• 제목/요약/키워드: v-domain

검색결과 517건 처리시간 0.026초

Consensus channelome of dinoflagellates revealed by transcriptomic analysis sheds light on their physiology

  • Pozdnyakov, Ilya;Matantseva, Olga;Skarlato, Sergei
    • ALGAE
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    • 제36권4호
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    • pp.315-326
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    • 2021
  • Ion channels are membrane protein complexes mediating passive ion flux across the cell membranes. Every organism has a certain set of ion channels that define its physiology. Dinoflagellates are ecologically important microorganisms characterized by effective physiological adaptability, which backs up their massive proliferations that often result in harmful blooms (red tides). In this study, we used a bioinformatics approach to identify homologs of known ion channels that belong to 36 ion channel families. We demonstrated that the versatility of the dinoflagellate physiology is underpinned by a high diversity of ion channels including homologs of animal and plant proteins, as well as channels unique to protists. The analysis of 27 transcriptomes allowed reconstructing a consensus ion channel repertoire (channelome) of dinoflagellates including the members of 31 ion channel families: inwardly-rectifying potassium channels, two-pore domain potassium channels, voltage-gated potassium channels (Kv), tandem Kv, cyclic nucleotide-binding domain-containing channels (CNBD), tandem CNBD, eukaryotic ionotropic glutamate receptors, large-conductance calcium-activated potassium channels, intermediate/small-conductance calcium-activated potassium channels, eukaryotic single-domain voltage-gated cation channels, transient receptor potential channels, two-pore domain calcium channels, four-domain voltage-gated cation channels, cation and anion Cys-loop receptors, small-conductivity mechanosensitive channels, large-conductivity mechanosensitive channels, voltage-gated proton channels, inositole-1,4,5-trisphosphate receptors, slow anion channels, aluminum-activated malate transporters and quick anion channels, mitochondrial calcium uniporters, voltage-dependent anion channels, vesicular chloride channels, ionotropic purinergic receptors, animal volage-insensitive cation channels, channelrhodopsins, bestrophins, voltage-gated chloride channels H+/Cl- exchangers, plant calcium-permeable mechanosensitive channels, and trimeric intracellular cation channels. Overall, dinoflagellates represent cells able to respond to physical and chemical stimuli utilizing a wide range of G-protein coupled receptors- and Ca2+-dependent signaling pathways. The applied approach not only shed light on the ion channel set in dinoflagellates, but also provided the information on possible molecular mechanisms underlying vital cellular processes dependent on the ion transport.

PVD 코팅법에 의한 ZnO제조 및 특성 (Preparation and characterization of Zinc Oxide films deposition by (PVD))

  • 김성진;박헌균
    • 한국신재생에너지학회:학술대회논문집
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    • 한국신재생에너지학회 2010년도 춘계학술대회 초록집
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    • pp.95.1-95.1
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    • 2010
  • Transparent conducting ZnO films were deposited to apply DSSC Substrate on glass substrates at $500^{\circ}C$ by ionbeam-assisted deposition. Crystallinity, microstructure, surface roughness, chemical composition, electrical and optical properties of the films were investigated as a function of deposition parameters such as ion energy, and substrate temperature. The microstructure of the polycrystalline ZnO films on the glass substrate were closely related to the oxygen ion energy, arrival ratio of oxygen to Zinc Ion bombarded on the growing surface. The main effect of energetic ion bombardment on the growing surface of the film may be divided into two categories; 1) the enhancement of adatom mobility at low energetic ion bombardment and 2) the surface damage by radiation damage at high energetic ion bombardment. The domain structure was obtained in the films deposited at 300 eV. With increasing the ion energy to 600 eV, the domain structure was changed into the grain structure. In case of the low energy ion bombardment of 300 eV, the microstructure of the film was changed from the grain structure to the domain structure with increasing arrival ratio. At the high energy ion bombardment of 600 eV, however, the only grain structure was observed. The electrical properties of the deposited films were significantly related to the change of microstructure. The films with the domain structure had larger carrier concentration and mobility than those with the grain structure, because the grain boundary scattering was reduced in the large size domains compared with the small size grains. The optical transmittance of ZnO films was dependent on a surface roughness. The ZnO films with small surface roughness, represented high transmittance in the visible range because of a decreased light surface scattering. By varying the ion energy and arrival ratio, the resistivity and optical transmittance of the films were varied from $1.1{\times}10^{-4}$ to $2.3{\times}10^{-2}{\Omega}cm$ and from 80 to 87%, respectively. The ZnO film deposited at 300 eV, and substrate temperature of $500^{\circ}C$ had the resistivity of $1.1{\times}10^{-4}{\Omega}cm$ and optical transmittance of 85% in visible range. As a result of experiments, we provides a suggestition that ZnO thin Films can be effectively used as the DSSC substrate Materials.

