• Title/Summary/Keyword: sequence length

Search Result 1,234, Processing Time 0.023 seconds

ATM Traffic Analysis: Burst Scale Probability Function

  • Kemelmacher, E.Rozenshine
    • Proceedings of the IEEK Conference
    • /
    • 2002.07b
    • /
    • pp.876-879
    • /
    • 2002
  • The paper presents the analysis and results of traffic measurements in the 155 Mbit/s real working ATM backbone network. The traffic is described as an ordered sequence of real-time cells. In this paper we analyze two timescales in which some form of a stochastic process is taking place: cell scale and burst scale. We present another way to describe the cell flow in ATM networks by definition the function, designed to be the probability of the burst of length ∫in n sequential slots.

  • PDF

A New Resource Allocation Algorithm for Low Power Architecture (저 전력 아키텍처 설계를 위한 새로운 자원할당 알고리즘)

  • 신무경;인치호
    • Proceedings of the IEEK Conference
    • /
    • 2000.11b
    • /
    • pp.329-332
    • /
    • 2000
  • This paper proposed resource allocation algorithm for the minimum power consumption of functional unit in high level synthesis process as like DSP which is circuit to give many functional unit. In this paper, the proposed method though high level simulation find switching activity in circuit each functional unit exchange for binary sequence length and value bit are logic one value. To used the switching activity find the allocation with minimal power consumption, the proposed method visits all control steps one by one and determines the allocation with minimal power consumption at each control step.

  • PDF

A Real Time Path Planning in Dynamic Environment (동적 환경에서의 실시간 경로 설정)

  • Kwak, Jae-Hyuk;Lim, Joon-Hong
    • Proceedings of the IEEK Conference
    • /
    • 2006.06a
    • /
    • pp.939-940
    • /
    • 2006
  • Many researches on path planning and obstacle avoidance for the fundamentals of mobile robot have been done. In this paper, we propose the algorithm of path planning and obstacle avoidance for mobile robot. We call the proposed method Random Access Sequence(RAS) method. RAS method using obstacle information from variable sensors is useful to get minimum path length to goal.

  • PDF

MLS for Building Acoustics Measurement (건축음향을 위한 MLS 측정방법)

  • Borjabad, Roberto
    • Proceedings of the Korean Society for Noise and Vibration Engineering Conference
    • /
    • 1996.10a
    • /
    • pp.386-393
    • /
    • 1996
  • The paper describes how a Maximum Length Sequence(MLS) and correlation technique in the form of Hadamard transformation may be applied for the measurement of airborne sound reduction. It is shown that in most cases, the values obtained by the MLS technique will be equal to the expected values obtained by the classical method. However, due to the correlation process involved, the MLS method will be much less sensitive to disturbances from extraneous noise. The described method has been implemented in an RTA acoustic analyser.

  • PDF

Biological Characterization and Sequence Analysis of Cucumber mosaic virus isolated from Capsicum annuum

  • Kim, Min-Jea;Choi, Seung-Kook;Yoon, Ju-Yeon;Choi, Jang-Kyung;Ryu, Ki-Hyun
    • The Plant Pathology Journal
    • /
    • v.21 no.2
    • /
    • pp.142-148
    • /
    • 2005
  • Whereas most of isolates of Cucumber mosaic virus(CMV) can induce green mosaic systemic symptoms on zucchini squash, foliar symptoms of a pepper isolate of CMV (Pf-CMV)-infected zucchini squash revealed systemic chlorotic spots. To assess this biological property, infectious full-length cDNA clones of Pf-CMV were constructed using long-template RT-PCR. The complete nucleotide sequences of RNA2 and RNA3 of Pf-CMV were determined from the infectious fulllength cDNA clones, respectively. RNA 2 and RNA3 of Pf-CMV contain 3,070 nucleotides and 2,213 nucleotides, respectively. Overall sequence homology of two RNAs revealed high similarity (90%) between CMV strains, and 60% similarity to those of Tomato aspermy virus and Peanut stunt virus strains. By sequence analysis with known representative strains of CMV, Pf- CMV belongs to a typical member of CMV subgroup IA. The virus has high evolutionary relationship with Fny-CMV, but the pathology of Pf-CMV in zucchini squash was quite different from that of Fny-CMV. The pesudorecombinant virus, F1P2P3, induced chlorotic spot leaf symptom and timing of systemic symptom in squash plants, similar to the plants infected by Pf-CMV. No systemic symptoms were observed when Pf-CMVinoculated cotyledons were removed at 5 days postinoculation (dpi) while Fny-CMV showed systemic symptom at 2 dpi. These results suggest that the pepper isolate of CMV possesses unique pathological properties distinguishable to other isolates of CMVs in zucchini squash.

