• Korean Journal of Microbiology
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• v.39 no.3
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• pp.181-186
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• 2003

This study was performed to analyze quantitatively the number of living bacteria in forest soil samples collected from Mt. Keryong using improved direct viable count (DVC) and plate count (PC) methods. The number of living bacteria by DVC comprised 18～44% of the total direct count (TDC), whereas the number of living bacteria by PC was less than 1% of TDC. These results showed that viable but non-culturable (VBNC) bacteria existed in the soil with high percentages. Besides, DVC was proved to make it possible to make a quantitative detection of the VBNC bacteria. On the other hand, upon measuring the value from the conventional nutrient broth (NB) and $10^{-2}$ folded diluted nutrient broth (DNB), the values from the DNB showed 5 to 10 times higher than those from the conventional NB medium. These results indicate that oligotrophic bacterial groups, which could multiply in the low nutrient broth, abundantly exist in the soil ecosystem. It would also be possible to apply this kind of method to other substrate to make a quantitative detection of soil bacterial groups.

• Korean Journal of Soil Science and Fertilizer
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• v.41 no.1
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• pp.9-17
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• 2008

The presence of thiosulfate oxidizing bacteria was examined in rhizosphere soils of 19 economically important plant species belonging to 10 different families. The results showed that the thiosulfate oxidizing bacteria were present in all the tested rhizosphere soils, and the total 32 thiosulfate oxidizing bacteria were recovered. Furthermore, the biochemical characterization revealed that 56% and 44% of the isolates belonged to the obligate chemolithoautotrophs and facultative heterotrophs, respectively. The isolates ATSR15P utilized 19.17 mM of thiosulfate and accumulated 11.65 mM of sulfate in the medium. Concurrently, the decrease in pH of the medium was observed. This study comprehensively demonstrates that the active sulfur oxidation is a ubiquitous phenomenon in the rhizosphere of crop plants in Korea.

• Journal of Life Science
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• v.20 no.10
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• pp.1468-1475
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• 2010

Sulfate reduction rates (SRR) using $^{35}SO_4^{-2}$, sulfide producing rates (SPR) using gas chromatography, the number of sulfate reducing bacteria (SRB) using the most probable number (MPN) method, and soil components (moisture, ammonium, total nitrogen, total organic carbon, total carbon, total inorganic phosphorus, total phosphorus, and sulfate) using standard methods in the organic/conventional rice paddy soils, cleaned/polluted reservoir soils, and cleaned/polluted foreshore soils were studied with the change of seasons. The average SRR was more related to the number of SRB and soil components (especially nitrogen and phosphorus) than sulfate concentration. SRR was also recorded to be highest in October soil samples. However, SPR was higher in foreshore soils containing a high concentration sulfate than in fresh water soils, and it was also recorded to be higher in the polluted areas than in clean areas. From these results, we can conclude that the SRR and SPR of anaerobic environments were affected by the number of SRB, soil components and temperature.

• Microbiology and Biotechnology Letters
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• v.35 no.2
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• pp.150-157
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• 2007

The advanced bioremediation of diesel-contaminated soil through the exploration of bacterial interaction with plants was studied. A diesel-degrading rhizobacterium, Rhodococcus sp.412, and a plant species, Zea mays, having tolerant against diesel was selected. Zea mays was seeded in uncontaminated soil or diesel-contaminated soil with or without Rhodococcus sp. 412. After cultivating for 30 days, the growth of Zea mays in the contaminated soil inoculated with Rhodococcus sp. 412 was better than that in the contaminated soil without the bacterium. The residual diesel concentrations were lowered by seeding Zea mays or inoculating Rhodococctis sp. 412. These results Indicate that the simultaneous use of Zea mays and Rhodococcus sp. 412 can give beneficial effect to the remediation of oil-contaminated soil. Bacterial community was characterized using a 16S rDNA PCR and denaturing gradient gel electrophoresis (DGGE) fingerprinting method. The similarities of DGGE fingerprints were $20.8{\sim}39.9%$ between the uncontaminated soil and diesel contaminated soil. The similarities of DGGE fingerprints were $21.9%{\sim}53.6%$ between the uncontaminated soil samples, and $31.6%{\sim}50.0%$ between the diesel-contaminated soil samples. This results indicated that the structure of bacterial community was significantly influence by diesel contamination.

