnpR. No IS elements were detected within tnpR, nor were they found in the intergenic region between tnpR and strA. Nucleotide sequence analysis indicated that the strA sequence of P. syringae pv. actinidiae contained a single nucleotide alteration at position 593 (CAA $\rightarrow$CGA), as compared to Tn5393a in P. syringae pv. syringae. This resulted in an amino acid change, from Gin to Arg.

• 미생물학회지
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• 제54권3호
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• pp.228-236
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• 2018

2015년 4월부터 2016년 3월까지 우리나라에서 채취한 패류로부터 분리한 대장균 중에서 고농도의 streptomycin에 저항성을 갖는 균주의 저항성 유전자를 조사하기 위하여 이 연구를 수행하였다. 패류 시료로부터 분리한 269개 대장균 중에서 최소저해농도(MIC)가 $1,024{\mu}g/ml$ 이상인 40개 균주를 선발하여 PCR을 통해 저항성 유전자를 확인하였다. 전체의 77.5%가 strA-strB 유전자를 가지고 있어 출현빈도가 가장 높았으며, 그 다음이 aadA 유전자로 30.0%에 달하였다. 6개 균주(15.0%)는 aadA와 strA-strB를 함께 가지고 있었다. 반면에 3개 균주(7.5%)는 조사된 두 유전자 어느 것도 가지고 있지 않았다. 동일한 저항성 유전자를 가지고 있으면서 MIC가 다른 이유를 real-time PCR로 규명하였다. aadA 또는 strA-strB를 단독으로 가지고 있는 균주들 사이에 MIC가 다른 이유는 가지고 있는 저항성 유전자의 copy number에서 차이가 나기 때문이었다.

• 식물병연구
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• 제13권2호
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• pp.88-92
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• 2007

우리나라 참다래 과수원에서 참다래 꽃썩음병을 일으키는 원인 세균인 Pseudomonas syringae pv. syringae를 분리하였다. 총 41개 균주 중 스트렙토마이신 저항성을 보이는 2개의 균주를 대상으로 PCR과 염기서열 결정을 통해 저항성 유전자 구조를 조사하였다. PCR결과 스트렙토마이신 저항성유전자는 Tn5359a에 들어 있는 strA-strB 구조인 것으로 밝혀졌다. Xanthomonas campestris와 Erwinia amylovora에서 알려진 IS6100과 IS1133은 발견되지 않았다. strA-strB의 염기서열은 이미 밝혀진 Tn5393a와 동일하였다. 두 스트렙토마이신 저항성 균주는 각각 3개의 플라스미드를 가지고 있었으며 저항성 유전자는 그 중 100kb의 플라스미드에 들어 있었다.

• The Plant Pathology Journal
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• 제37권5호
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• pp.489-493
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• 2021

Bacterial canker is a devastating disease of kiwifruit caused by the bacterium Pseudomonas syringe pv. actinidiae. Canker disease of kiwifruit in Korea has been controlled using streptomycin for more than two decades. Four streptomycin-resistant strains, belonging to biovar 2, which are found only in Korea, were collected between 2013 and 2014 from different orchards located in Jeju, Korea. The genetic background for streptomycin resistance among P. syringe pv. actinidiae strains were determined by examining the presence of strA-strB or aadA, which are genes frequently found in streptomycin-resistant bacteria, and a point mutation at codon 43 in the rpsL gene. All four streptomycin-resistant strains of P. syringe pv. actinidiae investigated in this study contained strA-strB as a resistant determinant. The presence of the aadA gene and a mutation in codon 43 of the rpsL gene was not identified.

