• Title/Summary/Keyword: similarity percentage analysis

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Classification and Selection of the Breeding Materials in the Silkworm, Bombyx mori, by Multivariate Analysis 2. Combining Ability and its Pre-estimate for the Top Cross Set made from the Silkworm Parental Lines Selected by Principal Component Analysis. (다변량 해석법에 의한 누에 육종소재의 탐색 2. 주성분 SCORE에 의하여 분류된 주요잠품종간의 TOP 교잡에 의한 조합능력 검정과 예측)

  • 정도섭;이인전;이상몽;김삼은
    • Journal of Sericultural and Entomological Science
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    • v.32 no.1
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    • pp.17-30
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    • 1990
  • A 6${\times}$4 top-cross set was made from the ten silkworm parental lines selected by the first principal component scores. They were also analysed for the relationship between the combining ability and the first principal component score. The highest general combining ability effects were detected in the parental lines of Japanese, N39 and chinese, C46, for the most quantitative characters in the study. The first principal component score of factors related to silk productivity in the parents was significantly and positively correlated to the general combining ability of the twelve characters such as cocoon yield, cocoon weight, cocoon shell weight, cocoon shell percentage, duration of the 5th instar larvae, total larval period, length of a bave, weight of a have, non-breaking length of a bave, non-breaking weight of a have, raw silk percentage, and neatness. Similarity distance (D$^2$) was related to the specific combining ability of the characters such as cocoon yield, non-breaking length of a bave, non-breaking weight of a have, non-breaking ratio of a bave, raw silk percentage, neatness. From the results, it is possible to predict the general combining ability effects by the principal component scores for the 12 characters of the parents related to silk productivity.

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Species Composition and Community Structure of Fish by Coastal Stow Net Catch from the Coastal Waters Off Boryeong, Korea (서해 보령 연안 연안개량안강망에 어획된 어류의 종조성 및 군집구조)

  • Choi, Dong hyuk;Yoon, Byoung il;Kim, Maeng jin;Lee, Seung jong
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.53 no.5
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    • pp.761-772
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    • 2020
  • In order to study about species composition and community structure of fish in the coastal water off Boryeong were investigated from January 2018 to December 2019. A total of 10,863 individuals of 87 species of 44 families were collected. The dominant species were Liparis tanakai accounted for 19.8 percent of the total with Amblychaeturichthys hexanema and Collichthys niveatus accounted for 12.4 percent and 11.0 percent of the total number. A cluster analysis based on the Bray-Curtis similarity revealed that the fish community divided into two groups, According to season. The fish species that appeared summer and autumn were mainly migratory, while the fish species that appeared in spring and winter were mainly resident species. Fish caught by stow net had a high percentage of immature fish. It presented that coastal water off Boryeong is located an important spawning and nursery for fisheries resource.

Similarity Analysis for the Dispersion of Spiraling Modes on Metallic Nanowire to a Planar Thin Metal Layer

  • Lee, Dong-Jin;Park, Se-Geun;Lee, Seung-Gol;O, Beom-Hoan
    • Journal of the Optical Society of Korea
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    • v.17 no.6
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    • pp.538-542
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    • 2013
  • We propose a simple model to elucidate the dispersion behavior of spiraling modes on silver nanowire by finding correspondence parameters and building a simple equivalent relationship with the planar insulator-metal-insulator geometry. The characteristics approximated for the proposed structure are compared with the results from an exact solution obtained by solving Maxwell's equation in cylindrical coordinates. The effective refractive index for our proposed equivalent model is in good agreement with that for the exact solution in the 400-2000 nm wavelength range. In particular, when the radius of the silver nanowire is 100 nm, the calculated index shows typical improvements; the average percentage error for the real part of the effective refractive index is reduced to only 5% for the $0^{th}$ order mode (11.9% in previous results) and 1.5% for the $1^{st}$ order mode (24.8% in previous results) in the 400-800 nm wavelength range. This equivalent model approach is expected to provide further insight into understanding the important behavior of nanowire waveguides.

