• Title/Summary/Keyword: rural clusters

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Identification of Heterosis QTLs for Yield and Yield-Related Traits in Indica-Japonica Recombinant Inbred Lines of Rice (Oryza sativa L.)

  • Kim, Chang-Kug;Chu, Sang-Ho;Park, Han Yong;Seo, Jeonghwan;Kim, Backki;Lee, Gileung;Koh, Hee-Jong;Chin, Joong Hyoun
    • Plant Breeding and Biotechnology
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    • v.5 no.4
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    • pp.371-389
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    • 2017
  • Supplying sufficient rice to growing populations is a global challenge. Hybrid indica rice varieties exploiting heterosis have increased yields, but inter-subspecific crosses between indica and japonica varieties are hampered by sterility. Examination and genetic understanding of yield heterosis in indica/japonica crosses addressing yield barriers are basic requirements. In this study, QTLs for heterosis of yield traits were identified in indica-japonica recombinant inbred lines (RILs) using a total of 178 RILs originating from Dasanbyeo (indica) ${\times}$ TR22183 (japonica) (DT-RILs) and their backcrossed populations. Nine of sixty-six major quantitative trait loci (QTLs) identified in DT-RILs exhibited heterosis. Heterosis QTLs clustered with other traits on chromosomes 1, 4, and 8, and clusters were conserved between different RILs. The clusters contained several known yield enhancement genes/QTLs. Specific heterotic allele combinations contributed to four major heterosis QTLs, particularly for panicle and spikelet number traits. Heterosis for yield and yield-related traits was explained by the harmonized effects of overdominance, dominance, and epistatic interactions in inter-subspecific breeding populations.

A study on the determination of the number of mobility cluster (적정 이동군집수 결정에 관한 연구)

  • ;Ham, Sung Hun
    • Journal of the Korean Geographical Society
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    • v.30 no.2
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    • pp.120-131
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    • 1995
  • To analyze mobility patterns, this study used three Constraint (Capability Constraint, Coupling Constraint, Authority Constraint) models which were proposed in Dr. Hagerstrand's Time-space theory. This paper shows that three constraint models have some effects upon mobility by age. In this study, Capability Constraint means a certain special constraint that is what we can't do during proceeding basic natural urges like sleep, fare, etc. Coupling constraint is a physical one. Each person limits the action range for staying on a special place in special time. For instance, students have to stay in school so that they have mobility constraints. Authority Constraint is a social one. When we use urban facilities or traffic, we may be controlled by mobility sphere by an agreement or a social position. It is social agreement that the opening hour of a store, the time table of mass-transportation and a social positional control that the personal income, the standard of education. In this study it has been in a process of determination of the cluster number that degree of influences a social constraint to mobility. Considering the mobility constraint of characteristics of space divides urban and rural, people in urban area have higher mobility rate than in rural area. Resuets of determination of the cluster, show similar mobility pattern. People in urban area are connected verity of mobility which related to urban space structures with determination of cluste-number. That is to say, mobility patterns can be changed by space charactcristics. Constraints by sex and age are also social constraints and they are influenced by mobility patterns. For instance, females at the age of twenties have similar mobility pattern to the same age male but they have sudden changes after thirty's age. Male entertains a similar pattern without restriction of age. That is to say, management by sex as a social constraint affects mobility. To establish more realistic traffie policy, mobility formation should be reflected to the space in a view of social-behavioral science. To embody this, some problems should be investigated as follows. 1. As a problem of methodology, if sufficient samples ensured, we could subdivide clusters and could open up a new method of analyzing the mobility clusters by using the neuro-network. 2. Extracting actions connected with mobility and finding life cycle which is classified by daily cluste-characteristics, suitable counterproposal could be presented to the traific policy.

