• 제목/요약/키워드: structural determination

검색결과 769건 처리시간 0.027초

Structural Basis of the Disease-related Proteins: Target Oriented Structural Proteomics

  • Jinho Moon;Heo, Yong-Suk;Kim, Young-Kwan;Kim, Hye-Yeon;Park, Min-Hye;Hwang, Kwang-Yeon
    • 한국결정학회:학술대회논문집
    • /
    • 한국결정학회 2003년도 춘계학술연구발표회
    • /
    • pp.15-15
    • /
    • 2003
  • To discover new drugs more quickly and more efficiently, pharmaceutical companies and biotechnology firms are increasingly turning to the genomics and the structural proteomics technologies. Structural-proteomics can provide a foundation for this through the determination and analysis for protein structure on a genomics scale. Among many structures determined by CGI, we will present with the representative examples drawn from our work on novel structures or complex structures of the disease-related proteins. The alpha subunit of Hypoxia-inducible factor (HIF) is targeted for degradation under normoxic conditions by an ubiquitin-ligase complex that recognizes a hydroxylated proline residue in HIF. Hydroxylation is catalysed by HIF prolyl 4-hydroxylases (HIFPH) which are fe(II) and 2-oxoglutarate (2-OG) dependent oxygenases. Here, we discuss the first crystal structure of the catalytic domain of HIFPH in complexes, with the Fe(II)/2-OG at 1.8Å. These structures suggest that the Ll region (residues 236-253), which is also conserved in mammals, form a 'lid' that closes over the active site. The structural and mutagenesis analyses allow us to provide a focus for understanding cellular responses to hypoxia and a target for the therapeutic manipulation.

  • PDF

Structural Basis of the Disease-related Proteins: Target Oriented Structural Proteomics

  • Hwang, Kwang-Yeon;Lee, Tae-Gyu;Kim, Jin-Hwan;Jeon, Young-Ho;Seonggu Ro;Cho, Joong-Myung
    • 한국생물물리학회:학술대회논문집
    • /
    • 한국생물물리학회 2003년도 정기총회 및 학술발표회
    • /
    • pp.28-28
    • /
    • 2003
  • To discover new drugs more quickly and more efficiently, pharmaceutical companies and biotechnology firms are increasingly turning to the genomics and the structural proteomics technologies. Structural-proteomics can provide a foundation for this through the determination and analysis for protein structure on a genomics scale. Among many structures determined by CGI, we will present with the representative examples drawn from our work on novel structures or complex structures of the disease-related proteins. The alpha subunit of Hypoxia-inducible factor (HIF) is targeted for degradation under normoxic conditions by an ubiquitin-ligase complex that recognizes a hydroxylated proline residue in HIF, Hydroxylation is catalysed by HIF prolyl 4-hydroxylases (HIFPH) which are Fe(II) and 2-oxoglutarate (2-OG) dependent oxygenases. Here, we discuss the first crystal structure of the catalytic domain of HIFPH in complexes, with the Fe(II)/2-OG at 1.8 ${\AA}$. These structures suggest that the L1 region (residues 236-253), which is also conserved in mammals, form a ‘lid’ that closes over the active site. The structural and mutagenesis analyses allow us to provide a focus for understanding cellular responses to hypoxia and a target for the therapeutic manipulation.

  • PDF

Efficient determination of combined hardening parameters for structural steel materials

  • Han, Sang Whan;Hyun, Jungho;Cho, EunSeon;Lee, Kihak
    • Steel and Composite Structures
    • /
    • 제42권5호
    • /
    • pp.657-669
    • /
    • 2022
  • Structural materials can experience large plastic deformation under extreme cyclic loading that is caused by events like earthquakes. To evaluate the seismic safety of a structure, accurate numerical material models should be used. For a steel structure, the cyclic strain hardening behavior of structural steel should be correctly modeled. In this study, a combined hardening model, consisting of one isotropic hardening model and three nonlinear kinematic hardening models, was used. To determine the values of the combined hardening model parameters efficiently and accurately, the improved opposition-based particle swarm optimization (iOPSO) model was adopted. Low-cycle fatigue tests were conducted for three steel grades commonly used in Korea and their modeling parameters were determined using iOPSO, which was first developed in Korea. To avoid expensive and complex low cycle fatigue (LCF) tests for determining the combined hardening model parameter values for structural steel, empirical equations were proposed for each of the combined hardening model parameters based on the LCF test data of 21 steel grades collected from this study. In these equations, only the properties obtained from the monotonic tensile tests are required as input variables.

