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High-Throughput Active Compound Discovery using Correlations between Activity and Mass Profiles

  • Park, Kyu-Hwan;Yoon, Kyo-Joong;Kwon, Kyung-Hoon;Kim, Hyun-Sik
    • Mass Spectrometry Letters
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    • v.1 no.1
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    • pp.13-16
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    • 2010
  • The active components in a plant extract can be represented as mass profiles. We introduce here a new, multi-compound discovery method known as Scaling of Correlations between Activity and Mass Profiles (SCAMP). In this method, a correlation coefficient is used to quantify similarities between the extract activity and mass profiles. The method was evaluated by first measuring the anti-oxidation activity of eleven fractions of an Astragali Radix extract using DPPH assays. Next, 15 T Fouriertransform ion cyclotron resonance (FT-ICR) MS was employed to generate mass profiles of the eleven fractions. A comparison of correlation coefficients indicated two compounds at m/z 285.076 and 286.076 that were strong antioxidants. Principal component analyses of these profiles yielded the same result. FT-ICR MS, which offers a mass resolving power of 500,000, was used to discern isotopic fine structures and indicated that the molecular formula corresponding to the peak at m/z 285.076 was $C_{16}H_{13}O_5$. SCAMP in combination with high-resolution MS can be applied to any type of mixture to study pharmacological activity and is a powerful tool for active compound discovery in plant extract studies.

Peroxynitrite-scavenging Constituents from the Brown Alga Sargassum thunbergii

  • Youngwan Seo;Lee, Hee-Jung;Park, Ki-Eui;Kim, You-Ah;Ahn, Jong-Woong;Yoo, Jong-Su;Lee, Burm-Jong
    • Biotechnology and Bioprocess Engineering:BBE
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    • v.9 no.3
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    • pp.212-216
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    • 2004
  • Peroxynitrite formation in vivo is implicated in numerous human diseases and there is considerable interest in the use of antioxidants and natural products for their treatment. The three components (1-3) isolated from Sargassum thunbergii as well as the organic solvent-soluble fractions and the aqueous layer of S. thunbergii were evaluated for their potential to scavenge authentic ONOO$\^$-/ and ONOO$\^$-/ derived from 3-morpholinosydnonimine (SIN-1). The antioxidant activity of the individual fractions was in the order of 85% aqueous (aq.) MeOH>n$\^$-/ BuOH>n-hexane>H$_2$O. The three known compounds, sargahydroquinoic acid (1), sargaquinoic acid (2) and sargachromenol (3) showed peroxynitrite-scavenging activities comparable to those of L-ascorbic acid and penicillamine. These results showed a possible antioxidant activity in major constituents of S. thunbergii.

Antioxidant Activity of Partially Purified Extracts Isolated from Bacillus polyfermenticus SCD Culture

  • Kim, Tae-Hoon;Lee, Na-Kyoung;Chang, Kyung-Hoon;Park, Eun-Ju;Choi, Shin-Yang;Paik, Hyun-Dong
    • Food Science and Biotechnology
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    • v.15 no.3
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    • pp.482-484
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    • 2006
  • The antioxidant activity of Bacillus polyfermenticus SCD was studied by partially purified culture extracts using various methods: ammonium sulfate precipitation, adsorption to Diaion HP-20 columns using polar solvents, and extraction using non-polar solvents. The 1,1-diphenyl-2-picyrylhydrazyl (DPPH) radical scavenging activity of these partially purified fractions was then investigated. The precipitate isolated using 75%-saturated ammonium sulfate was shown to contain about 77.2% DPPH radical scavenging activity. Using the Diaion HP-20 resin adsorption method, the fraction obtained using 60% ethanol and 60% methanol possessed 76.7 and 89.5% DPPH radical scavenging activity, respectively. Fractions obtained by extracting with the non-polar solvents 80 mg/mL chloroform, 80 mg/mL n-hexane, 80 mg/mL ethyl acetate, and 80 mg/mL butanol contained 68.4, 75.0, 70.7, and 87.5% DPPH radical scavenging activity, respectively. Further study is needed to characterize the antioxidant substance(s) released by B. polyfermenticus SCD cultures.