The Analysis of Forest Ecosystem in Wangpicheon Area, Uljin-gun, Gyeongsangbuk-do, Korea -With a Special Reference to Vegetation- (울진군 왕피천 주변지역의 산림생태계 분석 -식생분야를 중심으로-)

  • 최송현;김정호
    • Korean Journal of Environment and Ecology
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    • v.17 no.2
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    • pp.153-168
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    • 2003
  • Wangpicheon, which is located in Uljin-Gun, Korea, is threatened with various developments plan recently. To investigate the forest structure, actual vegetation and degree of green naturality(DGN) in Wangpicheon, survey was carried out within about 1km width from the stream. In the analysis of actual vegetation, the forest type around Wangpicheon is differentiated into 26 vegetation ones. In these, six Pinus densiflora - dominated vegetation types are appeared a great many of them. In DGN analysis, 70.8% of total area is covered by DGN 8 and 0.3% of total area is covered by DGN 9. According to the analysis of classification by TWINSPAN, the community was divided by three types of Pinus densiflora community and two types of Quercus spp. community i.e. Quercus mongolica and Q. vuliabitis community. The structure of communities were analyzed using importance percentage, and species and individuals, DBH distribution and similarity analysis were executed.

Forest Structure in Relation to Altitude and Part of Slope in the Mansugol Valley at Woraksan National Park (월악산국립공원 만수골 계곡부의 해발고와 사면부위에 따른 산림구조)

  • Park In-Hyeop;Jang Jeong-Jae;Kim Kye-Seon
    • Korean Journal of Environment and Ecology
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    • v.19 no.2
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    • pp.99-105
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    • 2005
  • The Mansugol valley forest in Woraksan National Park was studied to investigate forest structure in relation to altitude and part of the slope. Forty eight quadrats were set up in the valley forest along altitude of 380m to 915m and part of the slope, and vegetation analysis for the woody species in the tree and subtree layers were carried out. With increasing elevation belt, tree density and basal area of the tree layer decreased while basal area of the subtree layer increased. As elevation increased, the importance percentages of Quercus mongolica, Fraxinus rhynchophylla, Lindera obtusiloba and Acer mono increased while those of Pinus densiflora, Quercus variablias Quercus serrata and Styrax obassia decreased. Species diversities of the elevation belts including the top of the valley ranged from 0.351 to 0.903, and those of the parts of the slope ranged from 0.780 to 1.064. The range of similarity indices between elevation belts were $36.0\~67.3\%$, and the range of similarity indices between parts of the slope were $66.8\~75.1\%$. According to importance percentage and cluster analysis, the studied valley forest was classified into three forest communities of Pinus densiflora-Quecus species community in the low elevation belt and the middle part of the slope at the middle elevation belt, Quercus mongolica-broad-leaved tree species community in the high elevation belt and the lower and upper parts at the middle elevation belt, and Quercus mongolica community in the top area of the valley. The importace percentage of Quercus mongolica was significantly and negatively correlated with those of Pinus desiflora and Quercus serrata. There were significantly positive correlation among Pinus densiflora, Quercuss serata and Rhus trichocarpa.

A Dynamic Recommendation System Using User Log Analysis and Document Similarity in Clusters (사용자 로그 분석과 클러스터 내의 문서 유사도를 이용한 동적 추천 시스템)

  • 김진수;김태용;최준혁;임기욱;이정현
    • Journal of KIISE:Software and Applications
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    • v.31 no.5
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    • pp.586-594
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    • 2004
  • Because web documents become creation and disappearance rapidly, users require the recommend system that offers users to browse the web document conveniently and correctly. One largely untapped source of knowledge about large data collections is contained in the cumulative experiences of individuals finding useful information in the collection. Recommendation systems attempt to extract such useful information by capturing and mining one or more measures of the usefulness of the data. The existing Information Filtering system has the shortcoming that it must have user's profile. And Collaborative Filtering system has the shortcoming that users have to rate each web document first and in high-quantity, low-quality environments, users may cover only a tiny percentage of documents available. And dynamic recommendation system using the user browsing pattern also provides users with unrelated web documents. This paper classifies these web documents using the similarity between the web documents under the web document type and extracts the user browsing sequential pattern DB using the users' session information based on the web server log file. When user approaches the web document, the proposed Dynamic recommendation system recommends Top N-associated web documents set that has high similarity between current web document and other web documents and recommends set that has sequential specificity using the extracted informations and users' session information.

