• Title/Summary/Keyword: synthetic analysis

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Novel High-Throughput DNA Part Characterization Technique for Synthetic Biology

  • Bak, Seong-Kun;Seong, Wonjae;Rha, Eugene;Lee, Hyewon;Kim, Seong Keun;Kwon, Kil Koang;Kim, Haseong;Lee, Seung-Goo
    • Journal of Microbiology and Biotechnology
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    • v.32 no.8
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    • pp.1026-1033
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    • 2022
  • This study presents a novel DNA part characterization technique that increases throughput by combinatorial DNA part assembly, solid plate-based quantitative fluorescence assay for phenotyping, and barcode tagging-based long-read sequencing for genotyping. We confirmed that the fluorescence intensities of colonies on plates were comparable to fluorescence at the single-cell level from a high-end, flow-cytometry device and developed a high-throughput image analysis pipeline. The barcode tagging-based long-read sequencing technique enabled rapid identification of all DNA parts and their combinations with a single sequencing experiment. Using our techniques, forty-four DNA parts (21 promoters and 23 RBSs) were successfully characterized in 72 h without any automated equipment. We anticipate that this high-throughput and easy-to-use part characterization technique will contribute to increasing part diversity and be useful for building genetic circuits and metabolic pathways in synthetic biology.

Meta-analysis and Systematic Review on the Effects of Herbal Medicine and Synthetic Drugs in Helicobacter pylori Infection: Focusing on PubMED (Helicobacter pylori infection에 대한 한약과 합성의약품 병용투여 효과에 대한 메타분석 및 체계적 문헌고찰 : PubMED를 중심으로)

  • Jeong, Seol;Gwak, Seung Yeon;Cho, Eun ji;Jerng, Ui Min
    • The Korea Journal of Herbology
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    • v.36 no.5
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    • pp.69-79
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    • 2021
  • Objectives : In clinical practice, there are many cases of co-administration of herbal medicine and synthetic drugs. This study tried to identify whether the combined administration of herbal medicine and synthetic drugs including amoxicillin increases Helcicobacter pylori eradication rate compared to the single administration of synthetic drugs or the combined administration of synthetic drugs and placebo herbal medicine through systematic review. Methods : Relevant randomized controlled trials were searched in PubMED database. The risk of biases was assessed through the Cochrane Risk of Bias criteria. Three reviewers were extracted the characteristics and outcomes of each study. Meta-analysis of eradication rate and adverse event was conducted. Results : Four RCTs were selected. In meta-analysis, the combination of herbal medicine and synthetic drugs showed eradication effect, but it was not statistically significant (Odds Ratio [OR] 0.46; 95% confidence interval [CI] 0.17 to 1.24; p=0.13; I2=56%) than administration of synthetic medicine alone. Combination of herbal medicine and synthetic medicine did not increased the incidence of adverse event(OR 1.07; 95% CI 0.72 to 1.59; p=0.68, I2=0%) compared to single administration of synthetic medicine. Conclusion : Although no significant difference was observed between the two groups in the eradication rate and the incidence rate of adverse events, it was difficult to draw a clear conclusion due to the heterogeneity between studies and the low quality of reporting. A number of studies that have overcome these limitations in the future will lead to definite conclusions.

Perception Ability of Synthetic Vowels in Cochlear Implanted Children (모음의 포먼트 변형에 따른 인공와우 이식 아동의 청각적 인지변화)

  • Huh, Myung-Jin
    • MALSORI
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    • no.64
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    • pp.1-14
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    • 2007
  • The purpose of this study was to examine the acoustic perception different by formants change for profoundly hearing impaired children with cochlear implants. The subjects were 10 children after 15 months of experience with the implant and mean of their chronological age was 8.4 years and Standard deviation was 2.9 years. The ability of auditory perception was assessed using acoustic-synthetic vowels. The acoustic-synthetic vowel was combined with F1, F2, and F3 into a vowel and produced 42 synthetic sound, using Speech GUI(Graphic User Interface) program. The data was deal with clustering analysis and on-line analytical processing for perception ability of acoustic synthetic vowel. The results showed that auditory perception scores of acoustic-synthetic vowels for cochlear implanted children were increased in F2 synthetic vowels compaire to those of F1. And it was found that they perceived the differences of vowels in terms of distance rates between F1 and F2 in specific vowel.

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Synthetic data generation by probabilistic PCA (주성분 분석을 활용한 재현자료 생성)

  • Min-Jeong Park
    • The Korean Journal of Applied Statistics
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    • v.36 no.4
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    • pp.279-294
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    • 2023
  • It is well known to generate synthetic data sets by the sequential regression multiple imputation (SRMI) method. The R-package synthpop are widely used for generating synthetic data by the SRMI approaches. In this paper, I suggest generating synthetic data based on the probabilistic principal component analysis (PPCA) method. Two simple data sets are used for a simulation study to compare the SRMI and PPCA approaches. Simulation results demonstrate that pairwise coefficients in synthetic data sets by PPCA can be closer to original ones than by SRMI. Furthermore, for the various data types that PPCA applications are well established, such as time series data, the PPCA approach can be extended to generate synthetic data sets.

