• Title/Summary/Keyword: Genetic Trend

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Association of Single Nucleotide Polymorphism rs1053004 in Signal Transducer and Activator of Transcription 3 (STAT3) with Susceptibility to Hepatocellular Carcinoma in Thai Patients with Chronic Hepatitis B

  • Chanthra, Nawin;Payungporn, Sunchai;Chuaypen, Natthaya;Pinjaroen, Nutcha;Poovorawan, Yong;Tangkijvanich, Pisit
    • Asian Pacific Journal of Cancer Prevention
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    • v.16 no.12
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    • pp.5069-5073
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    • 2015
  • The single nucleotide polymorphism (SNP) rs1053004 in Signal transducer and activator of transcription 3 (STAT3) was recently reported to be associated with chronic hepatitis B (CHB)-related hepatocellular carcinoma (HCC) in a Chinese cohort. This study was aimed at investigating whether the SNP might also contribute to HCC susceptibility in the Thai population. Study subjects were enrolled and divided into 3 groups including CHB-related HCC (n=211), CHB without HCC (n=233) and healthy controls (n=206). The SNP was genotyped using allelic discrimination assays based on TaqMan real-time PCR. Data analysis revealed that the distribution of different genotypes was in Hardy-Weinberg equilibrium (P>0.05). The frequencies of allele T (major allele) in HCC patients, CHB patients and healthy controls were 51.4%, 58.6% and 61.4%, respectively, whereas the frequencies of C allele (minor allele) were 48.6%, 41.4% and 38.6%. The C allele frequency was higher in HCC when compared with CHB patients (odds ratio (OR)=1.34, 95% confidence interval (CI)=1.02-1.74, P=0.032). The genotype of SNP rs1053004 (CC versus TT+TC) was significantly associated with an increased risk when compared with CHB patients (OR=1.83, 95% CI=1.13-2.99, P=0.015). In addition, we observed a similar trend of association when comparing HCC patients with healthy controls (OR=1.77, 95% CI=1.07-2.93, P=0.025) and all controls (OR=1.81, 95% CI=1.19-2.74, P=0.005). These findings suggest that the SNP rs1053004 in STAT3 might contribute to HCC susceptibility and could be used as a genetic marker for HCC in the Thai population.

Comparison Between Face Color Change and Its Recognition Difference on Asian: Korean, Indonesian and Vietnamian (아시아인의 얼굴색 변화와 인지도간 상관성 비교 : 한국인, 인도네시아인, 베트남인)

  • Jung, Yu Chul;Lee, Meoung Ryul;Kim, Eun Joo;Cho, Jun Cheol;Lee, Hae Kwang
    • Journal of the Society of Cosmetic Scientists of Korea
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    • v.39 no.4
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    • pp.323-327
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    • 2013
  • Various indicators representing skin characteristics such as skin hydration, sebum excretion rate, lightness, and pH are different depending on environmental and genetic factors. However, they are absolute skin indicators and are different from skin characteristics that a person recognizes. Based on this fact, many recent studies have been mainly conducting researches on perspective changes according to changes of absolute skin. This study was proposed not only to find out differences on skin colors of asian by nations, but also to find out whether there was any difference in skin brightness they perceive depending on actual skin color changing. As many as 410 subjects of three Asia nations were participated in this study, and investigated their responses on skin brightness using questionnaire, which was answered their skin color in three different levels. It was also were analyzed how actual skin brightness were changed depending on their perceived skin color changes of subjects. There was a trend showing that the brightness of the actual skin color was increased when participants felt their skin color got brighter regardless of their nationalities. However, there were some differences in color between perceived color and actual color. In addition, there was a different aspect by nations in changes of skin redness and skin yellowness. In conclusion, it was revealed that factors which help people to perceive their own skin brightness were not based on absolute skin brightness, but on different criteria depending on where they are from.

Molecular Typing of Salmonella enterica serovar Typhi Strains Isolated in Busan by Pulsed-Field Gel Electrophoresis (부산지역에서 분리된 Salmonella enterica serovar Typhi균에 대한 PFGE를 이용한 Molecular typing)

