• Title/Summary/Keyword: Genetic evaluation

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Biomonitoring Human Exposure to VOCs : Using Individual Susceptibility Markers

  • Kim, Jung-Hyun;Kim, Dae-Seon;Park, Jae-Sung;Kang, Tack-Shin
    • Proceedings of the Korean Environmental Health Society Conference
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    • 2003.06a
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    • pp.187-191
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    • 2003
  • In this study, biomonitoring methods were developed to measure BTEXs exposure level in the air, metabolites of benzene and toluene in human urine, individual susceptibility markers in human blood for evaluation of the health effects about environmental pollution. We have also performed a small-scaled molecular epidemiology study on residents in Chuncheon and workers in workplace for these method applications. The workers in workplace were surveyed as study areas, and the residents in Chuncheon which is in the suburban area were surveyed as comparative areas in this study. Actually, 31 workers in as target group and 33 residences in as control group this epidemiological study. The results obtained from this study were as follows: 1. Benzene is a well-known carcinogen, it's median concentrations were 0.00024∼0.02057ppm at suburban area and 0.002∼00.654ppm at work place, These benzene concentrations were not exceed the OSHA(Occupational Safety and Health Administration) threshold benzene level of 1ppm in the states. 2. Metabolites product of benzene(t,t-Muconic Acid) and toluene(Hippuric Acid) were not significant both in suburban and workplace area. The median concentration of t,t-MA and HA were 0.0122, 1.44277g/g creatinine, respectively. 3. In the case of individual susceptibility markers as CYPlAl, 41.8% of them has homozygous wild type(W) and who has heterozygous variant type(H) was 35.4% and 22.8% of homozygous variant type(M) genetic type. In the case of CYP2E1, 62.82% of them has homozygous wild type(D) type, 34.62% of each has heterozygous variant type (DC) and 2.56% of them has homozygous variant type (CC). Who doesn't have GSTM1 gene was 46.25% and who has GSTM1 gene was 53.75%. Who doesn't have GSTT1 gene was 40.0% in study groups and who has GSTT1 gene was 60.0%. Who has W genetic type, which is homozygous wild type of GSTP1, was 69.18% and H genetic type, which is heterozygous variant type was 28.4%. M genetic type which is homozygous variant type was 2.4%. 4. Concentration differences of metabolites such as t,t-MA and HA in urine, which is generated by individual susceptibility marker of GSTM1, GSTT1, GSTP1 gene of Phase I and CYP1A1, CYP2E1 gene of Phase II, was examined. As a result, GSTP1 and GSTM1 indicate slight differences depend on the amount of metabolites in urine, it was not statistically significant.

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Genetic diversity in kiwifruit germplasm evaluated using RAPD and SRAP markers (RAPD와 SRAP 마커를 이용한 참다래 유전자원의 유전적 다양성)

  • Cho, Kang Hee;Kwack, Yong-Bum;Park, Seo Jun;Kim, Se Hee;Lee, Han Chan;Kim, Mi Young
    • Journal of Plant Biotechnology
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    • v.44 no.3
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    • pp.303-311
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    • 2017
  • In this study, random amplified polymorphic DNA (RAPD) and sequence-related amplified polymorphism (SRAP) analyses were used for evaluation of genetic diversity of 61 kiwifruit (Actinidia spp.) germplasms including domestic and overseas collection cultivars. Forty RAPD primers were detected in a total of 230 polymorphic bands with an average of 5.75. Thirty-two SRAP primer combinations were detected in a total of 204 polymorphic bands with an average 6.38. By unweighted pair-group method arithmetic average cluster analysis using 434 polymorphic bands, kiwifruit germplasms were classified in three groups with similarity value of 0.680. Cluster I consisted of 46 kiwifruit germplasms belonging to A. deliciosa, A. chinensis, A. deliciosa ${\times}$ A. arguta, A. chinensis ${\times}$ A. arguta, and A. chinensis ${\times}$ A. deliciosa. Cluster II consisted of seven germplasms belonging to A. arguta and 'Skinny Green', a cultivar derived from a cross between A. arguta and A. deliciosa. Cluster III consisted of seven germplasms belonging to A. rufa, A. hemsleyana, A. macrosperma, A. polygama, and A. eriantha. Genetic similarity values among tested kiwifruit germplasms ranged from 0.479-0.991, and average similarity value was 0.717. Similarity value was highest (0.991) between NHK0038 (A. deliciosa) and NHK0040 (A. deliciosa), and lowest (0.479) between 'Hayward' (A. deliciosa) and K5-1-22 (A. arguta).