Comparing Organic Carbon Storage of Upper 15-cm Soils between Different Land Use Types in Korean Inland

  • Han, Kyung-Hwa;Cho, Hee-Rae;Lee, Jeong-Tae;Lee, Gye-Jun;Hong, Suk-Young;Zhang, Yong-Seon
    • Korean Journal of Soil Science and Fertilizer
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    • v.44 no.6
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    • pp.1314-1319
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    • 2011
  • This study was carried out to investigate the surface soil organic carbon fractions affecting by different land use types, including needle-leaf forest (FN), broad-leaf forest (FB), pasture, annual upland cropping land (upland), and paddy rice land (paddy). We chose seven regions across Korean inland, considering sea level altitude, and measured soil organic carbon content and physico-chemical properties such as bulk density at a depth of 0~15 cm using core samples in April for the each land use type. In addition, labile organic carbon fractions in soil including light fraction and hot water extractable carbon were investigated. From this study, organic carbon storage (Mg C per ha) in the upper 15-cm soils was highest in FB (37.8), and decreased in the order of pasture (29.1), FN (28.8), paddy (21.9), and upland crop (19.9). In forest, more than 20% of soil organic carbon existed as light fraction, the free organic matter. Hot-water extractable carbon contents of soils in five land use types were lower than 7% of their soil organic carbon content.

16S rDNA Analysis 9f Bacterial Diversity in Three Fractions of Cow Rumen

  • Cho, Soo-Jeong;Cho, Kye-Man;Shin, Eun-Chule;Lim, Woo-Jin;Hong, Su-Young;Choi, Byoung-Rock;Kang, Jung-Mi;Lee, Sun-Mi;Kim, Yong-Hee;Kim, Hoon;Yun, Han-Dae
    • Journal of Microbiology and Biotechnology
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    • v.16 no.1
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    • pp.92-101
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    • 2006
  • The bacterial diversity of the bovine rumen was examined using a PCR-based approach. 16S rDNA sequences were amplified and cloned from three fractions of rumen (solid, fluid, and epithelium) that are likely to represent different bacterial niches. A total of 113 clones were sequenced, and similarities to known l6S rDNA sequences were examined. About $47.8\%$ of the sequences had $90-97\%$ similarity to 16S rDNA database sequences. Furthermore, about $62.2\%$ of the sequences were $98-100\%$ similar to 16S rDNA database sequences. For the remaining $6.1\%$, the similarity was less than $90\%$. Phylogenetic analysis was also used to infer the makeup of the bacterial communities in the different rumen fractions. The Cytophaga-Flexibacter-Bacteroides group (CFB, $67.5\%$), low G+C Gram-positive bacteria (LGCGPB, $30\%$), and Proteobacteria $(2.5\%)$ were represented in the rumen fluid clone set; LGCGPB $(75.7\%)$, CFB$(10.8\%)$, Proteobacteria $(5.4\%)$, high G+C Gram-positive bacteria (HGCGPB, $5.4\%$), and Spirochaetes $(2.7\%)$ were represented in the rumen solid clone set; and the CFB group $(94.4\%)$ and LGCGPB $(5.6\%)$ were represented in the rumen epithelium clone set. These findings suggest that the rumen fluid, solid, and epithelium support different microbial populations that may play specific roles in rumen function.

Preparation of Surimi-like Materials Using Spent Hen

  • Kang, Geun-Ho;Kim, Sang-Ho;Na, Jae-Chun;Jang, Byoung-Gui;Kim, Ji-Hyuk;Yu, Dong-Jo;Lee, Duk-Soo;Lee, Sang-Jin;Joo, Seon-Tea;Park, Gu-Boo
    • Proceedings of the Korea Society of Poultry Science Conference
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    • 2006.11a
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    • pp.69-72
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    • 2006
  • To investigate the manufacturing methods of surimi-like materials (SLM) from breast muscle of spent hen, the muscles were diced, chopped and washed with distilled water or sodium chloride solution at 0.1, 0.5 and 1% level and then washed with distilled water to extract myofibrillar protein. When used only distilled water to extract myofibrillar protein, washing was repeated 3 times followed by homogenization and centrifugation of breast muscle after each washing (CM; conventional method). Whereas, to extract myofibrillar protein using sodium chloride solution had sufficient to do 2 times washing by distilled water after 1 time washing by sodium chloride followed by homogenization and centrifugation of breast muscle after each washing (NM; new method). The both batter and cooked SLM gel from NM had significantly (p<0.05) lower redness compared with CM. Again, SDS-PAGE with sarcoplasmic protein fractions showed that the bands of phosphorylase had increased staining intensity in NM compared with CM. These results indicated that the brightness was related to sarcoplasmic protein fractions. SDS-PAGE with myofibrillar protein showed that the bands of myosin had increased staining intensity in NM compared with CM. Data implied that myofibrillar protein extraction with sodium chloride solution had the better adaptability for the breast muscle of spent hen then the commonly used distilled water method.