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Genetic Differentiation of Pseudomonas syringae Pathovar tomato from Other P. syringae Pathovars using REP-PCR and URP-PCR

  • Cho, Min-Seok;Park, Dong-Suk;Yun, Yeo-Hong;Kim, Seong-Hwan;Shim, Myung-Yong;Choi, Chang-Won;Kim, Young-Shick
    • The Plant Pathology Journal
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    • v.28 no.1
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    • pp.60-67
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    • 2012
  • For the genetic differentiation of $Pseudomonas$ $syringae$ pathovar $tomato$, a total of 51 $P.$ $syringae$ pv. strains infecting 33 different host plants were analyzed using repetitive element PCR(REP-PCR) and universal rice primer PCR(URP-PCR). The entire DNA fingerprint profiles were analyzed using unweighted pair-group method with arithmetic averages (UPGMA). The 51 $P.$ $syringae$ pv. strains could be divided into five clusters based on 65% similarity by Rep-PCR using BOX, ERIC, and REP primers. $P.$ $syringae$ pv. $tomato$ cluster was well separated from other 31 $P.$ $syringae$ pathovars. $P.$ $syringae$ pv. $tomato$ cluster included only $P.$ $syringae$ pv. $maculicola$ and $P.$ $syringae$ pv. $tomato$. $P.$ $syringae$ pv. $tomato$ strains could be divided into two genetic groups. Meanwhile, the Pseudomonas pv. strains could be divided into four clusters based on 63% similarity by URP-PCR using 2F, 9F, and 17R primers. $P.$ $syringae$ pv. $tomato$ cluster was also well separated from 30 other $P.$ $syringae$ pathovars. In this case, $P.$ $syringae$ pv. $tomato$ cluster included $P.$ $syringae$ pv. $maculicola$, $P.$ $syringae$ pv. $berberidi$, and $P.$ $syringae$ pv. $tomato$. $P.$ $syringae$ pv. $tomato$ strains was also separated into two genetic groups by URP-PCR analysis. Overall, our work revealed that $P.$ $syringae$ pv. $tomato$ can be genetically differentiated from other $P.$ $syringae$ pathovars by the DNA fingerprint profiles of REP-PCR and URP-PCR. We first report that there are two genetically diverged groups in $P.$ $syringae$ pv. $tomato$ strains.

Analysis of Urban Planning Facility Service Area according to Bus Passenger Traffic in Jinju (진주시 버스 이용객 통행에 따른 도시계획시설 서비스 권역 분석)

  • Bae, Su-Min;Lee, So-Yeong;Joo, Hee-Sun
    • Journal of the Korean Institute of Rural Architecture
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    • v.24 no.4
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    • pp.1-8
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    • 2022
  • This study aims to investigate the gap in accessibility to urban planning facilities between living spheres in local small and medium-sized cities. In this study, OD data between administrative dongs of public transportation users was constructed to analyze the living shpere, and community analysis was conducted based on cohesion between data. As a result of the analysis, it was confirmed that a total of 10 clusters (mid-living areas) were formed, and the topographical difference between the 11 middle living areas established in the existing Jinju City Basic Plan and the single living areas were actively exchanged to form a community with other administrative dongs. Next, the analysis of the service area of urban planning facilities for mid-living areas was conducted based on the road network. As a result of analyzing the area accessible within 5, 10, and 15 minutes, educational facilities, public facilities, cultural facilities, tourism, and green facilities could be reached within 15 minutes in most mid-living areas. On the other hand, there were many areas where access to transportation facilities, medical facilities, and cultural facilities was difficult within 15 minutes. In particular, the accessibility of the outer living area and the central living area were different. To improve the quality of life of citizens, using urban planning facilities in Jinju-si and establishing related plans in urban basic plans, it is necessary to conduct a study on service areas through network analysis.