• 한국동물위생학회지
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• 제35권1호
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• pp.1-8
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• 2012

To detect the virulence genes (invA and spvC) and antimicrobial resistance genes, polymerase chain reaction (PCR) was carried out using total 67 strains of S. Schwarzengrund isolated from pigs. As results, invA was detected from all 67 strains of S. Schwarzengrund, however, spvC was not at all. All 12 strains with ampicillin resistance, 15 strains with chloramphenicol resistance, 9 strains with kanamycin resistance, 1 strain with sulfamethoxazole/trimethoprim resistance, and 66 (98.5%) of 67 strains with tetracycline resistance carried TEM (${\beta}$-lactamase $bla_{TEM}$), cmlA (nonenzymatic chloramphenicol resistance), aphA1-Iab (aminoglycoside phosphotransferase), sulII (dihydropteroate synthase), and tetA (class A tetracycline resistance), respectively. All 63 strains with streptomycin resistance carried 3 aminoglycoside resistance genes, including aadA (aminoglycoside adenyltransferase), strA, and strB (streptomycin phosphotransferase). With respect to prevalence of antibiotic resistance genes occurred in S. Schwarzengrund, genes for strB (46.0%); strA and strB (30.2%); aadA, strA, and strB (9.5%); strA (7.9%); aadA and strB (3.2%); and aadA (3.2%) were detected by PCR.

• 한국자원식물학회:학술대회논문집
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• 한국자원식물학회 2021년도 춘계학술대회
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• pp.46-46
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• 2021

The first purpose of this study was to evaluate the scavenging capacity (SC) of DPPH and ABTS free radicals for ethanol extract (STR-E) and its active fractions from Sophora tonkinensis root (STR). Four different fractions from STR-E were prepared by using different types of solvents such as chloroform (STR-E-C), ethyl acetate (STR-E-EA), n-butanol (STR-E-B), and water (STR-E-W). STR-E-C showed the highest value of total phenolic content, while STR-E showed the highest value of total flavonoid and terpenoid content. In STR-E and its four fractions, STR-E-EA showed the strongest SC with the lowest SC50 values of the DPPH radicals and ABTS radicals. The second purpose of this study was to evaluate anti-inflammatory activity in the lipopolysaccharide (LPS)-induced RAW 264.7 macrophages treated with STR-E, STR-E-C, and STR-E-EA, respectively. No cytotoxic effect to RAW 264.7 cells was observed at 20 ~ 25 ㎍/ml of STR-E, 10 ㎍/ml of STR-E-C, and 5 ㎍/ml of the STR-E-EA, presenting cell viability values close to that of the untreated control (100%). STR-E, STR-E-C, and STR-E-EA significantly suppressed the LPS-induced nitric oxide (NO) in a dose-dependent manner. Results of reverse-transcription (RT)-qPCR analysis showed that the peak mRNA levels of IL-1β, TNF-α, iNOS, IL-6, and IL-10 were observed in the LPS-stimulated macrophages at 4 h, 2 h, 12 h, 12 h, and 12 h, respectively. The peak mRNA levels of IL-1β, TNF-α, iNOS, and IL-6 were significantly reduced in the LPS-stimulated macrophages co-treated with 20 ㎍/ml and 25 ㎍/ml of STR-E, respectively. In the case of IL-10, its peak mRNA level slightly increased without statistical significance. Compared with the LPS-stimulated macrophages, the peak mRNA levels of IL-1β, TNF-α, iNOS, and IL-6 reduced in the LPS-stimulated macrophages co-treated with 10 ㎍/ml and 20 ㎍/ml of STR-E-C, respectively. In contrast, the peak mRNA level of IL-10 significantly increased at 8 h. Compared with the LPS-stimulated macrophages, the peak mRNA levels of IL-1β, TNF-α, iNOS, and IL-6 reduced in the LPS-stimulated macrophages co-treated with 5 ㎍/ml and 10 ㎍/ml of STR-E-EA, respectively. In contrast, the peak mRNA level of IL-10 increased at 4 h. Taken together, our data indicated that STR-E, STR-E-C, and STR-E-EA activate macrophages to secrete both pro-inflammatory and anti-inflammatory cytokines.

