• Journal of Microbiology and Biotechnology
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• 제32권12호
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• pp.1622-1631
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• 2022

Carotenoids, which are natural pigments found abundantly in wide-ranging species, have diverse functions and high industrial potential. The carotenoid biosynthesis pathway is very complex and has multiple branches, while the accumulation of certain metabolites often affects other metabolites in this pathway. The DsLCYB gene that encodes lycopene cyclase was selected in this study to evaluate β-carotene production and the accumulation of β-carotene in the alga Dunaliella salina. Compared with the wild type, the transgenic algal species overexpressed the DsLCYB gene, resulting in a significant enhancement of the total carotenoid content, with the total amount reaching 8.46 mg/g for an increase of up to 1.26-fold. Interestingly, the production of α-carotene in the transformant was not significantly reduced. This result indicated that the regulation of DsLCYB on the metabolic flux distribution of carotenoid biosynthesis is directional. Moreover, the effects of different light-quality conditions on β-carotene production in D. salina strains were investigated. The results showed that the carotenoid components of β-carotene and β-cryptoxanthin were 1.8-fold and 1.23-fold higher than that in the wild type under red light stress, respectively. This suggests that the accumulation of β-carotene under red light conditions is potentially more profitable.

• Journal of Plant Biotechnology
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• 제49권4호
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• pp.271-291
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• 2022

Pectin methylesterase (PME) plays an important role in vegetative and reproductive development and biotic/abiotic stress responses by regulating the degree of methyl-esterification of pectic polysaccharides in the plant cell wall. PMEs are encoded by a large multigene family in higher land plant genomes. In general, the expression of plant PME genes shows tissue- or cell-specific patterns and is induced by endogenous and exogenous stimuli. In this study, we identified PME multigene family members (CsPMEs) from the sweet orange genome and report detailed molecular characterization and expression profiling in different citrus tissues and two fruit developmental stages. We also discussed the possible functional roles of some CsPME genes by comparing them with the known functions of PMEs from other plant species. We identified 48 CsPME genes from the citrus genome. A phylogenetic tree analysis revealed that the identified CsPMEs were divided into two groups/types. Some CsPMEs showed very close phylogenetic relationships with the PMEs whose functions were formerly addressed in Arabidopsis, tomato, and maize. Expression profiling showed that some CsPME genes are highly or specifically expressed in the leaf, root, flower, or fruit. Based on the phylogenetic relationships and gene expression profiling results, we suggest that some CsPMEs could play functional roles in pollen development, pollen tube growth, cross incompatibility, root development, embryo/seed development, stomata movement, and biotic/abiotic stress responses. Our results shed light on the biological roles of individual CsPME isoforms and contribute to the search for genetic variations in citrus genetic resources.

• Computers and Concrete
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• 제31권3호
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• pp.253-265
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• 2023

In this research, the gene expression programming (GEP) technique was employed to provide a new model for predicting the maximum loading capacity of concrete-encased steel (CES) columns. This model was developed based on 96 CES column specimens available in the literature. The six main parameters used in the model were the compressive strength of concrete (f_c), yield stress of structural steel (f_ys), yield stress of steel rebar (f_yr), and cross-sectional areas of concrete, structural steel, and steel rebar (A_c, A_s and A_r respectively). The performance of the prediction model for the ultimate load-carrying capacity was investigated using different statistical indicators such as root mean square error (RMSE), correlation coefficient (R), mean absolute error (MAE), and relative square error (RSE), the corresponding values of which for the proposed model were 620.28, 0.99, 411.8, and 0.01, respectively. Here, the predictions of the model and those of available codes including ACI ITG, AS 3600, CSA-A23, EN 1994, JGJ 138, and NZS 3101 were compared for further model assessment. The obtained results showed that the proposed model had the highest correlation with the experimental data and the lowest error. In addition, to see if the developed model matched engineering realities and corresponded to the previously developed models, a parametric study and sensitivity analysis were carried out. The sensitivity analysis results indicated that the concrete cross-sectional area (A_c) has the greatest effect on the model, while parameter (f_yr) has a negligible effect.