Identification and Characterization of the Causal Organism of Gummy Stem Blight in the Muskmelon (Cucumis melo L.)

  • Choi, In-Young;Choi, Jang-Nam;Choi, Dong-Chil;Sharma, Praveen Kumar;Lee, Wang-Hyu
    • Mycobiology
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    • v.38 no.3
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    • pp.166-170
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    • 2010
  • Gummy stem blight is a major foliar disease of muskmelon (Cucumis melo L.). In this study, morphological characteristics and rDNA internal transcribed spacer (ITS) sequences were analyzed to identify the causal organism of this disease. Morphological examination of the Jeonbuk isolate revealed that the percentage of monoseptal conidia ranged from 0% to 10%, and the average length $\times$ width of the conidia was 70 ($\pm$ 0.96) $\times$ 32.0 ($\pm$ 0.15) ${\mu}m$ on potato dextrose agar. The BLAST analysis showed nucleotide gaps of 1/494, 2/492, and 1/478 with identities of 485/492 (98%), 492/494 (99%), 491/494 (99%), and 476/478 (99%). The similarity in sequence identity between the rDNA ITS region of the Jeonbuk isolate and other Didymella bryoniae from BLAST searches of GenBank was 100% and was 95.0% within the group. Nucleotide sequences of the rDNA ITS region from pure culture ranged from 98.2% to 99.8%. Phylogenetic analysis with related species of D. bryoniae revealed that D. bryoniae is a monophyletic group distinguishable from other Didymella spp., including Ascochyta pinodes, Mycosphaerella pinodes, M. zeae-maydis, D. pinodes, D. applanata, D. exigua, D. rabiei, D. lentis, D. fabae, and D. vitalbina. Phylogenetic analysis, based on rDNA ITS sequence, clearly distinguished D. bryoniae and Didymella spp. from the 10 other species studied. This study identified the Jeonbuk isolate to be D. bryoniae.

Spatio-temporal Variation of Fish Communities in Open Estuary, Seomjin River Estuary and Gwangyang Bay Coast (열린 하구인 섬진강 하구 및 광양만 연안 어류 군집의 시공간적 변화)

  • Sun Ho Lee;Won-Seok Kim;Jae-Won Park;Hyunbin Jo;Wan-Ok Lee;Tae Sik Yu;Hyo Gyeom Kim;Chang Woo Ji;Ihn-Sil Kwak
    • Korean Journal of Ecology and Environment
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    • v.55 no.2
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    • pp.132-144
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    • 2022
  • The fish community in the Seomjin River-Seomjin River Estuary-Gwangyang Bay coast continuum was investigated three times from March 2019 to October 2019. The collected species at the eight sites during the survey period were 49 species belonging to 31 families, including two endangered species. According to Bray-Curtis similarities, observations were divided into four groups based on the fish community composition; two groups (group 1, 2) and two uncategorized groups (group 3, 4). ANOSIM based on spatial and temporal groupings indicated that the spatial differences in fish communities (R=0.398, P=0.001) were relatively more important than the temporal differences (analysis of similarities, R=0.273, P=0.002). In particular, there were significant differences between groups 1 and 2 (analysis of similarities, R=0.556, P=0.001), and similarity percentage analysis revealed that Argyrosomus argentatus (9.4%), Favonigobius gymnauchen (6.9%) and Konosirus punctatus (5.9%) contributed to these differences of fish assemblages for each group. The fish fauna distributed in the Seomjin River-Gwangyang Bay ecosystem were spatially divided and the number of species and number of individuals showed seasonal differences. This study could be a basis for understanding changes in the fish community and implementing conservation and management strategies on major species within a continuous environment of the river-estuary-ocean continuum.