• Journal of Oral Medicine and Pain
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• 제21권2호
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• pp.243-253
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• 1996

In order to be utilized as a database in forensic identification and parentage test, allelic frequency and genotype distribution of short tandem repeat(STR) F13B locus was analysed by polymerase chain reaction in 210 Korean adults who are not related. The results were as follows. 1. 3 alleles and 56 genotypes of F13B locus were detected and heterozygosity value was 48.6% and allelic diversity value was 0.639 and the power of discrimination was 0.804. 2. The observed each alleles and allelic frequency was 8(0.069), 9(0.193), 10(0.738). In conclusion, the allelic frequency of STR F13B locus in the Korean is considered as an useful DNA allelic profile for forensic identification, but it should be used with several other STR locus to get definitive conclusion of analysis for individual identification and parentage testing.

• 미생물학회지
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• 제38권4호
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• pp.299-305
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• 2002

2001년 경북지역의 설사환자로부터 분리된, Salmonella Enteritidis SY9 균주로부터 ampicillin, chloramphenicol, sulfonamide, streptomycin, tetracycline에 내성을 가지는 40 kb plasmid를 분리하였다. pCAST2 라고 명명한 이 다제내성 plasmid로부터 sulfonamide, streptomycin, tetracycline 내성유전자를 가지는 약 7 kb의 Sacl 단편을 클로닝 하였다. 이 7 kb 단편 염기서열의 내성유전자의 구조는 sulII-strA-strB-tetR-tetA의 집락으로 기존에 보고되지 않은 새로운 유전자 배열을 나타내었다. 본 연구에서는 내성유전자 집락을 검출할수 있는 primer를 제작하여 PCR 분석을 통해서 이들 구조를 탐지할 수 있는 방법을 제시하였다. 또한 PCR 분석을 통한 구조 비교로, 이 집락이 2002년 8월에 경북지역에서 산발적으로 발생한 Salmonella 균주에서도 발견됨을 확인하였다.

• 한국식품영양학회지
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• 제32권2호
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• pp.148-154
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• 2019

The aim of this study was to select compounds for the standardization of fermented Kalopanax pictus Nakai (KP-F), to develop the analysis method using HPLC-PDA and to perform method validation. KP-F is a fermented powder developed to improve the original physiological activities and create a new functionality. Eleutheroside E, Acanthoside B, and Syringaresinol were selected as the standard compounds and developed our own method for simultaneous analysis. The analyte was isolated using C18 column with a gradient elution of 0.05 M phosphoric acid in water and methanol as the mobile phase at a flow rate of 1 mL/min and detected at 210 nm. As a result, all standard compounds showed good linearity with an $R^2$ (coefficient of correlation) of 1.000 and for the limit of detection range of $0.710{\sim}0.831{\mu}g/mL$, and the limit of quantification as $2.150{\sim}2.520{\mu}g/mL$. The precision was RSD (%) of less than 4.80%, while the accuracy was 4.70%>RSD (%) for the range 102.44~110.48%. In conclusion, the developed analysis method is suitable for the detection of Eleutheroside E, Acanthoside B, and Syringaresinol in KP-F.

• Journal of Microbiology
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• 제41권1호
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• pp.16-21
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• 2003

We have collected eight high-level streptomycin-resistant strains of Pseudomonas marginalis and P. syringae pv. actinidiae which were isolated from kiwifruit orchards in Korea and Japan, The molecular mechanisms of resistance were investigated by the PCR, susceptibility tests, and nucleotide sequence analysis. Of the eight high-level streptomycin-resistant strains, four harbored strA-strB genes, which encode streptomycin-inactivating enzymes. While the three Korean strains of R marginalis did not have plasmid and carried the resistant genes in the chromosomes, the Japanese strain of P. syringae pv. actinidiae had a plasmid containing strA-strB genes. The myomycin susceptibility test demonstrated that the high-level resistance to streptomycin of the remaining four strains is associated with mutations in the rpsL gene. Nucleotide sequence analyses revealed that they contain a single base-pair mutation in codon 43 of their rpsL gene.