• 한국해양생명과학회지
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• 제2권2호
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• pp.70-74
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• 2017

IL-1RAcP는 일명 interleukin-1 receptor accessory protein이라 칭하며 interleukin-1 염증성 사이토카인과 interleukin-1 receptor I (IL-1RI) 결합체와 복합체를 형성하여 작용한다. IL-1RAcP는 면역반응, 스트레스 및 세포사멸과 관련이 있다. 본 연구의 목적은 참돔(Pagrus major)을 저수온(8℃, 33 psu) 및 저염분(20℃, 10 psu) 상태에 노출시킨 후, IL-1RAcP 유전자의 발현을 관찰하는 것이다. 연구결과, IL-1RAcP 유전자의 발현은 저수온(8℃, 33 psu) 및 저염분(20℃, 10 psu) 상태에서 유의적으로 증가하는 것으로 나타났다. 이 연구결과로서 IL-1RAcP 유전자는 저수온 및 저염분 등의 환경 스트레스에 대한 생체지표유전자로서 역할을 한다고 제의한다.

• Journal of Plant Biotechnology
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• 제50권
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• pp.127-136
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• 2023

Water scarcity decreases the rate of photosynthesis and, consequently, the yield of banana plants (Musa spp). In this study, transcriptome analysis was performed to identify photosynthesis-related genes in banana plants and determine their expression profiles under water stress conditions. Banana plantlets were in vitro cultured on Murashige and Skoog agar medium with and without 10% polyethylene glycol and marked as BP10 and BK. Chlorophyll contents in the plant shoots were determined spectrophotometrically. Two cDNA libraries generated from BK and BP10 plantlets, respectively, were used as the reference for transcriptome data. Gene ontology (GO) enrichment analysis was performed using the Database for Annotation, Visualization, and Integrated Discovery (DAVID) and visualized using the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway prediction. Morphological observations indicated that water deficiency caused chlorosis and reduced the shoot chlorophyll content of banana plantlets. GO enrichment identified 52 photosynthesis-related genes that were affected by water stress. KEGG visualization revealed the pathways related to the 52 photosynthesisr-elated genes and their allocations in four GO terms. Four, 12, 15, and 21 genes were related to chlorophyll biosynthesis, the Calvin cycle, the photosynthetic electron transfer chain, and the light-harvesting complex, respectively. Differentially expressed gene (DEG) analysis using DESeq revealed that 45 genes were down-regulated, whereas seven genes were up-regulated. Four of the down-regulated genes were responsible for chlorophyll biosynthesis and appeared to cause the decrease in the banana leaf chlorophyll content. Among the annotated DEGs, MaPNDO, MaPSAL, and MaFEDA were selected and validated using quantitative real-time PCR.

• 한국축산식품학회지
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• 제24권4호
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• pp.349-354
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• 2004

돼지 골격근 근소포체의 $Ca^{2+}$ 방출통로(calcium - release channel)를 지정하는 ryanodine receptor (RYR1) 유전자의 이상은 악성고열증(malignant hyperthermia, MH)을 유발하고, RYR1 유전자의 점 돌연변이는 돼지 스트레스 증후군(porcine stress syndrome, PSS)과 밀접하게 관련되어 있다. PSS 유전인자 보유 돼지의 90% 이상은 PSE 돈육을 생산하는 것으로 알려져 있어 물퇘지 발생과 생산성 하락으로 경제적 손실을 초래하는 유전적 원인의 PSS 유전자를 검사하여 제거하는 것은 고품질 돼지고기 생산 및 국내 양돈산업의 경쟁력 향상에 매우 중요한 과제라고 할 수 있다. 따라서, 본 연구는 PCR-RFLP 및 PCR-SSCP 기법을 이용하여 PSE 돈육을 생산 하는 PSS 돼지 유전자 진단기술을 개발하고 이를 이용한 국내 종돈 및 교잡 비육돈의 PSS 유전자형 출현빈도를 파악하고자 수행하였다. 돼지 PSS의 원인이 되는 RYR 유전자의 단일염기 돌연변이 (RYR1 C1843T)를 포함하는 DNA 영역을 PCR로 증폭한 후 RFLP 및 SSCP 기법을 이용하여 분석한 결과 동형접합체의 정상 개체(N/N), 이형접합체의 잠재성 개체(N/n)그리고 열성의 돌연변이 유전자를 동형접합체 상태로 갖는 PSS 감수성 개체(n/n)에 각각 특이적인 RFLP 및 SSCP 유전자형이 검출되어 PSS 저항성, 잠재성 및 감수성 개체의 정확한 판별이 가능하였다. 돼지 주요 품종 집단내 PSS유전자형 출현빈도를 조사한 결과 Landrace는 PSS저항성 개체가 57.1%, 잠재성 개체가 35.7%그리고 PSS 감수성 개체의 출현 비율은 7.1%로 분석되었고 L. Yorkshire는 82.5, 15.8 및 1.7%, Duroc은 95.2, 4.8 및 0.0%로 각각 조사되었다. 비육용 교잡돈은 정상 개체가 72.0%, 잠재성 개체가 22.7% 그리고 PSS 감수성 개체는 5.3%였다. 특히, PCR-SSCP 기법을 이용한 RYR1 유전자 돌연변이 검출 방법은 보다 신속 간편하면서도 상대적으로 분석비용이 저렴한 정확성이 높은 PSS 돼지 진단기술로서 대규모 돼지집단 검색이나 RFLP 방법으로 판정이 불확실한 시료의 재검에 효율적으로 이용할 수 있을 것으로 판단된다.