  • Min, Sang-Kee;Lee, Ju-Hyun;Park, Eun-Hee;Kim, Jung-Ah;Kim, Kyu-Won
    • Journal of Life Science
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    • v.16 no.4
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    • pp.664-671
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    • 2006
  • We obtained 424 Salmonella enterica serovar Typhi isolates from sporadic cases of infection in Busan during 1996 to 2005. We investigated the trend of antimicrobial resistance and molecular typing by pulsed-field gel electrophoresis (PFGE). Of the total 424 isolates, 6 strains (1.4%) were multidrug-resistant (MDR) S. enterica serovar Typhi isolates, 2 strains (0.5%) were resistant to only nalidixic acid, and the remaining 416 strains (98.1%) were fully susceptible to the 18 antimicrobial agent. PFGE of XbaI-digested chromosomal DNA was performed on 50 sporadic S. enterica serovar Typhi isolates with the objective of investigating the extent of genetic diversity of these isolates in our region. We could find that these isolates were much more heterogeneous and at least 32 different PFGE patterns were generated according by dice coefficient, between 0.69 and 1.0. Restriction fragment patterns consisted of 13 to 18 fragments ranged in size from 20 to 630 kb. The results confirmed that PFGE would be an useful tool for investigating surveillance of sporadic or outbreak case and assessing clonality for S. enterica serovar Typhi in Busan area. Our finding will be valuable in developing rational strategies to control this pathogen and setting the basis of an effective PulseNet system in Korea.

Mineralogy, Geochemistry, and Evolution of the Mn-Fe Phosphate Minerals within the Pegmatite in Cheolwon, Gyeonggi Massif (경기육괴 철원지역 페그마타이트 내 망간-철 인산염광물의 광물-지화학적 특징 및 진화과정)

  • Kim, Gyoo Bo;Choi, Seon Gyu;Seo, Jieun;Kim, Chang Seong;Kim, Jiwon;Koo, Minho
    • Economic and Environmental Geology
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    • v.50 no.3
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    • pp.181-193
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    • 2017
  • Mn-Fe phosphate mineral complexes included within the pegmatite are observed at Jurassic Cheolwon two-mica granite in Gyeonggi Massif, South Korea. The genetic evolution between the Cheolwon two-mica granite and pegmatite, and various trend of Mn-Fe phosphate minerals is made by later magmatic, hydrothermal, and weathering process based on mineralogical, geochemical analysis. The Cheolwon two-mica granite is identified as S-type granite, considering its chemical composition (metaluminous ~ peraluminous), post-collisional environment, low magnetic susceptibility, and existence of biotite and muscovite. The K-Ar age (ca. 153 Ma) of pegmatite is well coincident with age of the Cheolwon two-mica granite ($151{\pm}4Ma$). It indicates that these two rocks are originated from the same magma. Pegmatite indicates the LCT geochemical signature, and was classified as muscovite-rare element class / Li subclass / beryl type / beryl-columbite-phosphate subtype pegmatite. The triplite $\{(Fe^{2+}{_{0.4}},Mn_{1.6})(PO_4)(F_{0.9})\}$ is dominant phosphates in later magmatic stage which partly altered to leucophosphite $\{KFe^{3+}{_2}(PO_4)_2OH{\cdot}2H_2O\}$ and jahnsite $\{(Fe^{3+}{_{0.7}},Mn_{2.3})(PO_4)_2OH{\cdot}4H_2O\}$ by hydrothermal alteration. In particular, near fractures, the triplite has been separatelty replaced by the phosphosiderite ($Fe^{3+}PO_4{\cdot}2H_2O$) and Mn-oxide minerals during weathering stage.

Scab Resistance of Some Pear Genetic Resources and Inter Specific Hybrid Seedlings in Field Condition (포장조건에서 주요 배 유전자원과 종간교배 집단의 검은별무늬병 저항성)

  • Kim, Yoon-Kyeong;Jeong, Hae-Won;Won, Kyung-Ho;Kang, Sam-Seok;Lee, Ug-Yong;Han, Tae-Ho
    • Korean Journal of Plant Resources
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    • v.32 no.4
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    • pp.296-302
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    • 2019
  • This study was accomplished to select breeding materials among the pear germplasm 6 species 43 accessions and check out the expression of scab incidence of inter specific hybrids of 5 crosses 609 seedlings for scab resistance breeding. Fruitlets scab incidence of P. pyrifolia, P. bretschneideri and P. ussuriensis were 59.5, 73.4 and 63.0% respectively, and also fruitlets scab incidence of interspecific hybrid cultivars between P. pyrifolia and P. bretschneideri were 77.7%. However, fruitlets scab incidence of P. communis and interspecific hybrid accessions between P. pyrifolia and P. communis were significantly less than 15%. As a result of the Duncan test, scab resistance of pear accessions were classified into two groups: P. communis and their hybrid were resistance and P. bretschneideri, P. pyrifolia, P. ussuriensis, and among their hybrid were susceptible. Also, it showed the same trend in the seedlings. Scab incidence of 'Seolwon' ${\times}$ 'Chuwhangbae' and 'Supergold' ${\times}$ 'Mantienhong' in P. pyrifolia seedlings showed more than 80%, while that of interspecific hybrid between P. pyrifolia and P. communis showed about 2%. It showed scab resistance of P. communis transferred to hybrid seedlings and expressed to be dominant in their seedlings. Namely, P. communis was good breeding materials for scab resistance.

