• Title/Summary/Keyword: binding method

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A study on Electronic properties of finite length effect in Carbon nanotubes for Carbon Nanoscale device : Tight binding theory (나노디바이스를 위한 탄소 나노튜브의 유한길이에 따른 전기적 특성 연구 : Tight binding 이론)

  • 문원하;강진철;황호정
    • Proceedings of the IEEK Conference
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    • 2000.06b
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    • pp.103-106
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    • 2000
  • The electronic properties of carbon nanotube are currently the focus of considerable interest. In this paper, the electronic properties of finite length effect in carbon nanotube for cabon nanoscale device is presented. To calculate the electronic properties of carbon nanotube, Empirical potential method (Brenner' hydrocarbon potential) for carbon and Tight binding molecular dynamic (TBMD) simulation are used. As a result of study, we have known that the value of the band gap decreases with increasing the length of the tube. The energy band gap of (6, 6) armchair carbon nanotube have the ranges between 0.3 eV and 2.5 eV. Also, our results were compared with the results of the other computational techniques. As that result, our results are very well united.

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NMR Study on Binding Interactions of Cationic Porphyrin Derivatives with double helical $d(CGCGAATTCGCG)_2$

  • Huh, Sungho;Hong, Seokjoo
    • Journal of the Korean Magnetic Resonance Society
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    • v.5 no.2
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    • pp.118-129
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    • 2001
  • Binding interactions of cationic porphyrins, T4MPyP and TMAP with DNA oligomer d(CGCGAATTCGCG), were studied with NMR spectroscopy, W and CD spectroscopic method. Two porphyrins showed significant differences in NMR, UV and CD data upon binding to DNA. T4MPyP was considered to position more closely to DNA bases through partial intercalation as well as ionic intercalation between the positive charges of porphyrin and phosphate group of DNA at 5’-GC-3’steps. Contrast to this, TMAP was thought to bind to phosphate of DNA more or less outside of the groove.

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Drug Interaction of Sulfonamides and Furosemide (I)-Displacement Effect of Furosemide on Protein Binding of Sulfonamides in Bovine Serum Albumin- (설파제와 푸로세미드 약물상호작용(제 1보)-설파제의 우혈청 단백결합에 대한 푸로세미드의 치환효과-)

  • Lee, Jin-Hwan;Choi, Jun-Shik;Lee, Chong-Ki;Burm, Jin-Pil
    • Journal of Pharmaceutical Investigation
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    • v.19 no.1
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    • pp.15-20
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    • 1989
  • The displacement of protein bound sulfonamides (sulfisoxazole, sulfamethoxazole, sulfisomidine) by furosemide was investigated in bovine serum albumin by equilibrium dialysis method. Furosemide $(2{\times}10^{-4}M)$ in bovine serum albumin ($7.24{\times}10^{-5}$, $1.45{\times}10^{-4}$, $2.89{\times}10^{-4}M$). Sulfisoxa캐1e and furosemide were bound reversibly to bovine serum albumin and competitive for the same binding sites when administered together. Consequently, dosage regimen of sulfisoxazole should be adjusted carefully when sulfisoxazole is administered along with furosemide.

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One-Step Selection of Artificial Transcription Factors Using an In Vivo Screening System

  • Bae, Kwang-Hee;Kim, Jin-Soo
    • Molecules and Cells
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    • v.21 no.3
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    • pp.376-380
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    • 2006
  • Gene expression is regulated in large part at the level of transcription under the control of sequence-specific transcriptional regulatory proteins. Therefore, the ability to affect gene expression at will using sequencespecific artificial transcription factors would provide researchers with a powerful tool for biotechnology research and drug discovery. Previously, we isolated 56 novel sequence-specific DNA-binding domains from the human genome by in vivo selection. We hypothesized that these domains might be more useful for regulating gene expression in higher eukaryotic cells than those selected in vitro using phage display. However, an unpredictable factor, termed the "context effect", is associated with the construction of novel zinc finger transcription factors--- DNA-binding proteins that bind specifically to 9-base pair target sequences. In this study, we directly selected active artificial zinc finger proteins from a zinc finger protein library. Direct in vivo selection of constituents of a zinc finger protein library may be an efficient method for isolating multi-finger DNA binding proteins while avoiding the context effect.

2-Aminothiazolinium Based Tripodal Receptors:Synthesis and Recognition of Oxoanions

  • Nguyen, Quynh Pham Bao;Le, Thanh Nguyen;Kim, Taek-Hyeon
    • Bulletin of the Korean Chemical Society
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    • v.30 no.8
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    • pp.1743-1748
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    • 2009
  • Novel 2-aminothiazolinium based tripodal receptors were designed and synthesized. The binding property of these receptors toward various anions was investigated by the isothermal titration calorimetry (ITC) method. Receptor 4 recognized the acetate anion with 1:1 stoichiometry, whereas it bound the other oxoanions such as sulfate and phosphate in complex modes. By modifying the phenyl groups at the 4-position of the thiazoline rings of the tripodal receptor 4 to induce a mutual aromatic stacking interaction among the three ligands, receptor 10 showed totally different binding behavior, which gave rise to the 1:1 binding mode for the sulfate anion. This result was confirmed by ESI MS spectrometry.