Characterization and Sequence Analysis of a Lily Isolate of Cucumber mosaic virus from Lithium tsingtauense

  • Ryu, Ki-Hyun;Park, Hye-Won;Park, Jang-Kyung
    • The Plant Pathology Journal
    • /
    • v.18 no.2
    • /
    • pp.85-92
    • /
    • 2002
  • A new isolate of Cucumber mosaic virus (CMV), identified as Li-CMV was isolated from a diseased Korean native lily (Lithium tsingtauense Gilg). Biological and serological properties of Li-CMV were characterized, and reverse transcription-polymerase chain reaction (RT-PCR) analysis, restriction enzyme profiling of RT-PCR products, and nucleotide sequence analysis of RNA3 of the virus were performed in this study. Remarkable differences in symptoms between Li-CMV and ordinary CMV strains were found in tobacco plants and Datura stramonium. Li-CMV-infected tobacco plants (cv. Xanthi-nc and cv. Samsun) induced chlorotic ringspots on uninoculated upper leaves, and the symptom expression was delayed or faint whereas, ordinary CMV strains induced green mosaic symptoms on the plant. Systemic infections were observed on Nicotiana benthamiana with severe mosaic symptom. Restriction mapping analysis of RT-PCR products using MspI showed that Li-CMV belonged to CMV subgroup I. A full-length CDNA copy of RNA3 for the virus was amplified by RT-PCR, cloned, and its complete nucleotide sequence was determined. The RNA3 of Li-CMV was 2, 232 nucleotides long, and consisted of two open reading frames of 843 and 657 bases encoding 3a protein (movement protein) and coat protein, respectively. Results of this study indicate that Li-CMV is a novel strain and belongs to subgroup I of CMV in the genus Cucumovirus.

Genetic Similarity Between Jujube Witches¡?Broom and Mulberry Dwarf Phytoplasmas Transmitted by Hishimonus sellatus Uhler

  • Cha, Byeongjin;Han, Sangsub
    • The Plant Pathology Journal
    • /
    • v.18 no.2
    • /
    • pp.98-101
    • /
    • 2002
  • Using phytoplasma universal primer pair Pl and P7, a fragment of about 1.8 kb nucleotide sequences of 16S rRNA gene and 16S-23S rRNA intergenic spacer region, and a portion of 23S rRNA gene of jujube witches'broom (JWB) and mulberry dwarf(MD) phytoplasmas were determined. The nucleotide sequences of JWB and MD were 1,850 bp and 1,831 bp long, respectively. The JWB phytoplasma sequence was aligned with the homologous sequence of MD phytoplasma. Twenty-eight base insertions and nine base deletions were found in the JWB phytoplasma sequence compared with that of MD phytoplasma. The similarity of the aligned sequences of JWB and MD was 84.8%. The near-complete 16S rRNA gene DNA sequences of JWB and MD were 1,529 bp and 1,530 bp in length, respectively, and revealed 89.0% homology. The 16S-23S rRNA intergenic spacer region DNA sequences were 263 bp and 243 bp in lengths respectively, while homology was only 70% and the conserved tRNA-lle gene of JWB and MD was located into the intergenic space region between 16S-23S rRNA gene. The nucleotide sequences were 77 bp long in both JWB and MD, and showed 97.4% sequence homology. Based on the phylogenetic analysis of the two phytoplasmas, the JWB phytoplasma belongs to the Elm yellow phytoplasma group (16S rV), whereas, the MD phytoplasma belongs to the Aster yellow group (16S rI).

