1 |
Korolainen, M. A., Nyman, T. A., Nyyssonen, P., Hartikainen, E. S. and Pirttila, T. : Multiplexed proteomic analysis of oxidation and concentrations of cerebrospinal fluid proteins in Alzheimer disease. Clin. Chem. 53, 657 (2007).
DOI
ScienceOn
|
2 |
Beigel, J., Fella, K., Kramer, P. J., Kroeger, M. and Hewitt, P. : Genomics and proteomics analysis of cultured primary rat hepatocytes. Toxicol. In Vitro 22, 171 (2008).
DOI
ScienceOn
|
3 |
Zolotarjova, N., Martosella, J., Nicol, G., Bailey, J., Boyes, B. E. and Barrett, W. C. : Differences among techniques for highabundant protein depletion. Proteomics. 5, 3304 (2005).
DOI
ScienceOn
|
4 |
Peng, J., Elias, J. E., Thoreen, C. C., Licklider, L. J. and Gygi, S. P. : Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for largescale protein analysis: the yeast proteome. J. Proteome. Res. 2, 43 (2003).
DOI
ScienceOn
|
5 |
Weatherly, D. B., Atwood, J. A., 3rd, Minning, T. A., Cavola, C., Tarleton, R. L. and Orlando, R. : A Heuristic method for assigning a false-discovery rate for protein identifications from Mascot database search results. Mol. Cell. Proteomics. 4, 762 (2005).
DOI
ScienceOn
|
6 |
Bargagli, E., Penza, F., Vagaggini, C., Magi, B., Perari, M. G. and Rottoli, P. : Analysis of carbonylated proteins in bronchoalveolar lavage of patients with diffuse lung diseases. Lung. 185, 139 (2007).
DOI
ScienceOn
|
7 |
Gilar, M., Olivova, P., Chakraborty, A. B., Jaworski, A., Geromanos, S. J. and Gebler, J. C. : Comparison of 1-D and 2- D LC MS/MS methods for proteomic analysis of human serum. Electrophoresis 30, 1157 (2009).
DOI
ScienceOn
|
8 |
Omenn, G. S., States, D. J., Adamski, M., Blackwell, T. W., Menon, R., Hermjakob, H., Apweiler, R., Haab, B. B., Simpson, R. J., Eddes, J. S., Kapp, E. A., Moritz, R. L., Chan, D. W., Rai, A. J., Admon, A., Aebersold, R., Eng, J., Hancock, W. S., Hefta, S. A., Meyer, H., Paik, Y. K., Yoo, J. S., Ping, P., Pounds, J., Adkins, J., Qian, X., Wang, R., Wasinger, V., Wu, C. Y., Zhao, X., Zeng, R., Archakov, A., Tsugita, A., Beer, I., Pandey, A., Pisano, M., Andrews, P., Tammen, H., Speicher, D. W. and Hanash, S. M. : Overview of the HUPO plasma proteome project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database. Proteomics. 5, 3226 (2005).
DOI
ScienceOn
|
9 |
Toll, H., Oberacher, H., Swart, R. and Huber, C. G. : Separation, detection, and identification of peptides by ion-pair reversed-phase high-performance liquid chromatographyelectrospray ionization mass spectrometry at high and low pH. J. Chromatogr. A 1079, 274 (2005).
DOI
ScienceOn
|
10 |
Liu, H., Li, G. Finch, J. W., Geromanos, S. J. and Gebler, J. C. : Development of an Automated RP/RP 2D Nano LC/MS Method for Proteomic Analysis. ABRF P57-T (2007).
|
11 |
Masuda, J., Maynard, D. M., Nishimura, M., Ueda, T., Kowalak, J. A. and Markey, S. P. : Fully automated micro- and nanoscale one- or two-dimensional high-performance liquid chromatography system for liquid chromatography-mass spectrometry compatible with non-volatile salts for ion exchange chromatography. J. Chromatogr. A 1063, 57 (2005).