Characteristics of Nd Isotopic Compositions of the Phanerozoic Granitoids of Korea and Their Genetic Significance (한국 현생 화강암류의 Nd 동위원소 조성 특성과 성인적 의미)

  • Park, Kye-Hun;Lee, Tae-Ho
    • The Journal of the Petrological Society of Korea
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    • v.23 no.3
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    • pp.279-292
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    • 2014
  • Nd isotopic compositions analyzed from the Phanerozoic granitoids of Korea are integrated and discussed. Variations in Nd isotopic compositions can be explained either by temporal trend or by regional differences. Among the three active periods, first two periods during the Permian-Triassic and Jurassic seem to show variations from rather high ${\varepsilon}_{Nd}(t)$ values at the beginning to lower ${\varepsilon}_{Nd}(t)$ values during the later stages. Such trends probably reflect melting of the subducting oceanic crust and producing magma with higher proportion of depleted mantle derived materials during the early stage of subduction process, and subsequent magmas with greater proportion of old continental crust with progress of subduction. However, the Cretaceous-Paleogene period of active magmatism displays higher ${\varepsilon}_{Nd}(t)$ values during the advanced stage of the igneous activities, which is opposite to the previous active periods. The other explanation is that such differences in ${\varepsilon}_{Nd}(t)$ reflect regional differences, based on the observations that such high-${\varepsilon}_{Nd}(t)$ granitoids distribute in the northeastern Gyeongbuk Province and Gyeongsang Basin. If this is the case, the regions with highr ${\varepsilon}_{Nd}(t)$ values may have distinct crustal evolution histories, e.g. younger average age. The choice between the two hypothesis could be made through further studies.

About Streptococcosis of Cultured Olive Flounder, Paralichthys olivaceus in South Korea (국내 양식 넙치에서 발생하는 연쇄구균병에 관하여)

  • Lee, Nam-Sil;Min, Eunyoung;Kim, Kwang Il;Choi, Hye Sung;Jung, Sung-hee;Cho, Miyoung
    • Journal of Marine Life Science
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    • v.5 no.1
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    • pp.1-8
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    • 2020
  • This review is about current Streptococcosis of cultured olive flounder, Paralichthys olivaceus, in South Korea. The main bacterial species are Streptococcus iniae, S. parauberis and Lactococcus garvieae. The occurrence trend has been arranged with published data and seed bank (NIFS) data that was examined with deposited strains and the number from 2002 to 2017. S. iniae and L. garvieae were collected until 2012 and 2002, respectively, but not collected any more after that year. In recent years, the dominant strain of Streptococcosis of cultured olive flounder is S. parauberis. The phenotypic and genetic characteristics of standard strains and isolated strains were examined with published paper. Notably, we describe about distinguishing gross signs and histological signs of 3 types of Streptococcosis in this report. White turbidity of eye, hemorrhage, enteritis and ascites are main signs of S. iniae infection. Darkness of body surface, hemorrhage in somatic muscle and pericarditis are predominant in occasion S. parauberis infection. In occasion of L. garvieae infection, common signs of Streptococcosis are revealed, but these are weak tendency compared with the previous two cases.

Changes of Milling Quality of Rice Varieties According to the Transplanting Time and Good Resources with High Milling Quality in Yeongnam Plain Paddy (영남평야지에서 벼 이앙시기에 따른 도정특성 변화와 도정특성 유망 유전자원 탐색)

  • Kim, Choon-Song;Lee, Jong-Hee;Kwak, Do-Yeon;Jeon, Myeong-Gi;Kang, Jong-Rae;Yeo, Un-Sang;Shin, Mun-Sik;Oh, Byeong-Geun
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.53 no.spc
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    • pp.1-8
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    • 2008
  • We carried out this study to analyze changes of rice grain milling properties according to the transplanting time and to identify genetic resources suitable for improving milling quality of rice in paddy field of Yeongnam area. We analyzed grain filling and milling quality of 30 rice varieties. In late transplanting (June 20), heading date was delayed for 6 days, compared to normal transplanting(June 5). The grain filling ratio (GFR), perfect kernel ratio of milled rice (PKR), and head rice recovery (HRR) were improved in late transplanting. There was no significant difference in head rice yield of two transplanting time, even though the milled rice yield in late transplanting was significantly smaller than that in normal transplanting because of the reduction of spikelet numbers per panicle. The uniformity of brown rice grain measured by selection sieve norm was improve in late transplanting. There was no significant difference of milling loss ratio between normal and late transplanting but there was a trend for a increase of milling necessary time in late transplanting. Thus, our result suggest that optimum transplanting time is June 10 to 15 to improve grain filling and milling quality and produce high head rice yield in the southern paddy plain of Yeongnam region. We selected promising 9 rice varieties which are Nampyeongbyeo, Ilmibyeo, Chucheongbyeo, Dongjinbyeo, Hopyeongbyeo, Malguemi, Chilbo, Hinohikari, and Cheongmu having high percentage of ripened grain and milling quality as genetic resources to improve milling characteristics of rice varieties. Chucheongbyeo, Dongjinbyeo, and Malguemi showed the highest grain filling ratio and Nampyeongbyeo had the highest perfect kernel ratio. Nampyeongbyeo and Ilmibyeo showed the highest head rice yield with more than 500 kg/10a.