• Korean Journal of Soil Science and Fertilizer
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• v.35 no.2
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• pp.118-126
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• 2002

To evaluate the correlations of microbial populations with soil healthiness and crop production and establish the criteria for microbial population of soil types. We analyzed the microbial community structure of 13 soils which were different in physical and chemical properties and cultivation methods. According to the analysis of microbial population suing the dilution plate method, the large differences of the microbial population structures among soil types were shown: aerobic bacteria $2-27{\times}10^6$, fluorescent Pseudomonas $1-1,364{\times}10^5$, Gram negative bacteria $1-126{\times}10^4$, and mesophilic Bacillus $1-110{\times}10^5$. The density of Gram negative bacteria was highest on red pepper cultivating soils (sample no. 4 and 6) of Umsung and Gesan, Chungbuk, and the density of the fluorescent Pseudomonas was highest on greenhouse soil (sample no. 7) of Jinju, Kyungnam. The crop productivity of three soils was high as compared with those of other soils. It was supposed that the density of fluorescent Pseudomonas and mesophilic Bacillus were correlated with the incresed crop production. By MIDI analysis, 579 strains isolated from 13 soils composed of a variety of microbes including 102 isolates of Agrobacterium, 112 isolates of Bacillus, 32 isolates of Pseudomonas, 44 isolates of Kocuria, and 34 isolates of Pseudomonas. Among the 624 isolates of Gram negative bacteria, Pseudomonas including P. putida and p. fluorescens occupied the highest density (51%), and Stenotrophomonas maltophilia and Burkholderia cepacia also appeared at high density. From RAPD analysis, the fluorescent Pseudomonas strains isolated from 13 soil types showed a high level of strain diversities and were grouped into 2 - 14 patterns according to soil types. Many of unknown bacteria were recovered from the paddy soil, and needed to be further characterized on the molecular basis.

• Korean Journal of Microbiology
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• v.35 no.1
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• pp.72-77
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• 1999

To investigate soil bacterial diversity according to vegelalioo types, utilizing ability of sole carbon sources and restriction enzyme patterns of 16s rDNA were analyzed. From the both results; five kinds of soil microbial communities were grouped as forest soil (Quercus mongolica and Pinus densi&ra vegetation), grass-agricultured soil and microbial communities of naked soil. But, both soil microbial communities of directily exlracted from ths soil and indirectly extracted from heterotrophic bacteria that cultured soil in LB medium showed very different similarity.

• Korean Journal of Microbiology
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• v.49 no.4
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• pp.328-335
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• 2013

As a result of conducting a cultural experiment of tomato using chicken feather protein hydrolysate (CPH) which was mass produced by keratin protein degrading bacterium Chryseobacterium sp. FBF-7 (KACC 91463P), we found that the stem and the root of tomato showed significant improvement in growth. For the purpose of phylogenic interpretation, a comparison was drawn between the effect of CPH, a treated CPH and untreated, on the changes of bacterial populations by 454 pyrosequencing based on 16S rRNA gene sequences. Tomato rhizosphere soil untreated with CPH (NCPH) showed 6.54 Shannon index from 3,281 sequence reads, and the rhizosphere soil treated with CPH (TCPH) showed 6.33 Shannon index from 2,167 sequence reads, displaying that it does not affect the diversity. Bacterial populations were composed of 19 phyla in the rhizosphere soil, and the phylum Proteobacteria occupied 40% of total bacterial populations. Bradyrhizobium, Agromonas, Nitrobacter, and Afipia (BANA group) which belong to Bradyrhizobiaceae were abundant and commonly detected in both the treated and untreated soils, suggesting the dominance of bacterial group in rhizosphere soil. The results obtained showed that CPH treatment does not affect the indigenous bacterial populations present in the rhizosphere soil.