DOI
ScienceOn
|
12 |
Shen, Y., Zhang, R., Moore, R. J., Kim, J., Metz, T. O., Hixson, K. K., Zhao, R., Livesay, E. A., Udseth, H. R. and Smith, R. D. : Automated 20 kpsi RPLC-MS and MS/MS with chromatographic peak capacities of 1000-1500 and capabilities in proteomics and metabolomics. Anal. Chem. 77, 3090 (2005).
DOI
ScienceOn
|
13 |
Echan, L. A., Tang, H. Y., Ali-Khan, N., Lee, K. and Speicher, D. W. : Depletion of multiple high-abundance proteins improves protein profiling capacities of human serum and plasma. Proteomics. 5, 3292 (2005).
DOI
ScienceOn
|
14 |
Gilar, M., Olivova, P., Daly, A. E. and Gebler, J. C. : Twodimensional separation of peptides using RP-RP-HPLC system with different pH in first and second separation dimensions. J. Sep. Sci. 28, 1694 (2005).
DOI
ScienceOn
|
15 |
Adkins, J. N., Monroe, M. E., Auberry, K. J., Shen, Y., Jacobs, J. M., Camp, D. G., 2nd, Vitzthum, F., Rodland, K. D., Zangar, R. C., Smith, R. D. and Pounds, J. G. : A proteomic study of the HUPO Plasma Proteome Project's pilot samples using an accurate mass and time tag strategy. Proteomics. 5, 3454 (2005).
DOI
ScienceOn
|
16 |
Eriksson, J. and Fenyo, D. : Protein identification in complex mixtures. J. Proteome. Res. 4, 387 (2005).
DOI
ScienceOn
|
17 |
Wolters, D. A., Washburn, M. P. and Yates, J. R., 3rd : An automated multidimensional protein identification technology for shotgun proteomics. Anal. Chem. 73, 5683 (2001).
DOI
ScienceOn
|
18 |
Figliomeni, M. L. and Abdel-Rahman, M. S. : Ethanol does not increase the hepatotoxicity of cocaine in primary rat hepatocyte culture. Toxicology 129, 25 (1998).
|
19 |
Washburn, M. P., Wolters, D. and Yates, J. R. 3rd. : Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 19, 242 (2001).
DOI
ScienceOn
|
20 |
Schley, C., Altmeyer, M. O., Swart, R., Muller, R. and Huber, C. G. : Proteome analysis of Myxococcus xanthus by off-line two-dimensional chromatographic separation using monolithic poly-(styrene-divinylbenzene) columns combined with ion-trap tandem mass spectrometry. J. Proteome. Res. 5, 2760 (2006).
DOI
ScienceOn
|
21 |
Han, C. L., Chien, C. W., Chen, W. C., Chen, Y. R., Wu, C. P., Li, H. and Chen, Y. J. : A multiplexed quantitative strategy for membrane proteomics: opportunities for mining therapeutic targets for autosomal dominant polycystic kidney disease. Mol. Cell. Proteomics. 7, 1983 (2008).
DOI
ScienceOn
|
22 |
Nakamura, T., Kuromitsu, J. and Oda, Y. : Evaluation of comprehensive multidimensional separations using reversedphase, reversed-phase liquid chromatography/mass spectrometry for shotgun proteomics. J. Proteome. Res. 7, 1007 (2008).
DOI
ScienceOn
|
23 |
Rowe, C., Goldring, C. E., Kitteringham, N. R., Jenkins, R. E., Lane, B. S., Sanderson, C., Elliott, V., Platt, V., Metcalfe, P. and Park, B. K. : Network analysis of primary hepatocyte dedifferentiation using a shotgun proteomics approach. J. Proteome. Res. 9, 2658 (2010).
DOI
ScienceOn
|
24 |
Dennis, G., Jr., Sherman, B. T., Hosack, D. A., Yang, J., Gao, W., Lane, H. C.and Lempicki, R. A. : DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome. Biol. 4, P3 (2003).
DOI
|
25 |
Dowell, J. A., Frost, D. C., Zhang, J. and Li, L. : Comparison of two-dimensional fractionation techniques for shotgun proteomics. Anal. Chem. 80, 6715 (2008).
DOI
ScienceOn
|