Biological Markers as Predictors of Radiosensitivity in Syngeneic Murine Tumors (동계 마우스 종양의 방사선 감수성 예측인자로서의 생물학적 표지자)

  • Chang Sei-Kyung;Kim Sung-Hee;Shin Hyun-Soo;Seong Jin-Sil
    • Radiation Oncology Journal
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    • v.24 no.2
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    • pp.128-137
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    • 2006
  • Purpose: We investigated whether a relationship exists between tumor control dose 50 ($TCD_{50}$) or tumor growth delay (TGD) and radiation induced apoptosis (RIA) in syngeneic murine tumors. Also we investigated the biological markers that can predict radiosensitivity in murine tumor system through analysis of relationship between $TCD_{50}$, TGD, RIA and constitutive expression levels of the genetic products regulating RIA. Materials and Methods: Syngeneic murine tumors such as ovarian adenocarcinoma, mammary carcinoma, squamous cell carcinoma, fibrosarcoma, hepatocarcinoma were used In this study. C3H/HeJ mice were bred and maintained in our specific pathogen free mouse colony and were $8{\sim}12$ weeks old when used for the experiments. The tumors, growing in the right hind legs of mice, were analyzed for $TCD_{50}$, TGD, and RIA at 8 mm in diameter. The tumors were also analyzed for the constitutive expression levels of $p53,\;p21^{WAF1/CIP1},\;BAX,\;Bcl-2,\;Bcl-X_L,\;Bcl-X_S$, and p34. Correlation analysis was peformed whether the level of RIA were correlated with $TCD_{50}$ or TGD, and the constitutive expression levels of genetic products regulating RIA were correlated with $TCD_{50}$, TGD, RIA. Results: The level of RIA showed a significant positive correlation (R=0.922, p=0.026) with TGD, and showed a trend to correlation (R=-0.848), marginally significant correlation with $TCD_{50}$ (p=0.070). It indicates that tumors that respond to radiation with high percentage of apoptosis were more radiosensitive. The constitutive expression levels of $p21^{WAF1/CIP1}$ and 34 showed a significant correlation either with $TCD_{50}$ (R=0.893, p=0.041 and R=0.904, p=0.035) or with TGD (R=-0.922, p=0.026 and R=-0.890 p=0.043). The tumors with high constitutive expression levels of $p21^{WAF1/CIP1}$ or p34 were less radiosensitive than those with low expression. Conclusion: Radiosensitivity may be predicted with the level of RIA in murine tumors. The constitutive expression levels of $p21^{WAF1/CIP1}$ or p34 can be used as biological markers which predict the radiosensitivity.

Geographic Variation of Seed Characteristics and 1-year-old Seedling Growth of Zelkova serrata (느티나무 종자특성의 지리적 변이와 1년생 유묘의 생장)

  • Kim, In Sik;Lee, Joo Hwan
    • Korean Journal of Agricultural and Forest Meteorology
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    • v.15 no.4
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    • pp.234-244
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    • 2013
  • This study was conducted to determine the factors affecting to seed characteristics and seedling growth of Zelkova serrata. The seeds were collected from sixteen populations of Z. serrata and the seed characteristics (i.e., seed length, width, weight and full seed rate) were measured. We also measured the 1-year-old seedling growth of each population at nursery. All seed characteristics showed significant differences in population level. Seed length and seed width were positively correlated with latitude, longitude, altitude and distance from coast line of sampling site. Seed length and seed width also negatively correlated with annual mean temperature, mean temperature of growing season (Mar.~Oct.). The ratio of seed length/seed width showed inverse trend in case of seed length and seed width. Seed weight/1,000 grains had no correlation with geographic factors but showed negative correlation with annual mean dryness index. Seed weight/L showed negative correlation with latitude and longitude and positive correlation with mean temperature of growing season of sampling site. Full seed rate showed negative correlation with latitude, longitude and annual mean dryness index of sampling site. There were significant differences among populations, among family within population and among individuals within family in seedling growth. Height and diameter of root collar of seedling showed negative correlation with longitude and mean humidity of growing season of sampling site. Height growth of seedlings was not correlated with any seed characteristics but, diameter at root collar showed low negative correlation with seed weight/1,000 grains and seed weight/L. We discussed the implications of the results in view of tree improvement of Z. serrata.