Survey of the Incidence of Viral Infections in Calanthe spp. and Characterization of a GW Isolate of Cymbidium mosaic virus in Korea

  • Park, Chung Youl;Baek, Da Some;Oh, Jonghee;Choi, Jong-Yoon;Bae, Dae Hyeon;Kim, Jeong-Seon;Jang, Gil-Hun;Lee, Su-Heon
    • Research in Plant Disease
    • /
    • v.22 no.2
    • /
    • pp.65-71
    • /
    • 2016
  • Cymbidium mosaic virus (CymMV) is a major virus infecting orchid plants and causing economic loss. In this study, the incidence of viral infection in Calanthe spp. at the Korean Institute of Calanthe was investigated using reverse transcription polymerase chain reaction. The CymMV infection rate was 42%, and the two viruses Odontoglossum ringspot virus and Cucumber mosaic virus had frequencies of 8% and 2%, respectively. Additionally, we characterized an isolate of CymMV, CymMV-GW, using biological tests and examined the nucleotide sequence properties of its complete genome. CymMV-GW induced chlorotic ringspots and chlorotic spot symptoms in inoculated leaves of Chenopodium amaranticolor and Nicotiana benthamiana, respectively. In this study, we have for the first complete genome sequence of CymMV-GW in Korea. The CymMV-GW genome was 6,225 nucleotides in length, excluding the poly-(A) tail, and showed whole-genome nucleotide and amino acid sequence identities of 97.7% and 100%, respectively, with the NJ-1 isolate of CymMV. Here, we report the complete genome sequence of the CymMV-GW isolate and viral infection rates for Calanthe spp. in Korea.

Genetic diversity of Kalopanax pictus populations in Korea based on the nrDNA ITS sequence

  • Sun, Yan-Lin;Lee, Hak-Bong;Kim, Nam-Young;Park, Wan-Geun;Hong, Soon-Kwan
    • Journal of Plant Biotechnology
    • /
    • v.39 no.1
    • /
    • pp.75-80
    • /
    • 2012
  • $Kalopanax$ $pictus$ is a long-lived deciduous perennial tree in the family Araliaceae mainly distributed in the East Asia. In Korea, this species is of ecological and medical importance. Because typical populations of this species are small and distributed in patches, $K.$ $pictus$ has been considered as a narrow habitat species. To understand the genetic diversity and population structure of this species, the sequence variation of the nuclear ribosomal DNA (nrDNA) internal transcribed spacer (ITS) region was analyzed among 18 different $K.$ $pictus$ populations in the present investigation. The nrDNA ITS sequences of Korean populations investigated in this study showed identical of 616 bp in length, and no any nucleotide variation was found in the entire nrDNA ITS region sequence. This result suggested that the $K.$ $pictus$ populations in Korea might belong to the same isolate, and no mutation was found in the nrDNA ITS region. Compared with other known ITS sequence sources from $K.$ $pictus$ populations, only four variable nucleotide sites were found within the entire ITS region. Very narrow genetic diversity appearing in the population level of $K.$ $pictus$ makes us hypothesize that their relatively isolated habitats. The long-lived traits might be one main reason. However, another probability was that the nr-DNA ITS region might be noneffective in classifying populations of $K.$ $pictus$. Thus, to further understand the phylogenetic relationship of $K.$ $pictus$ populations, more samplings should be performed based on more DNA sequences.

Molecular Cloning and Characterization of a Novel Metallothionein Isoform Expressed in Tiger Shark(Scyliorhinus torazame) (두툽상어(Scyliorhinus torazame)Metallothionein cDNA의 cloning 및 이의 분자적 특성)

  • Noh, Jae-Koo;Nam, Yoon-Kwon;Kim, Dong-Soo
    • Journal of fish pathology
    • /
    • v.14 no.2
    • /
    • pp.59-64
    • /
    • 2001
  • A complementary DNA encoding metallothionein(MT), a heavy metal-responsive protein was cloned from a cartilaginous shark species. Scyliorhinus torazame. An expressed sequence tag(EST)from the shark liver, which showed high similarity with a MT gene, was isolated and its full-length sequence(390bp)was determined. The putative shark MT cDNA sequence contained an open reading frame consisting 68 amino acids and 182bp of 3-untranslated region including the poly (A+) signal. The deduced amino acid sequence was 41-54% identical to those of other animals including mammals and fish species. Tiger shark MT cDNA showed high conservation in the Cys regions. however, peculiarly contained not only additional five amino acids just prior to the conserved beta-domain but also a Ser residue at C terminal, which has not been seen in other MT sequences.

  • PDF