• 제목/요약/키워드: partial sequence

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16S rRNA 유전자의 일부 염기서열에 기초한 한국산 Microcystis의 계통 유연관계 (Phylogenetic Relationship of Microcystis (Cyanophyceae) Based on Partial 16S rRNA Gene Sequences in Korea)

  • 김종인;임종헌;이재완;이해복
    • ALGAE
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    • 제17권3호
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    • pp.153-159
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    • 2002
  • Partial 16S rRNA gene sequences of seven cyanophycean strains from the National Instiute of Environmental Research of Korea - Microcystis aeruginosa, M. aeruginosa f. aeruginosa, M. ichthyoblade, M. viridis, Anabaena flos-aquae, and Oscillatoria sancta - were analyzed and the phylogenetic relationship of Microcystis among Cyanophyceae were evaluated. Based on sequence analysis results, Microcystis is monophyletic, the clade of which supported 100% bootstrap tress, and distinguished clearly from the other taxa. Therefore, the partial 16S rRNA gene sequences can be a useful and efficient tool for distinguishing Microcystis from other cyanophycean without axenic culture or cloning.

SYSTEMATIC APPROXIMATION OF THREE DIMENSIONAL FRACTIONAL PARTIAL DIFFERENTIAL EQUATIONS IN FLUID MECHANICS

  • KHAN, FIRDOUS;GHADLE, KIRTIWANT P.
    • Journal of the Korean Society for Industrial and Applied Mathematics
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    • 제23권3호
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    • pp.253-266
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    • 2019
  • In this article, a systematic solution based on the sequence of expansion method is planned to solve the time-fractional diffusion equation, time-fractional telegraphic equation and time-fractional wave equation in three dimensions using a current and valid approximate method, namely the ADM, VIM, and the NIM subject to the estimate initial condition. By using these three methods it is likely to find the exact solutions or a nearby approximate solution of fractional partial differential equations. The exactness, efficiency, and convergence of the method are demonstrated through the three numerical examples.

Morphological and Molecular Characterization of Pseudocercospora chionanthi-retusi Causing Leaf Spot on Chionanthus retusus in Korea

  • Choi, In-Young;Abasova, Lamiya;Choi, Joon-Ho;Shin, Hyeon-Dong
    • 식물병연구
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    • 제28권2호
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    • pp.57-60
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    • 2022
  • Leaves of Chionanthus retusus were found to be damaged by leaf spot disease associated with a fungus in Iksan, Korea. Leaf spots were angular to irregular, vein-limited, scattered, 1-8 mm diameter, brownish-gray to dark brown when dry, with heavy fructification. The pathogen causes premature defoliation of C. retusus plant and was identified as Pseudocercospora chionanthi-retusi based on morphological and molecular-phylogenetic analyses. The phylogenetic tree was constructed using multi-locus DNA sequence data of partial actin (actA), partial translation elongation factor 1-alfa (tef1), partial DNA-directed RNA polymerase II second largest subunit (rpb2) genes, and internal transcribed spacer regions. Current study provides detail morphological description of P. chionanthi-retusi on C. retusus in Korea, with supports of phylogenetic analysis and pathogenicity test.

Automatic Vowel Sequence Reproduction for a Talking Robot Based on PARCOR Coefficient Template Matching

  • Vo, Nhu Thanh;Sawada, Hideyuki
    • IEIE Transactions on Smart Processing and Computing
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    • 제5권3호
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    • pp.215-221
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    • 2016
  • This paper describes an automatic vowel sequence reproduction system for a talking robot built to reproduce the human voice based on the working behavior of the human articulatory system. A sound analysis system is developed to record a sentence spoken by a human (mainly vowel sequences in the Japanese language) and to then analyze that sentence to give the correct command packet so the talking robot can repeat it. An algorithm based on a short-time energy method is developed to separate and count sound phonemes. A matching template using partial correlation coefficients (PARCOR) is applied to detect a voice in the talking robot's database similar to the spoken voice. Combining the sound separation and counting the result with the detection of vowels in human speech, the talking robot can reproduce a vowel sequence similar to the one spoken by the human. Two tests to verify the working behavior of the robot are performed. The results of the tests indicate that the robot can repeat a sequence of vowels spoken by a human with an average success rate of more than 60%.

