• The Korean Journal of Mycology
• /
• v.51 no.1
• /
• pp.51-56
• /
• 2023

Dendropanax trifidus belonging to the family Araliaceae, is a warm-temperate evergreen tree distributed in Jeju Island, Bogil Island, Geomun Island, Geoje Island, Wando, and Haenam in Korea. In June 2021, a root rot disease in which branches of Dendropanax trifidus seedlings turned brown and shrunk was discovered at the seedling cultivation facility in Naju-si, Republic of Korea. To identify the root rot fungus, three strains were isolated from the diseased tissues of seedlings and their mycological characteristics were investigated on potato dextrose agar. In addition, a molecular phylogenetic analysis was performed using sequences of the internal transcribed spacer (ITS) region and translation elongation factor 1-α (EF1-α) gene. The fungus was identified as Fusarium oxysporum. For pathogenicity test, the roots of seedlings were immersed in the conidia suspension of the strains and planted. After 20 days inoculation, root rot and browning symptoms were confirmed in the inoculated plants. This is the first report of F. oxysporum on D. trifidus in Korea.

• Journal of Plant Biotechnology
• /
• v.44 no.2
• /
• pp.135-141
• /
• 2017

Cudrania tricuspidata Bureau is a widely used medicinal perennial woody plant. For conservation and germplasm utilization of the plant, it is imperative to obtaining information regarding the genetic diversity of the plant populations. Although C. tricuspidata is an important medicinal plant registered in South Korea, no molecular markers are currently available to distinguish Korean-specific ecotypes from other ecotypes of different countries. In this study, we developed single nucleotide polymorphism (SNP) markers derived from chloroplast genomic sequences to identify distinct Korean-specific ecotypes of C. tricuspidata via the amplification refractory mutation system (ARMS)-PCR analyses. Molecular authentication of twelve C. tricuspidata ecotypes from different regions was performed, using DNA sequences in the trnL-F chloroplast intergenic region. The SNP markers developed in this study are useful for rapidly identifying specific C. tricuspidata ecotypes from different regions.

• Korean Journal of Plant Taxonomy
• /
• v.44 no.3
• /
• pp.202-207
• /
• 2014

Lonicera insularis Nakai (Caprifoliaceae) is Korean endemic plant that lives along the shore of Ulleungdo and Dokdo. The aim of this study is to construct a phylogenetic relationship within six species (L.maackii, L.chrysantha, L.subsessilis, L. harai, L. morrowii) of genus Lonicera L. and Wigela subsessilis as outgroup and intraspecific variation of L. insularis using chloroplast DNA five regions sequences. Sequence analysis revealed that both L. insularis and L. morrowii showed complete homologies in the intergenic regions of trnL-trnF, trnS-trnG, psbM-trnD and matK coding region. However, sequence in the petN-psbM intergenic region showed a single nucleotide difference between both species, thus we designated them as CP01 and CP02. The plants having CP01 are prevalent in the Ulleungdo and Dokdo, while L. insularis and L. morrowii from Ulleungdo and of Dokdo, and Japan have CP02. This confirmed the existence of two cp DNA lineages with different geographical distributions. We can infer the allopatric speciation by geographical barrier. The result will provide the important basal data to study speciation and specie evolution of ocean islands such as Ulleungdo and Dokdo.

• Journal of Life Science
• /
• v.26 no.11
• /
• pp.1341-1344
• /
• 2016

Dendropanax morbifera is an endemic tree species of Korea, it is restricted to the southern parts of Korea. The internal transcribed spacer (ITS) region of nuclear ribosomal DNA (nrDNA) for Dendropanax morbifera grown at Bogil-do, Korea was determined. We investigated the sequence-based phylogenetic relationships of plants related and clarified its taxonomical position. The determined sequences consisted of 689 residues. ITS1 was 222 bp long while ITS2 was 233 bp long. The 5.8S rDNA was 160 bp long. The ITS region sequences of the Dendropanax species included in this study were obtained from GenBank. Oreopanax polycephalus was used as the outgroup. A pairwise alignment was calculated using the Clustal X program. A phylogenetic tree was constructed by the neighbor-joining method using the Tree view program. Sequence similarities among species including D. morbifera Bogil-do isolate showed the range 92.6 to 99.7% in sequence-based phylogenetic analysis using total 615 base pairs of ITS1, 5.8S rDNA and ITS2. D. morbifera Bogil-do isolate exhibited the highest degree of relatedness to D. chevalieri, sharing 99.7% ITS region similarity. D. morbifera Bogil-do isolate also showed to D. trifidus, sharing 99.4% ITS region similarity.

• The Korean Journal of Mycology
• /
• v.44 no.4
• /
• pp.342-345
• /
• 2016

Chaenomeles sinensis, called as Chinese quince, belongs to the family Rosaceae and is widely distributed in Korea, China, and Japan. A microorganism was isolated from part of a twig of C. sinensis that showed an abnormal appearance. The microorganism was identified as the slime mold Stemonaria longa of the division Myxomycota, which was previously unrecorded in Korea. The present study reports the morphological characteristics of the isolated fungus and a phylogenetic relationship based on the ${\beta}$-tubulin gene sequences.