Evaluation of Effective Breeders Number (Ne) for Stock Enhancement in Olive Flounder Paralichthys olivaceus Using Microsatellite DNA Markers (Microsatellite DNA marker를 이용한 넙치, Paralichthys olivaceus 방류종묘의 유효어미수 평가)

  • Jeong Dal-Sang;Kim Kwang-Soo;Kim Kyung-Kil
    • Journal of Aquaculture
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    • v.19 no.3
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    • pp.205-209
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    • 2006
  • Genetic change from broodstock to hatchery stock of the olive flounder Paralichthys olivaceus and effective number of breeders (Ne) were investigated by the different fertilized-egg collecting methods; E1 (eggs collected one day after spawning) and E2 (eggs collected two days after spawning) using seven microsatellite loci (Kop2, Kop22, Kop18, Kop3, Kop21, Kop9 and Kop26) for the better understanding of stock enhancement. Observed heterozygosity in three stocks ranged from 0.651 at Kop3 to 0.928 at Kop22, with offspring being slightly higher heterozygous over their parents. However, the genetic reduction of offspring was significant. The offspring allele number per locus was reduced to 23.5% for E1 and 17.6% for E2 of their maternal number. Ne to the hatchery stock was estimated to be 21.9 for E1 and 34.3 for E2. The inbreeding coefficients of populations El and E2 were 0.023 and 0.015, respectively. The present study suggests the extension of the egg collection period for a recovery of the genetic diversity in artificially produced offspring.

Structural Design Optimization of Lightweight Offshore Helidecks Using a Genetic Algorithm and AISC Standard Sections (유전 알고리듬 및 AISC 표준 단면을 사용한 경량화 헬리데크 구조 최적설계)

  • Sim, Kichan;Kim, Byungmo;Kim, Chanyeong;Ha, Seung-Hyun
    • Journal of the Computational Structural Engineering Institute of Korea
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    • v.32 no.6
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    • pp.383-390
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    • 2019
  • A helideck is one of the essential structures in offshore platforms for the transportation of goods and operating personnel between land and offshore sites. As such, it should be carefully designed and installed for the safety of the offshore platform. In this study, a structural design optimization method for a lightweight offshore helideck is developed based on a genetic algorithm and an attainable design set concept. A helideck consists of several types of structural members such as plates, girders, stiffeners, trusses, and support elements, and the dimensions of these members are typically pre-defined by manufacturers. Therefore, design sets are defined by collecting the standard section data for these members from the American Institute of Steel Construction (AISC), and integer section labels are assigned as design variables in the genetic algorithm. The objective is to minimize the total weight of the offshore helideck while satisfying the maximum allowable stress criterion under various loading conditions including self-weight, wind direction, landing position, and landing condition. In addition, the unity check process is also utilized for additional verification of structural safety against buckling failure of the helideck.

Evaluation of Biohydrogen Production Using Various Inoculum Sources (다양한 접종원을 이용한 바이오수소 생산 평가)

  • Geumhee, Kim;Jiho, Lee;Hyoju, Yang;Yun-Yeong, Lee;Yoonyong, Yang;Sungho, Choi;Moonsuk, Hur;Byounghee, Lee;Kyung-Suk, Cho
    • Microbiology and Biotechnology Letters
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    • v.50 no.4
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    • pp.557-562
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    • 2022
  • In this study we evaluated biohydrogen production potential as operational parameters (substrate, salt concentration, and temperature) using eight inoculum sources. While the volumetric biohydrogen production rate was significantly affected by temperature and inoculum sources, substrate and salt concentration did not have a significant effect on the biohydrogen production. Mesophilic temperature (37℃) was also found more appropriate for the hydrogen production than thermophilic temperature (50℃). Rate, while the eight inoculum sources, anaerobic digestion sludge exhibited the fastest biohydrogen production. The maximum production rate from anaerobic digestion sludge was 2,729 and 1,385 ml-H2·l-1·d-1 at mesophilic and thermophilic temperature, respectively.

Elevator Algorithm Design Using Time Table Data (시간표 데이터를 이용한 엘리베이터 알고리즘 설계)

  • Park, Jun-hyuk;Kyoung, Min-jun
    • Proceedings of the Korean Institute of Information and Commucation Sciences Conference
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    • 2022.05a
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    • pp.122-124
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    • 2022
  • Handling Passenger Traffic is the main challenge for designing an elevator group-control algorithm. Advanced control systems such as Hyundai's Destination Selection System(DSS) lets passengers select the destination by pressing on a selecting screen, and the systems have shown great efficiency. However, the algorithm cannot be applied to the general elevator control system due to the expensive cost of the technology. Often many elevator systems use Nearest Car(NC) algorithms based on the SCAN algorithm, which results in time efficiency problems. In this paper, we designed an elevator group-control algorithm for specific buildings that have approximate timetable data for most of the passengers in the building. In that way, it is possible to predict the destination and the location of passenger calls. The algorithm consists of two parts; the waiting function and the assignment function. They evaluate elevators' actions with respect to the calls and the overall situation. 10 different timetables are created in reference to a real timetable following midday traffic and interfloor traffic. The specific coefficients in the function are set by going through the genetic algorithm process that represents the best algorithm. As result, the average waiting time has shortened by a noticeable amount and the efficiency was close to the known DSS result. Finally, we analyzed the algorithm by evaluating the meaning of each coefficient result from the genetic algorithm.

