• Title/Summary/Keyword: Cy5

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Impacts of Soil Texture on Microbial Community of Orchard Soils in Gyeongnam Province

  • Kim, Min Keun;Sonn, Yeon-Kyu;Weon, Hang-Yeon;Heo, Jae-Young;Jeong, Jeong-Seok;Choi, Yong-Jo;Lee, Sang-Dae;Shin, Hyun-Yul;Ok, Yong Sik;Lee, Young Han
    • Korean Journal of Soil Science and Fertilizer
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    • v.48 no.2
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    • pp.81-86
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    • 2015
  • Soil management for orchard depends on the effects of soil microbial activities. The present study evaluated the soil microbial community of 25 orchard (5 sites for sandy loam, 7 sites for silt loam, and 13 sites for loam) in Gyeongnam Province by fatty acid methyl ester (FAME) method. The average values for 25 orchard soil samples were $270nmol\;g^{-1}$ of total FAMEs, $72nmol\;g^{-1}$ of total bacteria, $34nmol\;g^{-1}$ of Gram-negative bacteria, $34nmol\;g^{-1}$ of Gram-positive bacteria, $6nmol\;g^{-1}$ of actinomycetes, $49nmol\;g^{-1}$ of fungi, and $7nmol\;g^{-1}$ of arbuscular mycorrhizal fungi. In addition, silt loam soils had significantly low ratio of cy17:0 to $16:1{\omega}7c$ and cy19:0 to $18:1{\omega}7c$ compared with those of loam soils (p < 0.05), indicating that microbial activity increased. The average soil microbial communities in the orchard soils were 26.7% of bacteria, 17.9% of fungi, 12.6% of Gram-negative bacteria, 12.5% of Gram-positive bacteria, 2.5% of arbuscular mycorrhizal fungi, and 2.2% of actinomycetes. The soil microbial community of Gram-negative bacteria in silt loam soils was significantly higher than those of sandy loam and loam soils (p < 0.05).

Detection of Fish Rhabdoviruses using a Diagnostic Fish Rhabdovirus DNA Chip

  • Kim, Young-Ju;Lee, Myung-Suk
    • Fisheries and Aquatic Sciences
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    • v.8 no.3
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    • pp.185-187
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    • 2005
  • We tested the in vivo ability of a DNA chip to detect virus-specific genes from virus-infected olive flounder Paralichthys olivaceus and rainbow trout Oncorhynchus mykiss. Target cDNA was obtained from total RNA of virus infected cell lines by reverse transcription (RT) and was labeled with fluorescent dye (Cy5-dUTP). The results show the successful detection of infectious hematopoietic necrosis virus (IHNV) and viral hemorrhagic septicaemia virus (VHSV) genes in the virus-infected fishes.

Improving spaCy dependency annotation and PoS tagging web service using independent NER services

  • Colic, Nico;Rinaldi, Fabio
    • Genomics & Informatics
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    • v.17 no.2
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    • pp.21.1-21.6
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    • 2019
  • Dependency parsing is often used as a component in many text analysis pipelines. However, performance, especially in specialized domains, suffers from the presence of complex terminology. Our hypothesis is that including named entity annotations can improve the speed and quality of dependency parses. As part of BLAH5, we built a web service delivering improved dependency parses by taking into account named entity annotations obtained by third party services. Our evaluation shows improved results and better speed.

Synthesis and Structure-activity Relationship of Cytotoxic $5,2^I,5^I$-Trihydroxy-7,8-dimethoxyflavanone Analogues

  • Min, Byung-Sun;Ahn, Byung-Zun;Bae, Ki-Hwan
    • Archives of Pharmacal Research
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    • v.19 no.6
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    • pp.543-550
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    • 1996
  • Analogues of $2(S)-5, 2^{l}, 5^{l}$-trihydroxy-7, 8-dimethoxyflavanone, a naturally-occurring compound, which had been reported to have potent antitumor activity, were synthesized and examined for the cytotoxicity against three cancer cell lines. Among the intermediate chalcones and synthetic 5-hydroxy-7, 8-dimethoxyflavanone analogues, $({\pm})2^{l}, 5^{l}-dibenzyloxy-5, 7, 8-trimethoxyflavanone$ exhibited about 2-8 times stronger activity than $2(S)-5, 2^{l}, 5^{l}$-trihydroxy-7, 8-dimethoxyflavanone against L1210, K562 and A549 cancer cell lines. In the structure-activity relationship, it is suggested that among analogues of 5-hydroxy-7, 8-dimethoxyflavanone, the existence of two oxygenated groups of para-relation at $C-2^{I} and C-5^{I}$ positions on flavanone B-ring, may be necessary to exhibit effective cytotoxic activity.