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Antioxidative Activities of Solvent Extracts from Blueberry (Blueberry 추출물의 항산화 효과)

  • Kim, Tae-Choon;Bae, Kang-Soon;Kim, Il-Kwang;Chun, Hyun-Ja
    • Journal of Physiology & Pathology in Korean Medicine
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    • v.19 no.1
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    • pp.179-183
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    • 2005
  • Recent interest in the possible protective effects of dietary antioxidant compounds against human degenerative disease has prompted investigation of foods such as blueberries, which have a high antioxidant capacity. This study was performed to determine the antioxidative activity of methanol extract and solvent fractions from blueberry. Blueberry was extracted with methanol and then fractionated with n-hexane, EtOAc, BuOH and water to get active fractions. And their antioxidant capacities in each fraction were determined by using the DPPH and FRAP assay, and tyrosinase inhibitor. Ethyl acetate fraction of blueberry exhibited antioxidant capacity.

Antifungal Activity of Oak Vinegar Against Fungi Isolated from Organic Cultural Heritage (유기질 문화재로부터 분리한 곰팡이에 대한 참나무 목초액의 항진균 활성 조사)

  • Hong, Jin-Young;Jung, Mi-Hwa
    • 보존과학연구
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    • s.30
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    • pp.157-170
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    • 2009
  • We have evaluated the antifungal activities of oak vinegar to develop a natural biocide for organic cultural heritage. Fungi used in this study were screened from the cultural heritages, Kyujanggak and JanggyeongPanjeon and tested on organic substrates-degrading ability. In the results, 7 species of fungi have produced the extracellular enzymes to degrade CMC, xylan, lignin. Thus, we have used these seven species fungi to investigate the antifungal activity of oak vinegar in this study. In the result, the antifungal activity of oak vinegar indicated positive potencial. Especially, methylene chloride and ethylacetate fractions of the oak vinegar had high activities at the concentration of 5.0mg/disc. In these fractions, many different kinds of compounds such as phenolic and furfural, etc. were analyzed by GC-MS. The experiments indicated that the development of a biocide using natural extracts can have a potential to conserve of organic cultural heritages.

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Antioxidant Activity of the Seagrass Zostera japonica (애기거머리말의 항산화 활성)

  • Kwak, Myoung Kuk;Kim, Da Seul;Oh, Kwang-Suk;Seo, Youngwan
    • KSBB Journal
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    • v.29 no.4
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    • pp.271-277
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    • 2014
  • In this study, crude extract of the seagrass Zostera japonica, and its solvent-partitioned fractions were evaluated for their antioxidant activity. The crude extract was successively fractionated into n-hexane, 85% aqueous methanol (85% aq.MeOH), n-butanol (n-BuOH), and water fractions by liquid-liquid partition. These include DPPH radical scavenging, hydroxyl radical scavenging in HT-1080 cells, peroxynitrite scavenging, and protective effect on DNA damage caused by hydroxyl radicals generated. In all assays, except for DPPH radical, 85% aq.MeOH and n-BuOH fraction showed the strong antioxidant activity. These results suggest that Z. japonica may be used as a potential source of natural antioxidants for the development of cosmetic product or functional food in the future.

Antioxidant Activity of Fruits of Ligustrum japonicum (여정실의 항산화 활성)

  • Seo, Youngwan;Kim, Hojun
    • Ocean and Polar Research
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    • v.39 no.2
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    • pp.115-124
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    • 2017
  • The objective of this study is to evaluate the antioxidant activity of the fruits of Ligustrum japonicum. The crude extract was successively fractionated into n-hexane, 85% aqueous methanol (85% aq.MeOH), n-butanol (n-BuOH), and water fractions by means of solvent polarity. The crude extract and its solvent fractions were evaluated for their antioxidant effect by four different assay systems: scavenging power on peroxynitrite and intralcellular ROS produced in HT-1080 cells; DNA oxidation inhibition; ferric reducing antioxidant power (FRAP). The n-BuOH fraction exhibiting potent antioxidant activity was further purified by C18 silica gel column chromatography and RP-HPLC to give tyrosol (1) and salidroside (2). The structure of isolated compounds was determined by extensive 2 D NMR experiments such as $^1H$ COSY, NOESY, HSQC and HMBC as well as by comparison with the published spectral data.