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Molecular Cloning of Estrogen Receptor $\alpha$ in the Masu Salmon, Oncorhynchus masou

  • Sohn, Young Chang
    • 한국양식학회지
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    • 제17권1호
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    • pp.62-68
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    • 2004
  • A cDNA encoding the masu salmon, Oncorhynchus masou, estrogen receptor $\alpha$ (msER$\alpha$) was cloned from the pituitary gland by polymerase chain reaction (PCR). This cDNA contains an open reading frame encoding 513 amino acid residues, and the calculated molecular weight of this protein is about 56,430 Dalton. The amino acid sequences of the DNA binding and ligand binding domains of msER$\alpha$ showed high homology to those of other fish species (84-100%). Reverse transcription PCR analysis showed that the mRNA level of msER$\alpha$ in the pituitary was slightly higher in estradiol-17$\beta$(E2) injected masu salmon than that of control fish. To test the biological activity of msER$\alpha$, the cDNA was ligated to a mammalian expression vector and transfected into a gonadotrope-derived cell line, L$\beta$T2, with a reporter plasmid including estrogen responsive element. Expression of the reporter protein, luciferase, was E2 and msER$\alpha$-dependent. The masu salmon ER$\alpha$ is structurally conserved among teleost species and functions as a transcriptional activator in the pituitary cells.

Differential protein expression in avian liver in response to invasion by Salmonella gallinarum

  • Lee, Gang-Deog;Cho, In-Hee;So, Hyun-Kyung;Koo, Yong-bum;Lee, Jun-heon;Choi, Kang-Duk
    • 한국가금학회:학술대회논문집
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    • 한국가금학회 2004년도 제21차 정기총회 및 학술발표회
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    • pp.37-38
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    • 2004
  • 본 연구는 proteomics의 방법을 이용하여 가금의 질병과 관련된 단백질을 찾고자 수행하였다. 가금티푸스에 감염된 재래계와 대조구와의 비교에서 질병과 관련된 후보 단백질이 이 연구를 통하여 찾아졌다. 이 단백질들은 질병을 조절하고 모니터링하는 가금의 질병 단백질 마커로 중요하게 이용이 될 수 있을 것으로 추정된다.

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무선랜 QoS의 성능향상을 위한 최적 파라미터에 관한 연구 (Study of Optimum Parameters for Improving QoS in Wireless LAN)

  • 진현준
    • 전기전자학회논문지
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    • 제17권2호
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    • pp.96-103
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    • 2013
  • IEEE 802.11과 같은 무선 LAN 환경에서 실시간 멀티미디어 통신이 전송 데이터의 많은 부분을 차지하면서 성능 문제와 함께 네트워크의 QoS(Quality of Service)가 중요한 문제로 대두되고 있다. 802.11e MAC(Medium Access Control)은 기존 802.11 MAC의 문제를 해결하기 위해 우선순위 기반의 차별화 서비스를 제공한다. 특히 각 스테이션의 TXOP(Transmission Opportunity)는 한 번에 여러 프레임을 전송할 수 있는 시간을 규정하며 Priority와 함께 네트워크 성능 및 QoS 향상에 중요한 요소가 된다. 따라서 본 논문에서는 스테이션 수의 변화에 따라 네트워크의 최대 성능을 위한 프레임 사이즈와 TXOP, 그리고 Priority 값을 분석하고 최적의 값을 도출한다. 802.11e 표준 파라미터를 사용하여 시뮬레이션을 수행한 결과 Throughput은 스테이션의 수가 5일 때, TXOP Limit의 값이 6.016ms 일 때 가장 좋은 결과를 보였고 공정성은 TXOP Limit의 값이 3.008ms이고 Priority는 우선순위가 가장 높은 CW(Contention Window) 값이 7-15일 때가 아니고 그보다 낮은 CW 15-31일 때 가장 좋은 결과를 나타내었다.

단백체 분석을 위한 일차원 및 이차원 역상크로마토그래피의 비교 (Comparison of 2-D RP-RP MS/MS with 1-D RP MS/MS for Proteomic Analysis)

  • 문평곤;조영은;백문창
    • 약학회지
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    • 제54권5호
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    • pp.377-386
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    • 2010
  • Single-dimensional (1-D) and two-dimensional (2-D) LC methods were utilized to separate peptides from various sources followed by MS/MS analysis. Two-dimensional ultra-high performance liquid chromatography is a useful tool for proteome analysis, providing a greater peak capacity than 1-D LC. The most popular 2-D LC approach used today for proteomic research combines strong cation exchange and reversed-phase LC. We have evaluated an alternative mode for 2-D LC of peptides using 2-D RP-RP nano UPLC Q-TOF Mass Spectrometry, employing reversed-phase columns in both separation dimensions. As control experiments, we identified 129 proteins in 1-D LC and 322 proteins in 2-D LC from E. coli extract peptides. Furthermore, we applied this method to rat primary hepatocyte and a total of 170 proteins were identified from 1-D LC, and 527 proteins were identified from all 2-D LC system. The in-depth protein profiling established by this 2-D LC MS/MS from rat primary hepatocyte could be a very useful reference for future applications in regards to drug induced liver toxicity.