• 생명과학회지
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• 제27권10호
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• pp.1111-1120
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• 2017

내습성 및 감수성 선발계통 각 1점씩을 대상으로 침수처리 후 GO 분석을 통해 추출된 유전자들을 기능별로 분류해보면 생물학적 과정(biological process)에 관여하는 유전자 발현이 가장 크게 영향을 받았으며, 분자 기능(molecular function)과 세포 요소(cellular component) 관련 유전자를 포함하여 모든 기능의 유전자 발현 변화가 감수성 계통보다 내습성 계통에서 크게 일어났다. 침수처리 후 발현 양상이 유의하게 차이나는 유전자의 보다 자세한 기능을 측정한 결과 내습성 계통에서 발현량이 증가한 유전자는 CA02g26670은 CONSTANS protein과 관련있는 유전자로 일장조건에 따른 개화조절에 관여하는 유전자이며, 발현량이 감소한 유전자는 CA01g21450, CA01g22480, CA01g34470, CA02g00370, CA02g00380이었다. 감수성 계통에서 침수처리 후 발현량이 증가한 유전자는 CA02g09720, CA02g21290, CA03g16520, CA07g02110, CA12g17910이었는데 각각 단백질 분해효소 활성 저해, DNA binding, 세포벽 분해효소 억제, nodulin 관련 유전자 등으로 밝혀진 유전자들이었다. 감수성 계통에서 발현량이 감소한 유전자는 CA02g02820, CA03g21390, CA06g17700, CA07g18230로 각각 칼슘이온결합, 고온환경 발현기작, 레시틴 생합성 경로의 수용성중간대사체인 phosphocholine 합성 및 저온스트레스 관련 등의 기능을 한다. 내습성 계통과 감수성 계통에서 동시에 발현이 증가한 유전자는 고온 등 환경스트레스로 인한 apoptosis와 관련된 유전자와 peroxidase와 관련있는 유전자로 확인되었고, 발현이 동시에 감소한 유전자는 nucleoside transporter인 CA02g16990로 확인되었으며, 나머지 선발 유전자는 유전자 발현이 확인되지 않았다. 내습성 및 감수성 계통간 습해 조건에서 발현에 차이를 보이는 유전자 구명을 기반으로 향후 불량환경에 대해 저항성을 보이는 계통 육성 및 관련 생리반응에 대한 다양한 연구가 필요하다.

• 생물정신의학
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• 제19권2호
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• pp.106-113
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• 2012

Objectives : The purpose of this study is to investigate the relationship between the triallelic serotonin transporter gene and stressful life events to determine their effect on depression with alcohol dependence. Methods : Ninety-five hospitalized patients with alcohol dependence (73 male, 22 female) were enrolled in this study. Thirty-two (33.7%) of the total patients were diagnosed with major depressive disorder and dysthymic disorder by Structured Clinical Interview for Diagnostic and Statistical Manual of Mental Disorders-IV. The characteristics of stress were evaluated using the stressful life events scale, and depressive symptoms were assessed using the depression scale (Beck Depression Inventory, BDI). Alcoholism with depression (n = 32) and alcoholism without depression (n = 63) were genotyped for the triallelic serotonin transporter gene ($L_A$ : higher expressing allele, $L_G$/S : lower expressing allele). Results : There was no significant difference in the allele frequency between the depression group and the non-depression group (${\chi}^2$ = 0.345, p = 0.619). $L_G$/S alleles had more comorbid depression in the higher score of stressful life events scale [Mental-Haenszel (MH)-${\chi}^2$ = 4.477, p = 0.034]. But there was no significant difference in the comorbidity according to the scores from the stressful life event scale in the $L_A$ alleles (MH-${\chi}^2$ = 0.741, p = 0.399). In the results, alcohol-dependent individuals with $L_G$/S alleles had more comorbid depression than those with $L_A$ alleles when they had experienced severe stressful life events (MH-odds ratio = 2.699, p = 0.028). Conclusions : These results suggest that there is no direct relationship between triallelic serotonin transporter gene and depression in the alcohol dependent patients. But alcohol dependent individuals with the lower expressing alleles of the serotonin transporter gene were more susceptible to depression than those with the higher expressing alleles in response to stressful life events.

