• Title/Summary/Keyword: Weak interactions

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Theoretical Studies for the Supercritical CO2 Solubility of Organophosphorous Molecules: Lewis Acid-Base Interactions and C-H···O Weak Hydrogen Bonding

  • Kim, Kyung-Hyun;Kim, Yong-Ho
    • Bulletin of the Korean Chemical Society
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    • v.28 no.12
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    • pp.2454-2458
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    • 2007
  • Exploring the basic concepts for the design of CO2-philic molecules is important due to the possibility for “green” chemistry in supercritical CO2 as substitute solvent systems. The Lewis acid-base interactions and C?H…O weak hydrogen bonding were suggested as two key factors for the solubility of CO2-philic molecules. We have performed high level quantum mechanical calculations for the van der Waals complexes of CO2 with trimethylphosphate and trimethylphosphine oxide, which have long been used for metal extractants in supercritical CO2 fluid. Structures and energies were calculated using the MP2/6-31+G(d) and recently developed multilevel methods. These studies indicate that the Lewis acid-base interactions have larger impact on the stability of structure than the C?H…O weak hydrogen bonding. The weak hydrogen bonds in trimethylphosphine oxide have an important role to the large supercritical CO2 solubility when a metal is bound to the oxygen atom of the P=O group. Trimethylphosphate has many Lewis acid-base interaction sites so that it can be dissolved into supercritical CO2 easily even when it has metal ion on the oxygen atom of the P=O group, which is indispensable for a good extractant.

Studies of Inter/intramolecular Weak Interactions with CH… S; and S…arene Interaction in Symmetrical and Dissymmetrical Models

  • Dubey, Rashmi;Tewari, Ashish K.;Ravikumar, K.;Sridhar, B.
    • Bulletin of the Korean Chemical Society
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    • v.31 no.5
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    • pp.1326-1330
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    • 2010
  • Evidences have proved the versatile role of sulfur atom in supramolecular chemistry. $^1$Presence of S atom in the molecule usually results in the specific structural properties of molecules. In the present study, $S{\cdots}arene$, $N{\cdots}arene$, $CH{\cdots}{\pi}$, $CH{\cdots}S$ and $CH{\cdots}N$ type of weak interactions stabilize the conformation and self assembly of symmetrical as well as dissymmetrical molecules.

Understanding DFT Calculations of Weak Interactions: Density-Corrected Density Functional Theory

  • Park, Hansol;Kim, Yeil;Sim, Eunji
    • Journal of the Korean Chemical Society
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    • v.63 no.1
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    • pp.24-28
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    • 2019
  • In this work, we discuss where the failure of Kohn-Sham Density Functional Theory (DFT) occurs in weak interactions. We have adopted density-corrected density functional calculations and dispersion correction separately to find out whether the failure is due to density-driven error or functional error. The results of Benzene Ar complex, one of the most common examples of van der Waals interactions, show that DFT calculations of van der Waals interaction suffer from functional error, rather than density-driven error. In addition, errors in DFT calculations of the S22 dataset, which contains small to relatively large (30 atoms) complexes with non-covalent interactions, are governed by functional errors.

ENVIRONMENTAL DEPENDENCE OF WARPS IN SPIRAL GALAXIES

  • Ann, Hong Bae;Bae, Hyun Jeong
    • Journal of The Korean Astronomical Society
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    • v.49 no.6
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    • pp.239-253
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    • 2016
  • We determined the warp parameters of 192 warped galaxies which are selected from 340 edge-on galaxies using color images as well as r-band isophotal maps. We derive the local background density (${\Sigma}_n$) to examine the dependence of the warp amplitudes on the galaxy environment. We find a clear trend that strongly warped galaxies are likely to be found in high density regions where tidal interactions are supposed to be frequent. However, the correlation between ${\alpha}_{\omega}$ and ${\Sigma}_n$ is too weak for weakly warped galaxies (${\alpha}_{\omega}$ < $4^{\circ}$) and the cumulative distributions of weakly warped galaxies are not significantly different from those of galaxies with no detectable warps. This suggests that tidal interactions do not play a decisive role in the formation of weak warps.

A New Experiment on Interaction of Normal Shock Wave and Turbulent Boundary Layer in a Supersonic Diffuser (초음속디퓨져에서 발생하는 수직충격파의 난류경계층의 간섭에 관한 실험)

  • 김희동;홍종우
    • Transactions of the Korean Society of Mechanical Engineers
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    • v.19 no.9
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    • pp.2283-2296
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    • 1995
  • Experiments of normal shock wave/turbulent boundary layer interaction were conducted in a supersonic diffuser. The flow Mach number just upstream of the normal shock wave was in the range of 1.10 to 1.70 and Reynolds number based upon the turbulent boundary layer thickness was varied in the range of 2.2*10$^{[-994]}$ -4.4*10$^{[-994]}$ . The wall pressures in streamwise and spanwise directions were measured for two test cases, in which the turbulent boundary layer thickness incoming into the supersonic diffuser was changed. The results show that the interactions of normal shock wave with turbulent boundary layer in the supersonic diffuser can be divided into three patterns, i.e., transonic interaction, weak interaction and strong interaction, depending on Mach number. The weak interactions generate the post-shock expansion which its strength is strong as the Mach number increases and the strong interactions form the pseudo-shock waves. From the spanwise measurements of wall pressure, it is known that if the flow Mach number is low, the interacting flow fields essentially appear two-dimensional, but they have an apparent 3-dimensionality for the higher Mach numbers.