Quantum Chemical Analysis of Structure-Activity Relationships in Salicylic Acids as Anti-inflammatory Drugs (소염제로서의 살리씰산유도체의 구조-활성 상관관계에 관한 양자화학적 해석)

  • Rhee, Jong-Dal;Koo, Bon-Ki
    • YAKHAK HOEJI
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    • v.33 no.2
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    • pp.87-100
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    • 1989
  • Salicylic acids as anti-inflammatory agents were analyzed by ab initio, quantum chemical methods to study the possible modes of binding to the receptor. As the result of multiple regression analysis of reactivity indices and interpretation of normalized frontier orbital charges of drugs, potency seems to be related to energy of HOMO and LUMO at the 5 position of benzene ring, and in the 5-phenyl substituted case, the para position of substituting ring is important. The binding occurs first at the positive site of its receptor. The charge density exhibited by the frontier orbitals suggests that charge moves from receptor site to carboxyl group. The electrostatic orientation effect makes an important contribution to the binding of the active molecules to their receptors. Also the electrostatic potential model may be able to rationalize the source of activity or inactivity of the drugs under investigation.

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A Study on the Preparation Method of Geopolymeric Concrete using Specifically Modified Silicate and Inorganic Binding Materials and Its Compressive Strength Characteristics

  • Kim, Jong Young
    • Journal of the Korean Ceramic Society
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    • v.52 no.2
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    • pp.150-153
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    • 2015
  • Recently, research on geopolymeric concrete that does not use cement as a binder has been actively investigated. Geopolymeric concrete is cement-free concrete. Masato, ocher and/or soil has been solidified into geopolymeric concrete by the reaction of specifically modified silicate as an alkali activator and inorganic binding materials such as blast furnace slag, fly ash or meta-kaolin, which is cured at room temperature to exhibit high compressive strengths. Based on the results, this study shows how geopolymeric concrete that uses specifically modified silicate and inorganic binding materials is implemented as eco-cement with no cement.

Spectroscopic investigations on the interaction of bovine serum albumin with amoxicillin and cloxacillin

  • BHALCHANDRA P. KAMAT,
    • Journal of Photoscience
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    • v.12 no.1
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    • pp.11-15
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    • 2005
  • The mechanism of interaction of two drugs viz., amoxicillin and cloxacillin with bovine serum albumin has been investigated using fluorescence absorption and circular dichroism spectroscopy. The quenching mechanism of fluorescence of bovine serum albumin by amoxicillin and cloxacillin was discussed. The binding sites number n and apparent binding constant Kwere measured by fluorescence quenching method. The thermodynamic parameters obtained from data at different temperatures were calculated. The distance r between donor (bovine serum albumin) and acceptor (amoxicillin and cloxacillin) was obtained according to Forster theory of non-radiative energy transfer. The effect of common ions on binding constant was also investigated. The results of synchronous fluorescence spectra, UV-vis absorption spectra and circular dichroism of BSA in presence of amoxicillin and cloxacillin show that the conformation of bovine serum albumin changed

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Complexes of Polyvalent Metal Ions (Ⅶ). Complexes of Cadmium, Cobalt and Nickel with Hydroxycarboxylic Acids in Aqueous, Ethanol-Water and Acetone-Water Solutions$^*$

  • Park, Joon-W.;Mukherjee, C.
    • Bulletin of the Korean Chemical Society
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    • v.1 no.3
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    • pp.105-109
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    • 1980
  • A general spectroscopic method is described for studies on the complex formation between metal ions and ligands, and is applied to $Cu^{2+}$ and $Ca^{2+}$binding to glycosaminoglycans. The order of binding constants for both ions is heparin >dermatan sulfate >chondroitin sulfate. The electrostatic forces are shown to be the predominant factor in the interaction. The 2- to 3-fold higher affinity for $Cu^{2+}$ than for $Ca^{2+}$ is obtained for heparin and dermatan sulfate, but little difference for chondroitin sulfate. These results are explained as chelation of both carboxyl and sulfate groups to $Cu^{2+}$ in former cases. The difference of binding constants among glycosaminoglycans is related to proposed various biological functions of the biopolymers.

Potentiometric Homogeneous Enzyme-Linked Binding Assays for Riboflavin and Riboflavin Binding Protein

  • 김진목;김혜진;김미정;이동주;한상현;차근식
    • Bulletin of the Korean Chemical Society
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    • v.17 no.11
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    • pp.1018-1022
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    • 1996
  • Adenosine deaminase (ADA) has been utilized as the label in devising a potentiometric homogeneous assay for riboflavin and riboflavin binding protein (RBP). The proposed homogeneous assay method employs an ADA-biotin conjugate as the signal generator and an avidin-riboflavin conjugate as the signal modulator in the solution phase. The catalytic activity of the ADA-biotin conjugate is inhibited in the presence of an excess amount of the avidin-riboflavin conjugate, and the observed inhibition is reversed in an amount proportional to the concentration of RBP added. When the analyte riboflavin is added to this mixture of ADA-biotin, avidin-riboflavin and RBP, the activity of the enzyme conjugate is re-inhibited in an amount proportional to the concentration of riboflavin. Since the enzyme label used in this system is ADA, an ammonia-producing enzyme, a potentiometric rather than photometric detection scheme is used to monitor the enzymatic activity in the assay.