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Dpp Represses eagle Expression at Short-Range, but Can Repress Its Expression at a Long-Range via EGFR Signal Repression

  • Kim, Se Young;Jung, Keuk Il;Kim, Sang Hee;Jeon, Sang-Hak
    • Molecules and Cells
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    • 제26권6호
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    • pp.576-582
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    • 2008
  • Nervous system development takes place after positional information has been established along the dorsal-ventral (D/V) axis. The initial subdivision provided by a gradient of nuclear dorsal protein is maintained by the zygotic genes expressed along the D/V axis. In this study, an investigation was conducted to determine the range of Dpp function in repressing the expression of eagle (eg) that is present in intermediate neuroblasts defective (ind) and muscle specific homeobox (msh) gene domain. eg is expressed in neuroblast (NB) 2-4, 3-3 and 6-4 of the msh domain, and NB7-3 of the ind domain at the embryonic stage 11. In decapentaplegic (dpp) loss-of-function mutant embryos, eg was ectopically expressed in the dorsal region, while in dpp gain-of-function mutants produced by sog or sca-GAL4/UAS-dpp, eg was repressed by Dpp. It is worthy of note that Dpp produced from sim;;dpp embryos showed that Dpp could function at long range. However, Dpp produced from en-GAL4/UAS-dpp or wg-GAL4/UAS-dpp primarily acted at short-range. This result demonstrated that this discrepancy seems to be due to the repression of Dpp to EGFR signaling in sim;;dpp embryos. Taken together, these results suggest that Dpp signaling works at short-range, but can function indirectly at long-range by way of repression of EGFR signaling during embryonic neurogenesis.

고전장하에서 제조된 PVA/Gelatin 블렌드막의 구조와 팽윤거동 (Morphology and Swelling Behaviors of PVA/Gelatin Blend Membranes Prepared Under High Electric Field)

  • 허양일;윤형구
    • 폴리머
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    • 제30권6호
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    • pp.563-567
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    • 2006
  • 생체 적합성이 우수한 gelatin(GEL)과 기계적 물성이 뛰어난 poly(vinyl alcohol)(PVA)로 이루어진 블렌드막을 $3{\sim}10kV$의 고전장하에서 용액 캐스팅 법에 의해 제조하였고, 막중에 형성되는 미세한 domain 구조의 배향에 미치는 전장의 효과를 조사하였다. 5 kV이상의 높은 전장하에서 제조된 막의 경우 SEM 사진으로부터 막중의 GEL domain이 전장인가 방향으로 배향되어 있음을 관찰하였다. 이는 제막 중 상분리된 두 상의 계면장력 감소에 기인한 Maxwell의 정전 분산 효과에 의한 것으로 해석될 수 있다. 또한, 고전장 인가시 전극 판에서 발생하는 열과 GEL domain의 연신 배향 효과에 의해 PVA/GEL 블렌드막의 결정화도가 증가하는 것을 WAXD와 팽윤거동 관찰을 통해 확인 할 수 있었다.