Comprehensive Analysis of Proteomic Differences between Escherichia coli K-12 and B Strains Using Multiplexed Isobaric Tandem Mass Tag (TMT) Labeling

  • Han, Mee-Jung
    • Journal of Microbiology and Biotechnology
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    • 제27권11호
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    • pp.2028-2036
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    • 2017
  • The Escherichia coli K-12 and B strains are among the most frequently used bacterial hosts for scientific research and biotechnological applications. However, omics analyses have revealed that E. coli K-12 and B exhibit notably different genotypic and phenotypic attributes, even though they were derived from the same ancestor. In a previous study, we identified a limited number of proteins from the two strains using two-dimensional gel electrophoresis and tandem mass spectrometry (MS/MS). In this study, an in-depth analysis of the physiological behavior of the E. coli K-12 and B strains at the proteomic level was performed using six-plex isobaric tandem mass tag-based quantitative MS. Additionally, the best lysis buffer for increasing the efficiency of protein extraction was selected from three tested buffers prior to the quantitative proteomic analysis. This study identifies the largest number of proteins in the two E. coli strains reported to date and is the first to show the dynamics of these proteins. Notable differences in proteins associated with key cellular properties, including some metabolic pathways, the biosynthesis and degradation of amino acids, membrane integrity, cellular tolerance, and motility, were found between the two representative strains. Compared with previous studies, these proteomic results provide a more holistic view of the overall state of E. coli cells based on a single proteomic study and reveal significant insights into why the two strains show distinct phenotypes. Additionally, the resulting data provide in-depth information that will help fine-tune processes in the future.

Metabolic Engineering of Escherichia coli for the Biological Synthesis of 7-O-Xylosyl Naringenin

  • Simkhada, Dinesh;Kim, EuiMin;Lee, Hei Chan;Sohng, Jae Kyung
    • Molecules and Cells
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    • 제28권4호
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    • pp.397-401
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    • 2009
  • Flavonoids are a group of polyphenolic compounds that have been recognized as important due to their physiological and pharmacological roles and their health benefits. Glycosylation of flavonoids has a wide range of effects on flavonoid solubility, stability, and bioavailability. We previously generated the E. coli BL21 (DE3) ${\Delta}pgi$ host by deleting the glucose-phosphate isomerase (Pgi) gene in E. coli BL21 (DE3). This host was further engineered for whole-cell biotransformation by integration of galU from E. coli K12, and expression of calS8 (UDP-glucose dehydrogenase) and calS9 (UDP-glucuronic acid decarboxylase) from Micromonospora echinospora spp. calichensis and arGt-4 (7-O-glycosyltransferase) from Arabidopsis thaliana to form E. coli (US89Gt-4), which is expected to produce glycosylated flavonoids. To test the designed system, the engineered host was fed with naringenin as a substrate, and naringenin 7-O-xyloside, a glycosylated naringenin product, was detected. Product was verified by HPLC-LC/MS and ESI-MS/MS analyses. The reconstructed host can be applied for the production of various classes of glycosylated flavonoids.

전응집 및 Fenton 산화공정을 이용한 축산폐수의 난분해성물질 제거특성에 관한 연구 (Degradation Characteristics of Non-biodegradable Matters using Pre-Coagulation and Fenton Oxidation Process in Livestock Wastewater)

  • 조창우;김병용;채수천;김선애;정팔진
    • 한국물환경학회지
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    • 제22권1호
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    • pp.66-73
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    • 2006
  • The purpose of this study was done to evaluate degradation characteristics of non-biodegradable organic matters including aromatic compounds in livestock wastewater using CFZ process. The CFZ process is consisted of coagulation/sedimentation, Fenton oxidation and zeolite adsoption process. degradation charateristics of each treatment water including livestock wastewater were analyzed by UV scanning, FT-IR and GC/MS. After coagulation/sedimentation process as 1st treatment, non-biodegradable matters remained after 1st treatment were removed by using OH radical produced in Fenton oxidation process. As a result of treatment using these processes, NBDCOD removal efficiency was over 90%. Increase of $E_2/E_3$ ratio (absorbance at 250 and 365 nm) in each treatment water means that aromaticity of livestock wastewater decreased. In case of GC/MS, most aromatics or polynuclear aromatics like benzene, phenol and scatol in livestock wastewater almost wasn't detected after oxidation using OH radical.