• 한국자원식물학회지
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• 제18권1호
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• pp.15-21
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• 2005

염류내성 식물은 염류농도의 변화에 따라 세포내의 삼투압을 유지하기 위한 화합물을 합성하는 기작을 가지고 있는데 이런 화합물은 주로 proline, glycine, betaine, polyols, sugar등으로 체내에 축적함으로서 고농도의 염류에 견디는 것으로 알려져 있다. Betaine은 미생물에서 2단계 반응을 통해 choline에서 합성되는데, 첫단계는 choline dehydrogenase (CDH)에 의해서 촉매되고(Bet A gene), bet B 유전자의 산물인 betaine aldehyde dehydrogenase(BADH)에 의해 수행된다. 본 실험에서는 Bet A, Bet B 유전자를 아그로박테리움에 도입하여 새로운 conjugants 2 종을 획득하였으며 (Agrobacterium tumefaciens MP90/pBet A, Agrobacterium tumefaciens MP90/pBet B), 먼저 재조합된 binary vector가 식물에서 발현 및 형질 전환되는지 여부를 조사하기 위해서 이미 담배에 형질전환을 시켰으며, 형질전환된 담배에서는 ,고농도의 kanamycin배지에서 생장이 가능하였고, PCR에 의하여 NPT II, Bet A, Bet B gene를 조사한 결과 담배 유식물체 모두 band가 형성되어 형질전환체임을 확인할 수 있었다. 인삼에 Beth, BetB gene의 도입은 1M의 mannitol이 함유된 식물호르몬 무첨가 MS 배지에서 단일배 발생방법에 형질전환체를 획득하였으나, 형질전환체의 발생빈도$(12\%)$가 매우 낮았다.

• Nutrition Research and Practice
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• 제16권1호
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• pp.14-32
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• 2022

BACKGROUND/OBJECTIVES: Peroxisome proliferator-activated receptor-gamma co-activator-1α (PGC-1α) has a central role in regulating muscle differentiation and mitochondrial metabolism. PGC-1α stimulates muscle growth and muscle fiber remodeling, concomitantly regulating lactate and lipid metabolism and promoting oxidative metabolism. Gynostemma pentaphyllum (Thumb.) has been widely employed as a traditional herbal medicine and possesses antioxidant, anti-obesity, anti-inflammatory, hypolipemic, hypoglycemic, and anticancer properties. We investigated whether G. pentaphyllum extract (GPE) and its active compound, gypenoside L (GL), affect muscle differentiation and mitochondrial metabolism via activation of the PGC-1α pathway in murine C2C12 myoblast cells. MATERIALS/METHODS: C2C12 cells were treated with GPE and GL, and quantitative reverse transcription polymerase chain reaction and western blot were used to analyze the mRNA and protein expression levels. Myh1 was determined using immunocytochemistry. Mitochondrial reactive oxygen species generation was measured using the 2'7'-dichlorofluorescein diacetate assay. RESULTS: GPE and GL promoted the differentiation of myoblasts into myotubes and elevated mRNA and protein expression levels of Myh1 (type IIx). GPE and GL also significantly increased the mRNA expression levels of the PGC-1α gene (Ppargc1a), lactate metabolism-regulatory genes (Esrra and Mct1), adipocyte-browning gene fibronectin type III domain-containing 5 gene (Fndc5), glycogen synthase gene (Gys), and lipid metabolism gene carnitine palmitoyltransferase 1b gene (Cpt1b). Moreover, GPE and GL induced the phosphorylation of AMP-activated protein kinase, p38, sirtuin1, and deacetylated PGC-1α. We also observed that treatment with GPE and GL significantly stimulated the expression of genes associated with the anti-oxidative stress response, such as Ucp2, Ucp3, Nrf2, and Sod2. CONCLUSIONS: The results indicated that GPE and GL enhance exercise performance by promoting myotube differentiation and mitochondrial metabolism through the upregulation of PGC-1α in C2C12 skeletal muscle.