Breeding of New Ever-bearing Strawberry 'Miha' with High Hardness (고경도 사계성 딸기 '미하' 육성)

  • Jong Nam Lee;Jong Taek Suh;Su Jeong Kim;Hwang Bae Shon;Ki Deog Kim;Hye Jin Kim;Mi Ja Choi;Yul Ho Kim;Su Young Hong
    • Korean Journal of Plant Resources
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    • v.37 no.1
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    • pp.87-92
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    • 2024
  • 'Miha' is a new strawberry (Fragaria x ananassa Duch.) cultivar, which was released by the Highland Agriculture Research Institute in 2019. The 'Miha' cultivar originates from a 2014 cross between 'Monterey' and 'Saebong No. 3', both of which exhibited excellent ever-bearing characteristics, including continuous flowering and large fruits under long-day and high temperature conditions. This new cultivar was initially named 'Saebong No. 12' after examining its characteristics and productivity during summer cultivation between 2015 and 2019. After regional adaptability tests, 'Miha' was selected from 'Saebong No. 12' as an elite cultivar. The general characteristics of 'Miha' include intermediate, elliptic leaves, and strong growth. The fruits are conical and of a dark-red color. The number of leaves of 'Miha' was 21.9, which was 6.2 fewer than that of the control cultivar, 'Goha' with 28.1. The number of flower clusters of 'Miha' was similar to that of 'Goha'. The average fruit weight of 'Miha' was 13.4 g, which was 4.3 g heavier than that of 'Goha'. The fruit hardness of 'Miha' was 36.2 g·mm-2, which was 10.1 g·mm-2 harder than that of 'Goha'. The marketable yield of 'Miha' was 37,393 kg·ha-1, 156% more than that of 'Goha' with 23,970 kg·ha-1. Therefore, the new cultivar of ever-bearing strawberry 'Miha' is expected to be very popular in the export or bakery market because it is hard.

Breeding of New Ever-bearing Strawberry 'Jinha' with High Soluble Solid Content (당도가 높은 사계성 딸기 '진하' 육성)

  • Jong Nam Lee;Jong Taek Suh;Su Jeong Kim;Ki Deog Kim;Hye Jin Kim;Mi Za Choi;Bok Rye Yun;Hwang Bae Shon;Yul Ho Kim;Su Young Hong
    • Korean Journal of Plant Resources
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    • v.37 no.4
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    • pp.386-391
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    • 2024
  • 'Jinha' is a new strawberry (Fragaria × ananassa Duch.) cultivar, which was released by the Highland Agriculture Research Institute in 2019. The 'Jinha' cultivar originates from a 2011 cross between 'Albion' and 'Goha,' both of which exhibited excellent ever-bearing characteristics, including continuous flowering and large fruits under long-day and high temperature conditions. This new cultivar was initially named 'Saebong No. 11' after examining its characteristics and productivity during summer cultivation between 2012 and 2016. After regional adaptability tests, 'Jinha' was selected from 'Saebong No. 11' as an elite cultivar. The general characteristics of 'Jinha' include intermediate, elliptic leaves, and medium growth. The fruits are conical and of a red color. The plant height of 'Jinha' is simiar to that of the control variety, 'Flamenco', but it has a lot of number of leaves. The cluster length of 'Jinha' was 35.5 cm, 10.8 cm longer than 24.7 cm of the control variety. The number of flower clusters of 'Jinha' appeared 14.4, which was 4.1 more than that of 'Flamenco'. The average fruit weight of 'Jinha' was 10.1 g, which was 0.8 g heavier than that of 'Flamenco'. The soluble solid content of 'Jinha' was 10.2 °Brix, which was 2.0 °Brix higher than that of 'Flamenco'. The marketable yield of 'Jinha' was 25,931 kg·ha-1, 440% more than that of 'Flamenco' with 5,900 kg·ha-1. Therefore, the new cultivar of ever-bearing strawberry 'Jinha' is expected to be very popular in the export or bakery market because it is high soluble solid content and good shape.