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Genome-wide Expression Profiling of Piperine and Piper nigrum Linne (호초(胡椒)와 Piperine에 의한 총체적 유전자 발현 비교)

  • Jo, Eun-Young;Jeong, Ji-Cheon
    • Journal of Physiology & Pathology in Korean Medicine
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    • v.24 no.5
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    • pp.831-836
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    • 2010
  • In addition to spice, black pepper (Piper nigrum Linne : PnL) has been used as herbal medicine because of its function in anti-oxidation, anti-inflammation, and anti-carcinogenesis. Recently, it has been reported that piperine, a component of PnL, inhibits adipocyte differentiation by repressing various adipogenic gene expressions. In this study, we determined whether piperine is a major constituent of PnL that confers the anti-adipogenic activity at whole genome level. Differentiation of 3T3-L1 pre-adipocytes was induced in presence of PnL extract or piperine. To compare genes that are regulated by PnL extract or piperine, we performed expression profiling using microarrays (Agilent Mouse 44k 4plex). RNA samples were labeled with Cy3 and Cy5, respectively. Labeled samples were hybridized to the microarrays. Results were filtered and cut off set p<0.05. Genes exhibiting significant differences in expression level were classified into Gene Ontology (GO)-based functional categories (http://www.geneontology.org) and KEGG (http://www.genome.jp/kegg/). Extract of PnL and its component piperine reduced lipid accumulation in 3T3-L1 cells during adipogenesis. Such anti-adipogenic activity appears to result from down-regulation of transcription factor genes involved in adipogenesis, and other genes involved in fatty acid synthesis, transport, triglyceride synthesis, and carbohydrate metabolism. These genome-wide studies lead to conclude that piperine, as a critical component of PnL, plays common role with PnL in anti-adipogenesis.

The Relationship between Microbial Characteristics and Glomalin Concentrations in Paddy Soils of Gyeongnam Province (경남지역 논토양 미생물 특성과 글로말린 함량 상관관계)

  • Lee, Young-Han;Kim, Min-Keun;Ok, Yong Sik
    • Korean Journal of Soil Science and Fertilizer
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    • v.45 no.5
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    • pp.792-797
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    • 2012
  • Glomalin-related soil protein has been suggested as an enhancer for soil stability by promoting the aggregation. In this study, we examined the concentrations of glomalin and characteristics of microbial community in 20 paddy soils sampled from Gyeongnam Province. Total soil glomalin as glomalin-related soil protein (GRSP) had a significant positive correlation with soil organic matter (p<0.01) and soil dehydrogenase activity (p<0.01). The concentration of GRSP significantly correlated to soil microbial biomass carbon (p<0.001) and the total bacterial community (p<0.01) in paddy soils. In addition, the GRSP had a significant positive correlation with gram-negative bacteria community (p<0.05) and ratio of cy19:0 to 18:$1{\omega}7c$ (p<0.05) in paddy soils. In conclusion, the concentration of GRSP could be an indicator of soil health that simplify the inspection steps for sustainable agriculture in paddy soils.

Effects of Red Bean (Vigna angularis) Protein Isolates on Rheological Properties of Microbial Transglutaminase Mediated Pork Myofibrillar Protein Gels as Affected by Fractioning and Preheat Treatment

  • Jang, Ho Sik;Lee, Hong Chul;Chin, Koo Bok
    • Food Science of Animal Resources
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    • v.36 no.5
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    • pp.671-678
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    • 2016
  • Fractioning and/or preheating treatment on the rheological properties of myofibrillar protein (MP) gels induced by microbial transglutaminase (MTG) has been reported that they may improve the functional properties. However, the optimum condition was varied depending on the experimental factors. This study was to evaluate the effect of red bean protein isolate (RBPI) on the rheological properties of MP gels mediated by MTG as affected by modifications (fractioning: 7S-globulin of RBPI and/or preheat treatment (pre-heating; 95℃/30 min): pre-heating RBPI or pre-heating/7S-globulin). Cooking yields (CY, %) of MP gels was increased with RBPI (p<0.05), while 7S-globulin decreased the effect of RBPI (p<0.05); however, preheating treatments did not affect the CY (p>0.05). Gel strength of MP was decreased when RBPI or 7S-globulin added, while preheat treatments compensated for the negative effects of those in MP. This effect was entirely reversed by MTG treatment. Although the major band of RBPI disappeared, the preheated 7S globulin band was remained. In scanning electron microscopic (SEM) technique, the appearance of more cross-linked structures were observed when RBPI was prepared with preheating at 95℃ to improve the protein-protein interaction during gel setting of MP mixtures. Thus, the effects of RBPI and 7S-globulin as a substrate, and water and meat binder for MTG-mediated MP gels were confirmed to improve the rheological properties. However, preheat treatment of RBPI should be optimized.