Advanced techniques of solution nuclear magnetic resonance spectroscopy for structural investigation of protein-protein interaction

  • Sugiki, Toshihiko;Lee, Young-Ho
    • Journal of the Korean Magnetic Resonance Society
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    • v.22 no.4
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    • pp.76-81
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    • 2018
  • Investigation of the protein-protein interaction mode at atomic resolution is essential for understanding on the underlying functional mechanisms of proteins as well as for discovering druggable compounds blocking deleteriou interprotein interactions. Solution NMR spectroscopy provides accurate and precise information on intermolecular interactions even for weak and transient interactions, and it is also markedly useful for examining the change in the conformation and dynamics of target proteins upon binding events. In this mini-review, we comprehensively describe three unique and powerful methods of solution NMR spectroscopy, paramagnetic relaxation enhancement (PRE), pseudo-contact shift (PCS), and residual dipolar coupling (RDC), for the study on protein-protein interactions.

In-cell nuclear magnetic resonance spectroscopy for studying intermolecular interactions

  • Sugiki, Toshihiko;Lin, Yuxi;Lee, Young-Ho
    • Journal of the Korean Magnetic Resonance Society
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    • v.23 no.1
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    • pp.33-39
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    • 2019
  • Studies on the interactions of proteins with partner molecules at the atomic resolution are essential for understanding the biological function of proteins in cells and for developing drug molecules. Solution NMR spectroscopy has shown remarkably useful capability for investigating properties on the weak to strong intermolecular interactions in both diluted and crowded solution such as cell lysates. Of note, the state-of-the-art in-cell NMR method has made it possible to obtain atomistic information on natures of intermolecular interactions between target proteins with partner molecules in living cells. In this mini-review, we comprehensively describe the several technological advances and developments in the in-cell NMR spectroscopy.

Theoretical Mechanism Studies on the Enantioselectivity of aza-MBH-type Reaction of Nitroalkene to N-tosylimine Catalyzed by Thiourea-tertiary Amine

  • Lu, Nan;Wang, Huatian;Wang, Yangping
    • Bulletin of the Korean Chemical Society
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    • v.34 no.12
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    • pp.3591-3596
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    • 2013
  • The enantioselective aza-Morita Baylis Hillman reaction of nitroalkene and N-tosylimine catalyzed by thiourea-tertiary amine has been investigated using density functional theory. Enantioselectivity is dominated by the cooperative effect of non-covalent and weak covalent interactions imposed by different units of catalyst. As Lewis base, the tertiary amine unit activates nitroalkene via weak covalent bond. The weak covalent interaction orients the reaction in a major path with smaller variations of this bond. The aromatic ring unit activates N-tosylimine via ${\pi}-{\pi}$ stacking. The non-covalent interaction selects the major path with smaller changes of the efficient packing areas. Thiourea unit donates more compact H-bonded network for species of the major path. The calculated ee value in xylene solution phase (97.6%) is much higher than that in N,N-Dimethylformamide (27.2%). Our conclusion is also supported by NBO analysis.

Determination of a Weak Exchange Interaction in Magnetically Coupled Cluster System by EPR Singlet-Triplet Transition Lines

  • Cho, Young-Hwan;Hyunsoo So
    • Proceedings of the Korean Magnetic Resonance Society Conference
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    • 2002.08a
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    • pp.70-71
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    • 2002
  • Exchange-coupled cluster of transition-metal ions are relevant to many different scientific areas, ranging from chemistry to solid-state physics, biology, material science and has been the subject of much research in recent years(1,2). Single crystal EPR spectroscopy works as a very effective tool for the measurement of J values for small exchange interactions. This makes EPR technique very suitable for detection of weak exchange coupling transmitted over long distances via extended atomic and melecular bridges. Large polyoxometallates (3) may provide ideal structural environments for the study of interactions between paramagnetic ions. The detailed nature of magnetic interaction (positive sign and magnitude of J~0.006 $cm^{-1}$ /) was clearly determined for di-copper(II) system by single crystal EPR spectroscopy (4). The single-triplet (S-T) transitions are forbidden by different symmetries of the wave functions. However, when the singlet ground state is mixed into triplet states, the S-T transitions can be allowed and observed as weak lines. These weak S-T lines are positioned symmetrically with respect to the main transitions in the distance equals to 2J from the center of the spectrum. This lines allow one to determine the J-value with very high accuracy when │J│ < hv 0.32 $cm^{-1}$ /. Unfortunately, the S-T transitions in the single crystal were detected by EPR method only in a few complexes until now. We have measured single-triplet transition lines for several magnetically coupled cluster systems and determined their J values accurately. The temperature dependency of J was studied by monitoring the changes in S-T.

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