Molecular detection and characterization of ovine herpesvirus-2 using heminested PCR in Pakistan

  • Riaz, Aayesha;Dry, Inga;Dalziel, Robert;Rehman, Saif Ur;Shah, Muhammad Ali;Akhtar, Hafiz Muhammad Naeem;Yousaf, Arfan;Baig, Ruqia
    • Journal of Veterinary Science
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    • v.22 no.4
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    • pp.51.1-51.10
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    • 2021
  • Background: Malignant catarrhal fever (MCF) is a highly fatal lymphoproliferative disease of cattle, deer, bison, water buffalo, and pigs caused by the gamma-herpesviruses alcelaphine herpesvirus-1 (AlHV-1) and ovine herpesvirus-2 (OvHV-2). Objectives: This study aimed to determine the prevalence of OvHV-2 in sheep, goats, cattle, and buffalo in Rawalpindi and Islamabad, Pakistan, by applying molecular and phylogenetic methods. Methods: Blood samples were aspirated from sheep (n = 54), goat (n = 50), cattle (n = 46) and buffalo (n= 50) at a slaughterhouse and several farms. The samples were subjected to heminested polymerase chain reaction (PCR), followed by sequencing and phylogenetic analysis of the OvHV-2 POL gene and the OvHV-2 ORF75 tegument protein gene. Results: The highest percentage of MCF positive samples was in sheep (13%), whereas goat, cattle, and buffalo had lower positive percentages, 11%, 9%, and 6.5%, respectively. Four OvHV-2-positive PCR products obtained from sheep samples were sequenced. The sequences obtained were submitted to the NCBI GenBank database (MK852173 for the POL gene; MK840962, MK852171, and MK852172 for the ORF75 tegument protein gene). Phylogenetic analysis revealed a close similarity of study sequences with those of worldwide samples. Conclusions: This study is the first cross-sectional study on the prevalence and molecular detection of OvHV-2 in apparently healthy cattle and buffalo that could be carrying OvHV-2 acquired from OvHV-2-positive sheep and goats. The results indicate that OvHV-2 is circulating in Pakistan. Further studies are needed to characterize OvHV-2 and elucidate further its prevalence.

Studies on the Construction of Mutant Diversity Pool (MDP) lines, and their Genomic Characterization in Soybean

  • Dong-Gun Kim;Sang Hoon Kim;Chang-Hyu Bae;Soon-Jae Kwon
    • Proceedings of the Plant Resources Society of Korea Conference
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    • 2021.04a
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    • pp.9-9
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    • 2021
  • Mutation breeding is useful for improving agronomic characteristics of various crops. In this study, we constructed soybean Mutant Diversity Pool (MDP) from 1,695 gamma-irradiated mutants through two selection phases over M1 to M12 generations; we selected 523 mutant lines exhibiting at least 30% superior agricultural characteristics, and, second, we eliminated redundant morphological phenotypes in the M12 generation. Finally, we constructed 208 MDP lines and investigated 11 agronomic traits. We then assessed the genetic diversity and inter-relationships of these MDP lines using target region amplification polymorphism (TRAP) markers. Among the different TRAP primer combinations, polymorphism levels and PIC values averaged 59.71% and 0.15, respectively. Dendrogram and population structure analyses divided the MDP lines into four major groups. According to an analysis of AMOVA, the percentage of inter-population variation among mutants was 11.320 (20.6%), whereas mutant inter-population variation ranged from 0.231 (0.4%) to 14.324 (26.1%). Overall, the genetic similarity of each cultivar and its mutants were higher than within other mutant populations. In an analysis of the genome-wide association study (GWAS) using based on the genotyping-by-sequencing (GBS), we detected 66 SNPs located on 13 different chromosomes were found to be highly associated with four agronomic traits: days of flowering (33 SNPs), flower color (16 SNPs), node number (6 SNPs), and seed coat color (11 SNPs). These results are consistent with those previously reported for other genetic resource populations, including natural accessions and recombinant inbred line. Our observations suggest that genomic changes in mutant individuals induced by gamma rays occurred at the same loci as those of natural soybean population. This study has demonstrated that the integration of GBS and GWAS can serve as a powerful complementary approach to gamma-ray mutation for the dissection of complex traits in soybean.

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