사람치아에서 성별감정시 RPS4Y 유전자의 유용성 (Usefulness of RPS4Y Gene on Sex Determination in Human Teeth)

  • 윤왕로;안종모;윤창륙
    • Journal of Oral Medicine and Pain
    • /
    • 제33권1호
    • /
    • pp.59-66
    • /
    • 2008
  • 사람 Y염색체상에 존재하는 RPS4Y(Ribosomal Protein S4Y) 유전자는 성별감정시 유용한 유전자로 규명되어 유전질환의 조기 발견이나 예방 및 태아의 성별판정 등에 응용되고 있다. 신원이 불분명한 사체에서 성별감정시, 기존의 성별감정에 이용되고 있는 다른 유전자와 함께 RPS4Y 유전자를 검색함으로써 성별감정의 신뢰도를 높힐 수 있을 것으로 사료된다. 또한 사체의 손상이 심할 때 유전자를 이용한 개인식별은 제한을 받게 된다. 이때 치아는 인체의 기관 중 가장 견고한 구조로 구성되어 있어 외부 환경에 대한 물리적, 화학적 저항성이 높아 법의치과학적 개인식별에 널리 이용되므로, 본 연구에서는 사람 치아에서 중합효소연쇄반응법을 이용한 RPS4Y유전자를 검출하여 법의학적 성별감정에 응용하고자 하였다. 남녀 각각 10개의 치아에서 치수와 상아질을 분리한 후 DNA를 추출하여 중합효소연쇄반응을 시행하였다. RPS4Y 유전자를 검출한 결과, 남자에게서만 특이적으로 유전자가 검출되었으며, 이는 사람 치아에서 RPS4Y 유전자를 이용한 성별감정이 법의학적 개인식별의 성별감정 실무에 있어서 다른 유전자와 함께 유용하게 사용될 수 있을 것으로 사료된다.

Gaussian mixture model for automated tracking of modal parameters of long-span bridge

  • Mao, Jian-Xiao;Wang, Hao;Spencer, Billie F. Jr.
    • Smart Structures and Systems
    • /
    • 제24권2호
    • /
    • pp.243-256
    • /
    • 2019
  • Determination of the most meaningful structural modes and gaining insight into how these modes evolve are important issues for long-term structural health monitoring of the long-span bridges. To address this issue, modal parameters identified throughout the life of the bridge need to be compared and linked with each other, which is the process of mode tracking. The modal frequencies for a long-span bridge are typically closely-spaced, sensitive to the environment (e.g., temperature, wind, traffic, etc.), which makes the automated tracking of modal parameters a difficult process, often requiring human intervention. Machine learning methods are well-suited for uncovering complex underlying relationships between processes and thus have the potential to realize accurate and automated modal tracking. In this study, Gaussian mixture model (GMM), a popular unsupervised machine learning method, is employed to automatically determine and update baseline modal properties from the identified unlabeled modal parameters. On this foundation, a new mode tracking method is proposed for automated mode tracking for long-span bridges. Firstly, a numerical example for a three-degree-of-freedom system is employed to validate the feasibility of using GMM to automatically determine the baseline modal properties. Subsequently, the field monitoring data of a long-span bridge are utilized to illustrate the practical usage of GMM for automated determination of the baseline list. Finally, the continuously monitoring bridge acceleration data during strong typhoon events are employed to validate the reliability of proposed method in tracking the changing modal parameters. Results show that the proposed method can automatically track the modal parameters in disastrous scenarios and provide valuable references for condition assessment of the bridge structure.

Compound K 측정을 위한 ELISA법 개발 (Development of ELISA Method for the Determination of Compound K)

  • 류미나;이해광;성종환;성충기
    • 생약학회지
    • /
    • 제46권4호
    • /
    • pp.279-282
    • /
    • 2015
  • In order to quantify compound K(CK), anticancer component of Panax ginseng C. A. Meyer, high titer rabbit polyclonal antibodies (pAbs) were raised against a conjugate of CK and bovine serum albumin coupled by a periodate oxidation method. Coating antigen (CK-OVA) was also prepared by the same method with OVA. As a result of optimization of antiserum dilution (2,000 fold), coating antigen ($25{\mu}g/ml$) and other condition (incubation time, temperature and washing method), ELISA method for the determination of CK was established. The measuring range extended from 0.5 ng/ml to 25 ng/ml of CK. The antibodies exhibited minor or even no cross reactivities with protopanaxatriol (1.56%) and other tested ginsenosides, $GRb_1$ (0.11%), $GRg_1$ (0.07%) except protopanaxadiol (87.2%) from the structural similarity. And the antibody showed good correlation (r=0.987) between the assay values obtained by this ELISA method and HPLC. Therefore, the ELISA method could be very useful tools for the determination of CK in biological fluids because of their high sensitivity and specificity.