A Study on the Engineering Properties of Alluvial clay in the Daebul Reclaimed Tideland (대불간척지 충적점토의 공학적 특성에 관한 연구)

  • 김홍일;진병익;유기송
    • Magazine of the Korean Society of Agricultural Engineers
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    • v.26 no.1
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    • pp.29-37
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    • 1984
  • This study was made to find several significant relations among various physical and mechanical properties including cone penetration resistance. The alluvial clay samples were taken at the Daebul Reclaimed Tideland in Samhomyeon, Yeongamgun, Jeonranamdo. The results of the study are summarized as follows; 1.Most samples belong to medium or high plastic, inorganic, silty clay(clay contents;32-64%, silt contents; 36-68%, sand contents; 0-3%). The specific gravities range from 2.70 to 2.73, the unit weights from 1.45 to 1. 75g/cm$^3$, the natural moisture contents from 45 to 77%, the liquid limits from 32 to 56%. It is certain that the foundation is weak because the natural moisture contents are much higher than the liquid limits. 2.It is known from the shear tests that the unconfined compression strenghs vary from 0.09 to 0. 38kg/cm2, the cohesions from 0.05 to 0. 21kg/cm2, the internal friction angles from 0 to 3˚. 3.The consolidation tests show that the initial void ratios range from 1.25 to 2.28, the compression indeices from 0.43 to 0.84, the preconsolidation loads from 0.21 to 0.74kg/cm$^2$. 4.Cone penetration resistances are usually less than 5kg/cm$^2$ from ground surface to the depth of about 8m, and from S to l0kg/cm$^2$ in the layer below about 8m to hard layer. 5.The cohesion and cone penetration resistance are in proportion to the depth of soil layer. 6.The correlations between various physical and mechanical properties including cone penetration resistance for the alluvial clay samples are as follows; a) Wn=0.944C+ l2.733 (r=0.829) b) LL=0. 728Cy+6. 991 (r=0. 873) c) PI=0.659Cy-8.168 (r=0.860) d) rt=0. 0077(272-Wn) =2.092-0. 0077Wn (r=0. 859) e) 60=0. 035wn-0 447 (r=0. 893) f) C=0.380qw+0.031 (r=0.816) g) qu=0.0707qc+0.029 (r=0.810) h) C=0.018Z+0.055 (r=O.802) I) qc=0. 415Z+1, 438 (r=0. 943)

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Effect of the Powder Characteristics of Iron Oxides on the Magnetic Properties of Sr-ferrite (산화철의 분체특성이 Sr-ferrite의 자기특성에 미치는 영향)

  • 조태식;김효준;최승덕;남효덕;염충진
    • Resources Recycling
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    • v.7 no.4
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    • pp.43-49
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    • 1998
  • We investigated the effects of the powder characteristics of various domestic iron oxides (${\alpha}Fe_2O_3$) on the magnetic properties of Sr-ferrites The particle size and the distribution of iron oxides were classified hy three different rerinning methods, and greatly a affected on the magn$\xi$tic prope$\pi$ies and the mmphology of Sr-ferntes. The agglomeration of Ruthner iron oxides and the large particles of Chemirite (CY) above $0.80{\mu}\textrm{m}$ were degraded the prope며es of Sr-fcrrites. The optimal magnetic prope$\pi$ies of Srt territes, showing 68.2 emu/g of saturation magnetization and 4300 Oe of intrinsic coerClvity, were achieved at the following c conditions; Chemirite (P2EP) iron oxides of $0.14{\mu}\textrm{m}$ molar ratio of 5.8. and calcination of $1150^{\circ}C$/1 hr.

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Impacts of Soil Texture on Microbial Community from Paddy Soils in Gyeongnam Province (경남지역 논 토양 토성에 따른 미생물 군집 변화)

  • Lee, Young-Han;Ahn, Byung-Koo;Lee, Seong-Tae;Shin, Min-A;Kim, Eun-Seok;Song, Won-Doo;Sonn, Yeon-Kyu
    • Korean Journal of Soil Science and Fertilizer
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    • v.44 no.6
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    • pp.1176-1180
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    • 2011
  • The present study evaluated the soil microbial communities by fatty acid methyl ester (FAME) method in paddy soils at 11 sites for silt loam, 4 sites for sandy loam, and 5 sites for loam in Gyeongnam Province. The FAME content of fungi in loam ($76nmol\;g^{-1}$) was higher than that of in sandy loam ($45nmol\;g^{-1}$). Sandy loam had significantly lower ratio of cy19:0 to 18:$1{\omega}7c$ compared with that of silt loam (p<0.05), indicating that microbial stress decreased. In addition, actinomycetes community of loam was higher than that of sandy loam.