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A Safety Evaluation of Genetically Modified Feedstuffs for Livestock Production; the Fate of Transgenic DNA and Proteins

  • Beever, D.E.;Glenn, K.;Phipps, R.H.
    • Asian-Australasian Journal of Animal Sciences
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    • v.16 no.5
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    • pp.764-772
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    • 2003
  • Two genetic constructs used to confer improved agronomic characteristics, namely herbicide tolerance (HT) in maize and soyabean and insect resistance (Bt) in maize, are considered in respect of feeding to farm livestock, animal performance and the nutritional value and safety of animal products. A review of nucleic acid (DNA) and protein digestion in farm livestock concludes that the frequency of intact transgenic DNA and proteins of GM and non-GM crops being absorbed is minimal/non existent, although there is some evidence of the presence of short fragments of rubisco DNA of non-GM soya in animal tissues. It has been established that feed processing (especially heat) prior to feeding causes significant disruption of plant DNA. Studies with ruminant and non-ruminant farm livestock offered GM feeds demonstrated that animal performance and product composition are unaffected and that there is no evidence of transgenic DNA or proteins of current GM in the products of animals consuming such feeds. On this evidence, current HT and Bt constructs represent no threat to the health of animals, or humans consuming the products of such animals. However as new GM constructs become available it will be necessary to subject these to rigorous evaluation.

A Study of the Integration of Individual Classification Model in Data Mining for the Credit Evaluation (신용평가를 위한 데이터마이닝 분류모형의 통합모형에 관한 연구)

  • Kim Kap Sik
    • The KIPS Transactions:PartD
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    • v.12D no.2 s.98
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    • pp.211-218
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    • 2005
  • This study presents an integrated data mining model for the credit evaluation of the customers of a capital company. Based on customer information and financing processes in capital market, we derived individual models from multi-layered perceptrons(MLP), multivariate discrimination analysis(MDA), and decision tree. Further, the results from the existing models were compared with the results from the integrated model using genetic algorithm. The integrated model presented by this study turned out to be superior to the existing models. This study contributes not only to verifying the existing individual models but also to overcoming the limitations of the existing approaches.

Diversity Evaluation of Xylella fastidiosa from Infected Olive Trees in Apulia (Southern Italy)

  • Mang, Stefania M.;Frisullo, Salvatore;Elshafie, Hazem S.;Camele, Ippolito
    • The Plant Pathology Journal
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    • v.32 no.2
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    • pp.102-111
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    • 2016
  • Olive culture is very important in the Mediterranean Basin. A severe outbreak of Olive Quick Decline Syndrome (OQDS) caused by Xylella fastidiosa infection was first noticed in 2013 on olive trees in the southern part of Apulia region (Lecce province, southern Italy). Studies were carried out for detection and diversity evaluation of the Apulian strain of Xylella fastidiosa. The presence of the pathogen in olive samples was detected by PCR amplifying the 16S rDNA, gyrase B subunit (gyrB) and HL hypothetical protein genes and single nucleotide polymorphisms (SNPs) assessment was performed to genotype X. fastidiosa. Twelve SNPs were recorded over gyrB and six SNPs were found for HL gene. Less variations were detected on 16S rDNA gene. Only gyrB and HL provided sufficient information for dividing the Apulian X. fastidiosa olive strains into subspecies. Using HL nucleotide sequences was possible to separate X. fastidiosa into subspecies pauca and fastidiosa. Whereas, nucleotide variation present on gyrB gene allowed separation of X. fastidiosa subsp. pauca from the other subspecies multiplex and fastidiosa. The X. fastidiosa strain from Apulia region was included into the subspecies pauca based on three genes phylogenetic analyses.

Disease Occurrence in Transgenic Rice Plant Transformed with Silbene Synthase Gene and Evaluation of Possible Horizontal Gene Transfer to Plant Pathogens

  • Yu, Sang-Mi;Jeong, Ui-Seon;Lee, Ha Kyung;Baek, So Hyeon;Kwon, Soon Jong;Lee, Yong Hoon
    • Research in Plant Disease
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    • v.20 no.3
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    • pp.189-195
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    • 2014
  • Genetic engineering is being used to enhance disease resistance and nutritional value of crops including rice plant. Considering the fast-growing agricultural biotechnology and rapidly increasing global area of transgenic crops, the risk evaluation on environment is necessary. In this study, we surveyed the difference of disease occurrence between transgenic rice variety, Iksan526 transformed with peanut stilbene synthase gene and non-transgenic rice varieties, Dongjin and Nampyeong in the field. Moreover, the possibility of gene transfer from transgenic rice to bacterial and fungal pathogens was investigated. The results of this study indicated that there was no significant difference in the occurrence and severity of the diseases between Iksan526 and Dongjin or Nampyeong. In addition, the results suggested that rice pathogen, such as Xanthomonas oryzae pv. oryzae, Rhizoctonia solani and Magnaporthe grisea did not take up stilbene synthase and bar genes under natural conditions. Moreover the transformed DNA was not transferred to the pathogens even in repetitive contacts.