PRIME FACTORIZATION OF IDEALS IN COMMUTATIVE RINGS, WITH A FOCUS ON KRULL RINGS

  • Gyu Whan Chang;Jun Seok Oh
    • 대한수학회지
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    • 제60권2호
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    • pp.407-464
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    • 2023
  • Let R be a commutative ring with identity. The structure theorem says that R is a PIR (resp., UFR, general ZPI-ring, π-ring) if and only if R is a finite direct product of PIDs (resp., UFDs, Dedekind domains, π-domains) and special primary rings. All of these four types of integral domains are Krull domains, so motivated by the structure theorem, we study the prime factorization of ideals in a ring that is a finite direct product of Krull domains and special primary rings. Such a ring will be called a general Krull ring. It is known that Krull domains can be characterized by the star operations v or t as follows: An integral domain R is a Krull domain if and only if every nonzero proper principal ideal of R can be written as a finite v- or t-product of prime ideals. However, this is not true for general Krull rings. In this paper, we introduce a new star operation u on R, so that R is a general Krull ring if and only if every proper principal ideal of R can be written as a finite u-product of prime ideals. We also study several ring-theoretic properties of general Krull rings including Kaplansky-type theorem, Mori-Nagata theorem, Nagata rings, and Noetherian property.

Purification, crystallization and X-ray diffraction of heparan sulfate bounded human RAGE

  • Park, Jun bae;Yoo, Youngki;Ong, Belinda Xiang Yu;Kim, Juyeon;Cho, Hyun-Soo
    • Biodesign
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    • 제5권3호
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    • pp.122-125
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    • 2017
  • Receptor for advanced glycation end products (RAGE) is one of the single transmembrane domain containing receptors and causes various inflammatory diseases including diabetes and atherosclerosis. RAGE extracellular domain has three consecutive IgG-like domains (V-C1-C2 domain) which interact with various soluble ligands including heparan sulfate or HMGB1. Studies have shown that each ligand induces different oligomeric forms of RAGE which results in a ligand-specific signal transduction. The structure of mouse RAGE bound to heparan sulfate has been previously determined but the electron density map of heparan sulfate was too ambiguous that the exact position of heparin sulfate could not be defined. Furthermore, the complex structure of human RAGE and heparin sulfate still remains elusive. Therefore, to determine the structure, human RAGE was overexpressed using bacterial expression system and crystallized using the sitting drop method in the condition of 0.1 M sodium acetate trihydrate pH 4.6, 8 % (w/v) polyethylene glycol 4,000 at 290 K. The crystal diffracted to 3.6 Å resolution and the space group is C121 with unit cell parameters a= 206.04 Å, b= 68.64 Å, c= 98.73 Å, α= 90.00°, β= 90.62°, γ= 90.00°.

복합재료날개의 적층각에 대한 플러터 특성 연구 (Flutter characteristics of a Composite Wing with Various Ply Angles)

  • 유재한;김동현;이인
    • 한국복합재료학회:학술대회논문집
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    • 한국복합재료학회 2000년도 춘계학술발표대회 논문집
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    • pp.126-130
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    • 2000
  • In this study, flutter characteristics of a composite wing have been studied for the variation of laminate angles in the subsonic, transonic and supersonic flow regime. The laminate angles are selected by the aspect of engineering practice such as 0, $\pm$45 and 90 degrees. To calculate the unsteady aerodynamics for flutter analysis, the Doublet Lattice Method(DLM) in subsonic flow and the Doublet Point Method(DPM) in supersonic flow are applied in the frequency domain. In transonic flow, transonic small disturbance(TSD) code is used to calculate the nonlinear unsteady aerodynamics in the time domain. Aeroelastic governing equation has been solved by v-g method in the frequency domain and also by Coupled Time-Integration Method(CTIM) in the time domain. from the results of present study, characteristics of free vibration responses and aeroelastic instabilities of a composite wing are presented for the set of various lamination angles in the all flow range.

