• 제목/요약/키워드: s-sequences

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Hall's Sextic Residue 시퀀스 및 기타 시퀀스의 Trace 함수에 의한 표현

  • 이환근;노종선;정하봉;양경철;송홍엽
    • 한국통신학회논문지
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    • 제22권6호
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    • pp.1273-1278
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    • 1997
  • Pseudonoise sequences of period 2$^{m}$ -1 with idel autocorrelation have been researched such as m-sequences, GMW sequences, Legendre sequences, and extended sequences. The m-sequences, the GMW sequences, the Legendre sequences, and the extended sequences are best described in terms of the trace function by previous works. Besides, there are Hall's sextic residue sequences and miscellaneous sequences with ideal autocorrelation, whose general constructions are not known so far. However, are are no explicit descripton of the Hall's sextic residue sequences and the miscellaneous sequences in terms of the trace function. In this paper, the Hall's sextic residue sequences and the miscellaneous sequences of period 2$^{m}$ -1 are expressed as a sum of trace functions. The miscellaneous sequences with ideal autocorrelation, which are newly found by computer search, are also expressed as a sum of trace functions.

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두 개의 m-수열에 의해 생성된 새로운 비선형 이진수열군 (A New Family of Nonlinear Binary Sequences Generated by Two m-Sequences)

  • 최언숙;조성진;김한두;권숙희;권민정;김진경
    • 한국정보통신학회:학술대회논문집
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    • 한국정보통신학회 2012년도 춘계학술대회
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    • pp.228-231
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    • 2012
  • $n=2k$이고, $2s$$k$의 약수이며 홀수인 $i$에 대하여 주기가 $2^n-1$$m$-수열과 새로운 decimation $d=2^{k-1}(2^{s+1}-2^k+2^{k(i+1)}-2^{ki}-1)/(2^s-1)$인에 의해 생성된 수열의 합으로 생성된 새로운 이진수열군에 대하여 그 상관관계를 분석한다. 제안된 수열은 Rosendahl의 수열과 Dobbertin의 수열을 포함하는 확장된 수열이다.

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Mitochondrial DNA Sequence Variability of Spirometra Species in Asian Countries

  • Jeon, Hyeong-Kyu;Eom, Keeseon S.
    • Parasites, Hosts and Diseases
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    • 제57권5호
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    • pp.481-487
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    • 2019
  • Mitochondrial DNA sequence variability of Spirometra erinaceieuropaei in GenBank was observed by reinvestigation of mitochondrial cox1 and cytb sequences. The DNA sequences were analyzed in this study, comprising complete DNA sequences of cox1 (n=239) and cytb (n=213) genes. The 10 complete mitochondrial DNA sequences of Spirometra species were compared with those of Korea, China and Japan. The sequences were analyzed for nucleotide composition, conserved sites, variable sites, singleton sites and parsimony-informative sites. Phylogenetic analyses was done using neighbor joining, maximum parsimony, Bayesian inference and maximum-likelihood on cox1 and cytb sequences of Spirometra species. These polymorphic sites identified 148 (cox1) and 83 (cytb) haplotypes within 239 and 213 isolates from 3 Asian countries. Phylogenetic tree topologies were presented high-level confidence values for the 2 major branches of 2 Spirometra species containing S. erinaceieuropaei and S. decipiens, and S. decipiens sub-clades including all sequences registered as S. erinaceieuropaei in cox1 and cytb genes. These results indicated that mitochondrial haplotypes of S. erinaceieuropaei and S. decipiens were found in the 3 Asian countries.

A Phylogenetic Study of Scirpus planiculmis F. Schm. (Cyperaceae) Based on ITS1 Sequences of Nuclear Ribosomal DNA

  • Jang, Wol-Suk;Kang, Hye-Sook;Han, In-Seop;Lee, Sun-Hee
    • 농업생명과학연구
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    • 제45권6호
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    • pp.1-7
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    • 2011
  • This work was performed to confirm the molecular discrimination through the nrITS1 sequences among 3 taxa of Scirpus L. sensu lato (s.l.) species. S. planiculmis represented only 2 base sequence variations with S. maritimus in spite that they showed different morphological features. The nucleotide sequences of the ITS1 region from S. planiculmis were shown to have 99.1% homology with S. maritimus and 60.4% homology with S. triqueter. Although the morphology of S. planiculmis is similar with S. triqueter, molecular basis of the size and sequences on ITS1 region were shown to have distinctive differences. For divergency investigation on same sites and metapopulation, sequencing was conducted on ITS1 region with partial 5.8S and 18S regions. All plants of each species collected at the same site had identical band size pattern and sequences. Intraspecific molecular divergency was not identified in spite that these species live in different wetland sites. The ITS1 sequences described here provided a powerful genetic tool for phylogenetic studies which was difficult by morphological identification as high rate of morphological plasticity.