LC/ESI-MS/MS를 이용한 수질 환경 시료 중 산성의약물질 분석방법 비교 (Determination of acidic pharmaceuticals in aquatic environmental samples by LC/ESI-MS/MS)

  • 심영은;조현우;명승운
    • 분석과학
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    • 제21권3호
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    • pp.191-200
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    • 2008
  • 의약물질(PPCPs)은 수질 환경 시료에서 새로운 오염물질로 대두되고 있다. 본 연구에서는 LC/ESI-MS/MS를 이용하여 환경 수질 시료로부터 7 종(2-퀴노사린카르복시산, 아세틸살리실산, 디클로페낙-소듐, 나프록센, 이부프로펜, 메페남산, 탈니플루메이트)의 산성의약물질을 동시 분석하는 방법을 비교하여 개선하였으며 폐수처리장의 유입수 및 방류수 그리고 연장선상의 하천수의 오염도를 측정하였다. LC/ESI-MS/MS 분석을 위해서 MCX (Mixed Cation eXchange) 카트리지와 HLB (Hydrophilic-Lipophilic Balance) 카트리지를 연결하는 텐뎀 고체상 추출법과 MCX 카트리지만을 사용하는 고체상 추출법을 이용하여 효과적인 시료 정제 및 추출을 수행하였다. 검출한계(LODs)와 방법검출한계(MDLs)는 각각 0.05~1.50 pg/mL, 0.17~4.90 pg/mL 범위를나타내었다. 시료중 1.0 ng/mL 농도(n=3)에서절대회수율은 81.9%~116.3%를 나타내었다. 수질 환경 시료에서 수 pg/mL~ng/mL의 농도로 산성의약물질이 측정되었다.

사용자 모델 형성 에이전트 BGP-MS의 활용 (Application of the User Modeling Agent BGP-MS)

  • 김도완
    • 공학논문집
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    • 제2권1호
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    • pp.83-94
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    • 1997
  • 본 논문은 사용자 모델 형성 에이전트에 대하여 그의 필요성과 기술적인 범주를 기술하고 있으며, 사용자모델형성 에이전트인 BGP-MS1)가 어떻게 지능형 대화모형 시스템2)에서 사용자 모델형성 필요성을 만족시키는지 기술하고, BGP-MS와 지능형 대화모델 사이에 귀결하는 인터페이스를 서술하고 있다. 또한 지능형 대화모델 기술개발 프로젝트의 양상을 간단히 소개하고, 사용자 모델형성이 에이전트의 관점으로부터 사용자 모델 형성 측면과 형성된 사용자 모델이 응용 측면을 논하고 있다.

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CCT-ICP-MS의 대기분진내 미량원소분석에 대한 적용성 (Applicability of CCT-ICP-MS for the Determination of Trace Elements in Airborne Particulate Matters)

  • 임종명;이진홍;서만철
    • 한국대기환경학회지
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    • 제20권3호
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    • pp.397-409
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    • 2004
  • There has been few studies of either domestic or international to apply CCT-ICP-MS for the precise analysis of As and Cr components associated with airborne particulate matter. To date, the use of CCT-ICP-MS is strongly recommended for the accurate analysis of the toxic trace metals; this is because CCT-ICP-MS technique prevents polyatomic spectral interferences involved in the determination of As and/or Cr components. Taking advantage of CCT-ICP-MS technique, the measurements of about 20 metals were undertaken in this study. The standard reference material (NIST SRM 2783) was used for analytical quality control. To improve analytical accuracy and of acid efficiency, we selected nitric acid based on a test of three kinds of acid for microwave digestion method 1 ) nitric acid. 2) nitric acid and hydrogen peroxide. and 3) nitric acid and perchloric acid. When this method was employed, relative errors to SRM values of Al, As, Cr Fe, Mg, Mn, Pb, Sb, V, and Zn fell below 20%, while those or Ca, Si, and Ti were higher than 20%. The overall results of our study show that the concentrations of As and V determined by CCT-ICP-MS were satisfied with the certificated values within a relative error of 20e1c, whereas those determined by ICP-MS were 10 times higher than the certificated values.