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Time-Domain Analog Signal Processing Techniques

  • Kang, Jin-Gyu;Kim, Kyungmin;Yoo, Changsik
    • Journal of Semiconductor Engineering
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    • 제1권2호
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    • pp.64-73
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    • 2020
  • As CMOS technology scales down, the design of analog signal processing circuit becomes far more difficult because of steadily decreasing supply voltage and smaller intrinsic gain of transistors. With sub-1V supply voltage, the conventional analog signal processing relying on high-gain amplifiers is not an effective solution and different approach has to be sought. One of the promising approaches is "time-domain analog signal processing" which exploits the improving switching speed of transistors in a scaled CMOS technology. In this paper, various time-domain analog signal processing techniques are explained with some experimental results.

Off-Line PD Diagnosis for Stator Winding of Rotating Machines Using a UWB Sensor

  • Lwin, Kyaw-Soe;Park, Noh-Joon;Kim, Hee-Dong;Ju, Young-Ho;Park, Dae-Hee
    • Journal of Electrical Engineering and Technology
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    • 제3권2호
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    • pp.263-270
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    • 2008
  • We studied partial discharge detection by sensing electromagnetic waves emitted from the partial discharge source in an HV Rotating Machine using a UWB sensor. In this study, we design a new type of compact low frequency UWB sensor based on micro-strip technology. We also perform many experiments of offline and dismantled testing compared with the existing HFCT on stator winding of the HV generator. We mention the detailed design of a new compact UWB sensor along with the time domain PRPD pattern and frequency domain results of partial discharge in the stator winding of a 6.6kV rotating machine by offline testing performed in a laboratory.

사람의 O-linked N-acetyl-$\beta$-D-glucosaminidase 유전자의 분석과 재조합 발현 (Analysis of Human O-GlcNAcase Gene and the Expression of the Recombinant Gene.)

  • 강대욱;서현효
    • 미생물학회지
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    • 제40권2호
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    • pp.87-93
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    • 2004
  • 세포질과 핵단백질의 serine과 threonine 잔기에 O-linked N-acetyl-$\beta$-glucosamine (O-GlcNAc)의 첨가는고등 진핵 세포에서 흔히 일어나는 번역 후 단백질의 변형 중 하나로서 단백질의 인산화와 유사한 세포 내 신호전달에 관여하는 것으로 보인다. O-GlcNAc의 첨가와 제거는 O-GlcNAc transferase (OGT)와 O-linked N-acetyl-$\beta$-D-glucos-aminidase (O-GlcNAcase) 효소에 의해 각각 촉매된다. 두가지 종류의 사람 유래 O-GlcNAcase 유전자(O-GlcNAcase, v-O-GlcNAcase)를cloning하고 세 가지의 융합단백질로 대장균에서 생산을 시도하였다. O-GlcNAcase의 기질 유사체 인 ${\rho}$-nitrophenyl-N-acetyl-$\beta$-D-g1ucosaminide (${\rho}$NP-$\beta$-D-GlcNAc)를 기질로 사용하여 효소활성을 측정 한 결과 v-O-GlcNAcase는 활성을 나타내지 않았다. 여러 종류의 amino sugar 기질 유사체를 사용하여 O-GlcNAcase의 활성을 측정하였으나 오직 ${\rho}$NP-$\beta$-D-GlcNAc만이 활성을 보였다. Blast검색으로 분석한 결과 아미노 말단의 hyaluronidase-like domain (hyaluronidase-유사 영역)과 카르복시 말단의 N-acetyltransferase 영역 두 곳의 conserved domains 존재하였다. 효소촉매에 중요한 영역을 밝히기 위해 여러 deletion mutants(결손 변이체)를 제작한 후 효소활성을 측정하고 Western blot으로 분석하였다. Hyaluronidas-유사 영역, 유전자 내부와 N-acetyltransferase 영역을 제거할 경우 효소활성이 사라졌으나 아미노 말단의 55개 아미노산과 카르복시 말단의 truncation은 활성을 일부분 유지하였다. 위의 사실에 기초하여 hyaluronidas-유사 영역은 효소활성에 중요하고 카르복시 말단의 N-acetyltransferase 영역은 조절기능으로 작용하는 것으로 추정된다.