Technology Trend in Synthetic Aperture Radar (SAR) Imagery Analysis Tools (SAR(Synthetic Aperture Radar) 영상 분석도구 개발기술 동향)

  • Lee, Kangjin;Jeon, Seong-Gyeong;Seong, Seok-Yong;Kang, Ki-mook
    • Journal of Space Technology and Applications
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    • v.1 no.2
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    • pp.268-281
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    • 2021
  • Recently, the synthetic aperture radar (SAR) has been increasingly in demand due to its advantage of being able to observe desired points regardless of time and weather. To utilize SAR data, first of all, many pre-processing such as satellite orbit correction, radiometric calibration, multi-looking, and geocoding are required. For analysis of SAR imagery such as object detection, change detection, and DEM(Digital Elevation Model), additional processings are needed. These pre-processing and additional processes are very complex and require a lot of time and computational resources. In order to handle the SAR images easily, the institutions that use SAR images develop analysis tools and provide users. This paper introduces the function and characteristics of representative SAR imagery analysis tools.

Analysis and optimization of Wiel-Dobke synthetic testing circuit parameters (Weil-Dobke 합성단락 시험회로의 Parameter 분석과 최적화)

  • Kim, Maeng-Hyun;Rhyou, Hyeong-Kee;Park, Jong-Wha;Koh, Hee-Seog
    • Proceedings of the KIEE Conference
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    • 1995.07b
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    • pp.623-627
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    • 1995
  • This paper describes analysis and optimization of Weil-Dobke synthetic testing circuit parameters, which is efficient and economical test method in high capacity AC circuit breaker. In this paper, analysis of synthetic short-circuit test circuit parameter proposed nondimensional factor that is reciprocal comparison value of circuit parameter and is not related to rated of circuit breaker, in particular, this study induce minimization of required energy of critical TRV generation specified in IEC 56 standards and present optimal design of synthetic short circuit testing facilities.

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Structural Analysis of Synthetic Heat Transfer Fluid Boiler (열매체보일러의 구조해석)

  • Lee, Jong-Sun
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.13 no.8
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    • pp.3352-3357
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    • 2012
  • In this paper, 3-dimensional designing program CATIA was used to design in order to investigate causes of a fire in a boiler using synthetic heat transfer fluid. And also structural analysis was conducted to the boiler by using 3-dimensional finite element code, ANSYS. Maximum temperature, maximum stress, and maximum strain were obtained at the normal condition and after fire.

Development of VSI Synthetic Control Chart (가변샘플링기법을 이용한 합성관리도의 개발)

  • Song, Suh-Ill;Park, Hyun-Kyu
    • Journal of Korean Society for Quality Management
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    • v.33 no.1
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    • pp.1-10
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    • 2005
  • This paper develops a new VSI $\={X}-CRL$ synthetic control chart that considers convenience of use in the field, and perception of change of process applying VSI techniques to synthetic control chart, simultaneously. We found the optimal sampling interval and various control limit factor of the suggested chart using markov chain. Comparison and analysis is carried out between synthetic VSI $\={X}-CRL$ chart and other chart in the statistical aspect; $\={X}$ control chart, VSI $\={X}$ chart, another synthetic chart. In case that the process follows normal distribution, the proposed VSI $\={X}-CRL$ synthetic control chart in detecting process mean shift showed the best performance in aspect of statistical performance, regardless of control limit L of CRL/S control chart.

A Synthetic Aperture Focusing Method for Three-way Dynamic Focusing

  • Kim Jung-Jun;Chang Jin-Ho;Song Tai-Kyong
    • Journal of Biomedical Engineering Research
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    • v.26 no.1
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    • pp.31-35
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    • 2005
  • A novel synthetic aperture method for real-time three-way dynamic focusing is proposed, which provides lateral beam patterns represented as the product of Fourier transforms of transmit subaperture, receive subaperture, and a synthetic window function. In the proposed method, all array elements are fired individually and for each firing echo signals are recorded from all elements of a receive subaperture moving along an array with the transmit element. The three-way dynamic focusing is then achieved by employing a synthetic aperture algorithm for two-way dynamic focusing and a synthetic focusing method for transmit dynamic focusing. Both theoretical analysis and computer simulation results show that the proposed method produces ultrasound beams with improved lateral resolution at all depths compared to the conventional phased array imaging and synthetic aperture focusing methods.

Synthetic Data Generation and Performance Analysis for Anomaly Detection (이상 탐지를 위한 합성 데이터 생성 및 성능 분석)

  • Hwang, Ju-hyo;Jin, Kyo-hong
    • Proceedings of the Korean Institute of Information and Commucation Sciences Conference
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    • 2022.10a
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    • pp.19-21
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    • 2022
  • Anomaly detection using self-supervised learning typically generates synthetic data to learn to classify normal and abnormal, and uses real abnormal data as test data to measure anomaly detection performance. In a study using this method to generate synthetic data similar to normal data, anomaly detection was carried out by generating synthetic data by cutting and pasting a specific patch from the original image. In this way, the degree of similarity to normal data depends on the number and size of patches, which affects anomaly detection performance. In this paper, synthetic data were generated by varying patch sizes and numbers, and then similarity and analysis with normal data were conducted using a pre-trained model, and anomaly detection performance was measured by learning the model.

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