A Leaf-Inhabiting Endophytic Bacterium, Rhodococcus sp. KB6, Enhances Sweet Potato Resistance to Black Rot Disease Caused by Ceratocystis fimbriata

  • Hong, Chi Eun;Jeong, Haeyoung;Jo, Sung Hee;Jeong, Jae Cheol;Kwon, Suk Yoon;An, Donghwan;Park, Jeong Mee
    • Journal of Microbiology and Biotechnology
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    • v.26 no.3
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    • pp.488-492
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    • 2016
  • Rhodococcus species have become increasingly important owing to their ability to degrade a wide range of toxic chemicals and produce bioactive compounds. Here, we report isolation of the Rhodococcus sp. KB6, which is a new leaf-inhabiting endophytic bacterium that suppresses black rot disease in sweet potato leaves. We determined the 7.0 Mb draft genome sequence of KB6 and have predicted 19 biosynthetic gene clusters for secondary metabolites, including heterobactins, which are a new class of siderophores. Notably, we showed the first internal colonization of host plants with Rhodococcus sp. KB6 and discuss its potential as a biocontrol agent for sustainable agriculture.

Drought Classification Method for Jeju Island using Standard Precipitation Index (표준강수지수를 활용한 제주도 가뭄의 공간적 분류 방법 연구)

  • Park, Jae-Kyu;Lee, Jun-ho;Yang, Sung-Kee;Kim, Min-Chul;Yang, Se-Chang
    • Journal of Environmental Science International
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    • v.25 no.11
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    • pp.1511-1519
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    • 2016
  • Jeju Island relies on subterranean water for over 98% of its water resources, and it is therefore necessary to continue to perform studies on drought due to climate changes. In this study, the representative standardized precipitation index (SPI) is classified by various criteria, and the spatial characteristics and applicability of drought in Jeju Island are evaluated from the results. As the result of calculating SPI of 4 weather stations (SPI 3, 6, 9, 12), SPI 12 was found to be relatively simple compared to SPI 6. Also, it was verified that the fluctuation of SPI was greater fot short-term data, and that long-term data was relatively more useful for judging extreme drought. Cluster analysis was performed using the K-means technique, with two variables extracted as the result of factor analysis, and the clustering was terminated with seven-time repeated calculations, and eventually two clusters were formed.

Comparison of 12 Isoflavone Profiles of Soybean (Glycine max (L.) Merrill) Seed Sprouts from Three Different Countries

  • Park, Soo-Yun;Kim, Jae Kwang;Kim, Eun-Hye;Kim, Seung-Hyun;Prabakaran, Mayakrishnan;Chung, Ill-Min
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.63 no.4
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    • pp.360-377
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    • 2018
  • The levels of 12 isoflavones were measured in soybean (Glycine max (L.) Merrill) sprouts of 68 genetic varieties from three countries (China, Japan, and Korea). The isoflavone profile differences were analyzed using data mining methods. A principal component analysis (PCA) revealed that the CSRV021 variety was separated from the others by the first two principal components. This variety appears to be most suited for functional food production due to its high isoflavone levels. Partial least squares discriminant analysis (PLS-DA) and orthogonal projections to latent structures discriminant analysis (OPLS-DA) showed that there are meaningful isoflavone compositional differences in samples that have different countries of origin. Hierarchical clustering analysis (HCA) of these phytochemicals resulted in clusters derived from closely related biochemical pathways. These results indicate the usefulness of metabolite profiling combined with chemometrics as a tool for assessing the quality of foods and identifying metabolic links in biological systems.

Cluster analysis of city-level carbon mitigation in South Korea

  • Zhuo Li
    • Journal of the Korea Society of Computer and Information
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    • v.28 no.7
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    • pp.189-198
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    • 2023
  • The phenomenon of climate change is deteriorating which increased heatwaves, typhoons and heavy snowfalls in recent years. Followed by the 25th United nations framework convention on climate change(COP25), the world countries have achieved a consensus on achieving carbon neutrality. City plays a crucial role in achieving carbon mitigation as well as economic development. Considering economic and environmental factors, we selected 63 cities in South Korea to analyze carbon emission situation by Elbow method and K-means clustering algorithm. The results reflected that cities in South Korea can be categorized into 6 clusters, which are technology-intensive cities, light-manufacturing intensive cities, central-innovation intensive cities, heavy-manufacturing intensive cities, service-intensive cities, rural and household-intensive cities. Specific suggestions are provided to improve city-level carbon mitigation development.