• Journal of Life Science
• /
• v.21 no.10
• /
• pp.1452-1459
• /
• 2011

Citrus is a common term and genus (Citrus) of flowering plants in the rue family, Rutaceae. Citrus is believed to have originated in the part of Southeast Asia bordered by Northeastern India, Myanmar (Burma) and the Yunnan province of China. The taxonomy and systematics of the genus are complex and the precise number of natural species is unclear, as many of the named species are clonally propagated hybrids, and there is genetic evidence that even some wild, true-breeding species are of a hybrid origin. One of the most popular sequences for phylogenetic inference at the generic and infrageneric levels in plants is the chloroplast trnL-trnF region. We evaluated the seven taxa with the trnL-trnF region to estimate phenotypic relationships within the genera Citrus, Poncirus, and Fortunella in Korea. Alignment of the DNA sequences required the addition of numerous gaps. Sequence variation within Citrus was mostly due to insertion/deletion. Within the genus Citrus, C. lomonia and C. sinensis were relatives and sistered with C. aurantium in the four phylogenetic analyses (MP, ML, ME, and NJ). However, some external nodes were poorly supported.

• Proceedings of the Plant Resources Society of Korea Conference
• /
• 2019.04a
• /
• pp.67-67
• /
• 2019

뽕나무과(Moraceae) 닥나무속(Broussonetia)의 품종에 대한 국내 연구동향으로는 잎의 성상이나 암꽃의 포길이, 엽신의 폭과 같은 수목학 분수학적 관점으로 특징을 파악하기 때문에 구분이 어려운 실정이다. 또한 닥나무(Broussonetia kazinoki Siebold)와 꾸지나무[Broussonetia papyrifera (L.) $L^{\prime}H{\acute{e}}r.$ ex Vent.]의 수목학적 특징이 유사하여 오동정의 사례가 발생하기도 한다. 닥나무의 향명은 다양하게 불리지만 그 분류기준은 명확하지 않다. 본 연구에서는 총 4개 마커(ITS, matK, trnL-F, ndhF)의 염기서열 분석과 분자계통학적 분류를 통해 닥나무와 꾸지나무의 교잡종으로 확인된 전라도지역 닥나무 8개체에 대하여 펄프제지 자원으로써의 특성을 확인하였다. 8개체 인피섬유의 형태학적 특징인 섬유장, 섬유폭, 섬유 내강(Lumen)폭을 통해 Runkel ratio, Slenderness ratio, Flexibility coefficient, Rigidity coefficient를 도출하고 종이의 기계적 강도, 내절도와의 상관관계, 섬유와 섬유간의 결합력 등을 예측하였다. 상기와 같은 연구결과는 유전형질이 동일한 전라도지역 닥나무의 형태학적 특성을 통해 펄프제지 공정에 영향을 미칠 수 있는 인자들을 분석 하였다. 이러한 특성에 따라 다양한 품질의 종이를 제조 할 수 있는 기초 자료로 제공될 것이다.

• Research in Plant Disease
• /
• v.12 no.3
• /
• pp.189-196
• /
• 2006

Crown gall on lower stem of weeping fig(Ficus benjamina Roxb.) was first observed at Daejon in 2003. Tumors were about 15 cm in size and semi-round with rough surface texture of dark brown color. Two virulent isolates among ten bacteria isolated from the tumor tissues were characterized. Their colonies were convex, glistening, circular with an entire edge, and white or tannish cream in color on potato dextrose agar supplemented with 0.5% $CaCO_3$. They were rod shape with peritrichous flagellae, gram-negative, aerobic growth, oxidase-positive, and grew on D1M agar. The isolates were identified as Agrobacterium larrymoorei and A. tumefaciens based on biochemical and physiological characteristics, fatty acid profiles and substrate utilization patterns. Seedlings of some host plants excepting grapevine produced typical galls two to three weeks after inoculation with cell suspensions of the virulent strains. This is the first report on crown gall of weeping fig in Korea.

• Research in Plant Disease
• /
• v.17 no.1
• /
• pp.99-101
• /
• 2011

The ascomycetous fungus Taphrina wiesneri, the pathogen of cherry witches' broom, is highly pathogenic to Prunus yedoensis, the most widely planted cherry trees in Korea as park and roadside trees. A collection of 13 strains of the pathogen in Korea and Japan was characterized by 18S rDNA gene sequence and restriction fragment length polymorphism (RFLP) analysis. In cluster analysis based on 18S rDNA gene sequence the strains were divided into 2 clusters. In RFLP analysis of the rDNA-IGS region using HhaI, the strains were separated into four patterns, B, C, D and G, of which pattern G was new.

• Korean Journal of Plant Taxonomy
• /
• v.35 no.2
• /
• pp.143-151
• /
• 2005

Cytological characteristics of Abeliophyllum distichum (Oleaceae), endemic to Korea, was examined. Somatic chromosome numbers was 2n = 28 which corresponds to diploid based on x=14. Chromosome length was varied continuously from $1.00{\mu}m$ to $2.03{\mu}m$. Karyotype of Abeliophyllum distichum was investigated in this study for the first time. The cytological characteristics including basic chromosome number, continuous variation of chromosome length, diploid and karyotype were similar to those of the genus Forsythia, which indicated the close relationship between Abeliophyllum and Forsythia, and consequently the two genera seemed to be included to same tribe.