Cloning and molecular characterization of a new fungal xylanase gene from Sclerotinia sclerotiorum S2

  • Ellouze, Olfa Elleuch;Loukil, Sana;Marzouki, Mohamed Nejib
    • BMB Reports
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    • 제44권10호
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    • pp.653-658
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    • 2011
  • Sclerotinia sclerotiorum fungus has three endoxylanases induced by wheat bran. In the first part, a partial xylanase sequence gene (90 bp) was isolated by PCR corresponding to catalytic domains (${\beta}5$ and ${\beta}6$ strands of this protein). The high homology of this sequence with xylanase of Botryotinia fuckeliana has permitted in the second part to amplify the XYN1 gene. Sequence analysis of DNA and cDNA revealed an ORF of 746 bp interrupted by a 65 bp intron, thus encoding a predicted protein of 226 amino acids. The mature enzyme (20.06 kDa), is coded by 188 amino acid (pI 9.26). XYN1 belongs to G/11 glycosyl hydrolases family with a conserved catalytic domain containing $E_{86}$ and $E_{178}$ residues. Bioinformatics analysis revealed that there was no Asn-X-Ser/Thr motif required for N-linked glycosylation in the deduced sequence however, five O-glycosylation sites could intervene in the different folding of xylanses isoforms and in their secretary pathway.

OFDM 시스템에서의 GD방식과 Radix-2 DIF IFFT를 이용한 효과적인 PAPR 감소 방식 (A New PAPR Reduction Method in the OFDM System using GD and Radix-2 DIF IFFT)

  • 이선호;이해기;김성수
    • 한국콘텐츠학회논문지
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    • 제8권3호
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    • pp.41-46
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    • 2008
  • PAPR을 극복하기 위해서 SLM, PTS, SPW와 GD 같은 많은 연구들이 진행되었다. 본 논문에서는 PAPR을 줄이고 늘어난 계산량을 GD방식과 Radix-2 DIF IFFT 과정을 통하여 성능을 향상시키는 방법을 제시한다. 그리고 특정값을 설정하여 일정한 특정값을 만족하는 경우에는 제안된 방식의 일부분만으로 특정값을 만족하는 데이터 시퀀스를 선택하여 전송할 수 있고, 그렇지 못한 경우는 성능 향상을 위해 남은 부분을 수행하여 가장 적은 PAPR을 갖는 데이터 시퀀스를 선택하여 전송하는 방식이다.

A COMPLETE CONVERGENCE FOR LINEAR PROCESS UNDER ρ-MIXING ASSUMPTION

  • Kim, Hyun-Chull;Ryu, Dae-Hee
    • 충청수학회지
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    • 제23권1호
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    • pp.127-136
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    • 2010
  • For the maximum partial sum of linear process generated by a doubly infinite sequence of identically distributed $\rho$-mixing random variables with mean zeros, a complete convergence is obtained under suitable conditions.

An Invariance Principle of Uniform CLT for the Baker's Transformation

  • Jongsig Bae
    • Communications for Statistical Applications and Methods
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    • 제2권1호
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    • pp.194-200
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    • 1995
  • The baker's transformation is an ergodic transformation defined on the half open unit square. This paper considers the limiting begavior of the partial sum process of a martingale sequence constructed from the baker's transformation in the context of an invariance principle of a uniform central limit theorm.

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Linkage of the Kanamycin Resistance Gene with the Streptothricin Resistance Gene in Staphylococcus aureus SA2

  • Shin, Chul Kyo;Sung Hwan Im;Woo Koo Kim;Kyung Bo Moon
    • Journal of Microbiology and Biotechnology
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    • 제6권3호
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    • pp.219-220
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    • 1996
  • The pKH2 isolated from the multidrug-resistant Staphylococcus aureus SA2 is a 40.98-kb plasmid and mediates resistance to ampicillin, clindamycin, erythromycin, kanamycin, and streptomycin. The 3.4-kb HindIII fragment conferring kanamycin resistance was cloned from the pKH2 into pBluescriptII $KS^+$ and partial sequence determination of that fragment was carried out. Sequence analysis revealed that the kanamycin resistance gene which encoded aminoglycoside 3'-phosphotransferase was linked to the streptothricin resistance gene. But a nonsense mutation was found in the streptothricin resistance gene and this mutation resulted in a truncated protein of streptothricin acetyltransferase. Homology comparison with nucleotide sequence databases revealed that the 3.4-kb HindIII fragment of pKH2 had been derived not from S. aureus but from Gram-negative Campylobacter coli.

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