Diagnosis of Rotator Cuff Tears with Non-Arthrographic MR Imaging: 3D Fat-Suppressed Isotropic Intermediate-Weighted Turbo Spin-Echo Sequence versus Conventional 2D Sequences at 3T

  • Hong, Won Sun;Jee, Won-Hee;Lee, So-Yeon;Chun, Chang-Woo;Jung, Joon-Yong;Kim, Yang-Soo
    • Investigative Magnetic Resonance Imaging
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    • 제22권4호
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    • pp.229-239
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    • 2018
  • Purpose: To assess the diagnostic performance in detecting rotator cuff tears at 3T of non-arthrographic shoulder magnetic resonance imaging (MRI) using 3D isotropic turbo spin-echo (TSE-SPACE) sequence as compared with 2D sequences. Materials and Methods: Seventy-four patients who were arthroscopically confirmed to have underwent non-arthrographic shoulder MRI with 2D sequences and TSE-SPACE were included. Three independent readers retrospectively scored supraspinatus and infraspinatus tendon (SST-IST) and subscapularis tendon (SCT) tears on 2D sequences and TSE-SPACE. Results: The mean sensitivity, specificity, and accuracy of the three readers were 95%, 100%, and 95% on TSE-SPACE and 99%, 93%, and 98% on 2D sequences for detecting SST-IST tears, respectively, whereas those were 87%, 49%, and 68% on TSESPACE and 88%, 66%, and 77% on 2D sequences for detecting SCT tears, respectively. There was no statistical difference between the two sequences, except for in the specificity of one reader for detecting SCT tears. The mean AUCs of the three readers on TSE-SPACE and 2D sequences were 0.96 and 0.98 for detecting SST-IST tears, respectively, which were not significantly different, while those were 0.71 and 0.82 for detecting SCT tears, respectively, which were significantly different (P < 0.05). Conclusion: TSE-SPACE may have accuracy and reliability comparable to conventional 2D sequences for SST-IST tears at non-arthrographic 3T shoulder MRI, whereas TSE-SPACE was less reliable than conventional 2D sequences for detecting SCT tears.

Vibrio 속 16S rRNA 유전자 염기서열의 이질성 분석 (Heterogeneity Analysis of the 16S rRNA Gene Sequences of the Genus Vibrio)

  • 기장서
    • 미생물학회지
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    • 제45권4호
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    • pp.430-434
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    • 2009
  • 세균 16S rRNA 유전자 염기서열은 분자계통분류, 진화역사 규명, 미생물 검출 등 다양한 목적으로 이용되어 왔다. 세균 제놈(genome)은 multiple rRNA 오페론을 갖고 있으며, 이들 유전자 염기서열은 일부 변이가 있는 것으로 알려져 있다. 본 연구에서는 Vibrio 속의 16S rRNA 유전자 염기서열을 이용하여 세포 내 16S rRNA의 이질성을 규명하였다. 분석은 GenBank 자료 중에서 제놈 염기서열 annotation이 완료된 V. cholerae, V. harveyi, V. parahaemolyticus, V. splendidus, V. vulnificus를 이용하여 실시하였다. Vibrio 속은 1번 염색체에 7~10개의 16S rRNA 유전자 copy를 갖고 있으며, 이들의 세포 내 유전자 변이는 0.9% 이하 상이성(99.1%이상 DNA 상동성)을 보였다. 2번 염색체에서는 16S rRNA 유전자가 1개 이하로 존재하였다. 유전체내 16S rRNA 유전형은 최소 5개(V. vulnificus #CMCP6)에서 최대 8개(V. parahaemolyticus #RIMD 2210633, V. harveyi #ATCC BAA-1116)로 조사되었다. 본 결과는 Vibrio 속의 16S rRNA 유전자 염기서열이 높은 이질성을 갖는 것을 제시해 준다.

18S Ribosomal DNA Sequences Provide Insight into the Phylogeny of Patellogastropod Limpets (Mollusca: Gastropoda)

  • Yoon, Sook Hee;Kim, Won
    • Molecules and Cells
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    • 제23권1호
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    • pp.64-71
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    • 2007
  • To investigate the phylogeny of Patellogastropoda, the complete 18S rDNA sequences of nine patellogastropod limpets Cymbula canescens (Gmelin, 1791), Helcion dunkeri (Krauss, 1848), Patella rustica Linnaeus, 1758, Cellana toreuma (Reeve, 1855), Cellana nigrolineata (Reeve, 1854), Nacella magellanica Gmelin, 1791, Nipponacmea concinna (Lischke, 1870), Niveotectura pallida (Gould, 1859), and Lottia dorsuosa Gould, 1859 were determined. These sequences were then analyzed along with the published 18S rDNA sequences of 35 gastropods, one bivalve, and one chiton species. Phylogenetic trees were constructed by maximum parsimony, maximum likelihood, and Bayesian inference. The results of our 18S rDNA sequence analysis strongly support the monophyly of Patellogastropoda and the existence of three subgroups. Of these, two subgroups, the Patelloidea and Acmaeoidea, are closely related, with branching patterns that can be summarized as [(Cymbula + Helcion) + Patella] and [(Nipponacmea + Lottia) + Niveotectura]. The remaining subgroup, Nacelloidea, emerges as basal and paraphyletic, while its genus Cellana is monophyletic. Our analysis also indicates that the Patellogastropoda have a sister relationship with the order Cocculiniformia within the Gastropoda.