옴니채널 환경에서 소비자의 자기결정 동기와 서비스품질이 옴니채널 서비스 구매의도에 미치는 영향 (Effects of Consumer Self-Determination Motivation and Service Quality on Purchase Intention of Omni-Channel Service in Omni-Channel Environment)

  • 박준용;김지수;김보영
    • 한국IT서비스학회지
    • /
    • 제18권4호
    • /
    • pp.23-38
    • /
    • 2019
  • With the development of information and communication technology, logistics distribution systems and services have been improved, new types of services have been provided, and consumption patterns in consumer markets have also changed. In the domestic distribution market, the development of ICT technology, the spread of smart devices, and the growth of the e-commerce market have led to Omni-channel, a service that integrates offline channels and online channels. Omni-channel service aims to provide consumers with consistent and convenient service by integrating offline and online domain into one. Consumers can get integrated service on and offline. In this study, consumers' intention to use Omni-channel was examined by Self Determination Theory and SERVQUAL. The survey was conducted on Omni-channel user and the research model was composed of 2nd order factor model considering the characteristics of Omni-channel which provides integrated service based on the prior literature and PLS-SEM (partial least squares structural equation modeling).

평판에서 방사되는 소음의 능동구조소음제어를 위한 변환기의 위치결정 (The Determination of Transducer Locations for Active Structural Acoustic Control of the Radiated Sound from Vibrating Plate)

  • 김흥섭;홍진석;이충휘;오재응
    • 한국소음진동공학회논문집
    • /
    • 제12권9호
    • /
    • pp.694-701
    • /
    • 2002
  • In this paper, through the study on locations of structural transducers for active control of the radiated sound from the vibrating plate, the active structural acoustic control (ASAC) system is proposed. And, for the evaluation of the proposed location, the experiment of the active structural acoustic control is implemented using the multi-channel filtered-x LMS algorithm and an additional filter (Acoustic Prediction Filter) to estimate the radiated sound using the acceleration signals of the plate. The structural transducers are piezoceramic actuator (PZT) and accelerometer. PZT is used as an actuator to reduce the vibration and the radiated sound. To maximize the control performance, each PZT actuator is located at the position that has the largest control sensitivity of the plate bending moment in the direction of x and y coordinates and the optimal PZT location is validated experimentally. Also, to find the acoustic prediction filter accurately, two accelerometers are located at the positions that have the largest radiation efficiencies of the plate, and the proposed locations are validated by simulation using the Rayleigh integral. The multi-channel filtered-x LMS algorithm is introduced to control a complex 2-D structural vibration mode. Finding the locations of structural transducers for active structural acoustic control of the radiated sound, the active structural acoustic control (ASAC) system can be presented and validated by experiments using a real time control system.

거더교량의 횡방향 하중효과의 확률론적 분석 (Statistical Analysis of Transverse Load Effects in Girder Bridges)

  • 오병환;유영;최영철;이준혁;김광수
    • 한국콘크리트학회:학술대회논문집
    • /
    • 한국콘크리트학회 2001년도 가을 학술발표회 논문집
    • /
    • pp.859-864
    • /
    • 2001
  • An effective live load model for analyzing probable maximum live load effects such as moment and shear in transverse direction was developed. The main procedure of this live load model is composed of four parts, i.e., firstly, determination of the appropriate influence lines in longitudinal direction, secondly, application of the characteristics of vehicles and traffic patterns in longitudinal direction, thirdly, determination of the appropriate influence lines in transverse direction, and fourthly, application of the characteristics of vehicles and traffic patterns in transverse direction. Through this procedure, the probabilistic distributions of maximum probable load effects are deduced in the form of probability density function (PDF) and/or cumulative density function(CDF). This live load model is able to consider local or global deterioration of bridges in the structural analysis.

  • PDF

Expression and Preparation of Periostin FAS1 Domains for NMR Structure Determination

  • Yun, Hyosuk;Kim, Jae Il;Lee, Chul Won
    • 한국자기공명학회논문지
    • /
    • 제20권1호
    • /
    • pp.17-21
    • /
    • 2016
  • Periostin, a component of extracellular matrix (ECM) protein, is produced and secreted by the fibroblasts that are involved in chronic allergic inflammation diseases and various types of human cancers. Periostin protein is composed of multiple domains including four FAS1 domains which play important roles in cell adhesion and tumor metastasis by interacting with integrins. In spite of their important biological role, the structural information of periosin FAS1 domains was not revealed yet. Recently we systemically prepared various constructs of the FAS1 domains and tried to express them in E. coli. Of them, only single FAS1-II and -IV domains were highly soluble. Circular dichroism (CD) and nuclear magnetic resonance (NMR) studies revealed that the FAS1-IV domain might be suitable for three-dimensional structure determination using NMR spectroscopy.