• Korean Journal of Soil Science and Fertilizer
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• v.31 no.2
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• pp.204-210
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• 1998

The experiment was conducted to obtain the basic data required to characterize and improve rhizosphere environment of salt-accumulated greenhouse(SAG) soils by comparing the soil properties and the microbial flora of such soils to those of unprotected arable upland(UAU) soils. Soils were sampled from greenhouses and unprotected upland fields around the country. Microbial propulation, biomass C content and soil chemical properties were of interest. Population density of fluorescent Pseudomonas was high in UAU soils, while those of pathogenic Fusarium sp. and fluorescent Pseudomonas were low in SAG soils. With increasing soil organic matter(OM) content, the population densities of Bacillus sp., fluorescent Pseudomonas sp., Enterobacteriaceae, and microbial biomass C content increased. As soil electrical conductivity(EC) increased higher than $5.1dS\;m^{-1}$, the ratios of bacteria to fungi(B/F) and actinomycetes to fungi(A/F) and the population density of fluorescent Pseudomonas decreased remarkably. The soil pH was positively related to the population density of aerobic bacteria, while it was negatively related to that of fungi. The soil OM content was significantly correlated to the population densities of actinomycetes($r=0.226^*$). Bacillus sp.($r=0.334^{**}$), Enterobacteriaceae($r=0.276^*$), and the microbial biomass C content($R=0.439^{**}$). The population density of actinomycetes was also significantly correlated with soil exchangeable Ca($r=0.334^{**}$) and Mg($r=0.352^{**}$).

• Microbiology and Biotechnology Letters
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• v.38 no.3
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• pp.329-334
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• 2010

In this study, the rhizoremediation of petroleum and heavy metal-contaminated soil was characterized employing Zea mays and two plant-growth promoting rhizobacteria, Gordonia sp. S2RP-17 and Serratia sp. SY5 which have petroleum-degrading activity and heavy metal-resistance, respectively. After 51 days, the average dry weights of Zea mays' root without and with the inoculation of rhizobacteria were $1.9{\pm}0.2$ and $5.6{\pm}0.7\;g$, respectively. Compared with initial TPH concentration in soil ($21,576{\pm}3,426\;mg-TPH{\cdot}kg-dry\;soil^{-1}$), the residual TPH concentrations were $220{\pm}98\;mg-TPH{\cdot}kg-dry\;soil^{-1}$ in soil planted with Zea mays, and $20{\pm}41\;mg-TPH{\cdot}kg-dry\;soil^{-1}$ in soil planted with Zea mays and inoculated with rhizobacteria. These results indicated that the inoculation of S2RP-17 and SY5 could promote TPH removability in soil as well as the growth of Zea mays' root. There was little positive effect of the rhizobacteria inoculation on the removability of heavy metal such as Cu, Cd and Pb in soil planted with Zea mays.

• Research in Plant Disease
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• v.17 no.2
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• pp.121-128
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• 2011

Bacteriolytic myxobacteria have been known to secrete various antifungal metabolites against several soilborne phytopathogens including Phytophthora. Among the three isolates of Myxococcus spp., KYC 1126 and KYC 1136 perfectly inhibited the mycelial growth of Phytophtora capsici in vitro. In order to show the biocontrol activity on Phytophthora blight of hot pepper, we tried to find the best way of application of a myxobacterial isolate. Although KYC 1126 fruiting body was easily grown on the colony of Escherichia coli as a nutrient source, it did not control the disease when it was pre-applied in soil. Before the bioassay of a liquid culture filtrate of KYC 1126 was conducted, its antifungal activity was confirmed on the seedlings applying with the mixture of the pathogen's zoospore suspension and KYC 1126 filtrate. On greenhouse experiments with five and four replications, the control value of KYC 1126 on phyllosphere and rhizosphere was 88% and 36%, respectively. Whereas, the control value of dimetnomorph+propineb on phyllosphere was 100% and that of propamorcarb on rhizosphere was 44%. There was a phytotoxicity of the myxobacterial filtrate when seedlings were washed and soaked for 24 hours. Gummy materials were covered with roots. And stem and petiole were constricted, then a whole seedling was eventually blighted.