• 제목/요약/키워드: double sequence

검색결과 306건 처리시간 0.024초

한국산 작약에서 분리한 바이로이드 유사 RNA 분자의 확인과 유전자 분석 (Detection and Genomic Analysis of Viroid-like RNA Molecules Isolated from Korean Peonies)

  • 정동수;김무인;이재열
    • 한국식물병리학회지
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    • 제13권2호
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    • pp.113-117
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    • 1997
  • Low moleuclar weight (LMW) RNAs were isolated form Korean peonies which expressed symptoms of stunt and epinasty. The LMW plant RNAs were purified by Qiagen column chromatography which could separate viroid specific nucleic acid at differential salt concentration. After the inoculation of the purified RNAs from the peonies, the inoculated tomatoes (cv. Rutgers) expressed the symptoms of stunt and epinasty. Also the same molecular weight RNAs with viroid-like RNAs were isolated from the inoculated tomatoes. Double-stranded cDNA were synthesized by the methods of reverse transcription (RT) and polymerase chain reaction (PCR) with the purified RNA and primers. The same cDNAs associated with viroid-like RNAs wre cloned from the inoculated tomatoes. The cDNA has been sequenced and its 375-nucleotides were arranged into secondary structure. The cloned cDNA showed 47~54% homology compared with other viroids. The sequence homology of the cloned cDNA were partially high with plant genomic RNAs.

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The effect of 3-mercapto-5-nitro-benzimidazole (MNB) and poly (methyl methacrylate) (PMMA) treatment sequence organic thin film transistor

  • Park, Jin-Seong;Suh, Min-Chul;Jeong, Jong-Han;Kim, Su-Young;Mo, Yeon-Gon
    • 한국정보디스플레이학회:학술대회논문집
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    • 한국정보디스플레이학회 2006년도 6th International Meeting on Information Display
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    • pp.1174-1177
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    • 2006
  • A bottom contact organic thin film transistor (OTFT) is fabricated with an organic double-layered gate insulator (GI) and pentacene. The PMMA and MNB layers are treated on gate insulator and source/drain (S/D, Au) before depositing pentacene to investigate device properties and pentacene growth. The sequence of surface treatment affects a device performance seriously. The ultra-thin PMMA (below 50A) was deposited on organic gate insulator and S/D metal by spin coating method, which showed no deterioration of on-state current (Ion) although bottom contact structure was exploited. We proposed that the reason of no contact resistance (Rc) increase may be due to a wettability difference in between PMMA / Au and PMMA / organic GI. As a result, the device treated by $PMMA\;{\rightarrow}\;MNB$ showed much better Ion behavior than those fabricated by $MNB\;{\rightarrow}\;PMMA$. We will report the important physical and electrical performance difference associated with surface treatment sequence.

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식물에서의 상동재조합을 이용한 효율적인 진타겟팅 시스템 (An efficient gene targeting system using homologous recombination in plants)

  • 권용익;이효연
    • Journal of Plant Biotechnology
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    • 제42권3호
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    • pp.154-160
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    • 2015
  • The plant breeding technology was developed with genetic engineering. Many researchers and breeders have turned from traditional breeding to molecular breeding. Genetically modified organisms (GMO) were developed via molecular breeding technology. Currently, molecular breeding technologies facilitate efficient plant breeding without introducing foreign genes, in virtue by of gene editing technology. Gene targeting (GT) via homologous recombination (HR) is one of the best gene editing methods available to modify specific DNA sequences in genomes. GT utilizes DNA repair pathways. Thus, DNA repair systems are controlled to enhance HR processing. Engineered sequence specific endonucleases were applied to improve GT efficiency. Engineered sequence specific endonucleases like the zinc finger nuclease (ZFN), TAL effector nuclease (TALEN), and CRISPR-Cas9 create DNA double-strand breaks (DSB) that can stimulate HR at a target site. RecQl4, Exo1 and Rad51 are effectors that enhance DSB repair via the HR pathway. This review focuses on recent developments in engineered sequence specific endonucleases and ways to improve the efficiency of GT via HR effectors in plants.

Nocardioides sp. J-326TK의 Adenosine Deaminase Gene에 관한 연구 (Studies on the Adenosine Deaminase Gene from Nocardioides sp. J-326TK)

  • 전홍기;백형석;정춘식
    • 생명과학회지
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    • 제8권6호
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    • pp.673-680
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    • 1998
  • Nocardioides sp. J-326TK의 adenosine deaminase gene을 분리하기 위하여 genomic DNA를 제한효소로 무작위적으로 절단하여 pBluscript KS에 ligation시켰다. 또한 hu-man과 mouse, E. cali 등의 adenosine deaminase gene의 보존적인 부위를 primer로 합성을 하여 PCR reaction을 행하였다. Genomic DNA를 cloning시킨 pKSN60은 5kb정도의 DNA를 포함하고 있으며 sourthern hybridization 등의 여러 확인 실험을 통하여 adenosine deaminase gene을 포함하고 있다는 알았다. PCR product를 cloning시켜 형성된 recombinant plasmid를 PCR reaction의 primer로서 pTBN20를 sequencing을 행하였다. 그 결과를 다른 ade-nosine deaminase gene의 서열과 비교를 하였는데 미생물인 E. coli와는 nucleotide sequence는 99.5%, amino acid sequence는 98.9%의 homology를 나타내고 human과는 각각 59.5%, 46.8%의 homolosy를 나타내었다.

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Programmatic Sequence for the Automatic Adjustment of Double Relaxation Oscillation SQUID Sensors

  • Kim, Kiwoong;Lee, Yong-Ho;Hyukchan Kwon;Kim, Jin-Mok;Kang, Chan-Seok;Kim, In-Seon;Park, Yong-Ki
    • Progress in Superconductivity
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    • 제4권1호
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    • pp.42-47
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    • 2002
  • Measuring magnetic fields with a SQUID sensor always requires preliminary adjustments such as optimum bas current determination and flux-locking point search. A conventional magnetoencephalography (MEG) system consists of several dozens of sensors and we should condition each sensor one by one for an experiment. This timeconsuming job is not only cumbersome but also impractical for the common use in hospital. We had developed a serial port communication protocol between SQUID sensor controllers and a personal computer in order to control the sensors. However, theserial-bus-based control is too slow for adjusting all the sensors with a sufficient accuracy in a reasonable time. In this work, we introduce programmatic control sequence that saves the number of the control pulse arrays. The sequence separates into two stages. The first stage is a function for searching flux-locking points of the sensors and the other stage is for determining the optimum bias current that operates a sensor in a minimum noise level Generally, the optimum bias current for a SQUID sensor depends on the manufactured structure, so that it will not easily change about. Therefore, we can reduce the time for the optimum bias current determination by using the saved values that have been measured once by the second stage sequence. Applying the first stage sequence to a practical use, it has taken about 2-3 minutes to perform the flux-locking for our 37-channel SQUID magnetometer system.

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Polynomial Unknotting and Singularity Index

  • Mishra, Rama
    • Kyungpook Mathematical Journal
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    • 제54권2호
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    • pp.271-292
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    • 2014
  • We introduce a new method to transform a knot diagram into a diagram of an unknot using a polynomial representation of the knot. Here the unknotting sequence of a knot diagram with least number of crossing changes can be realized by a family of polynomial maps. The number of singular knots in this family is defined to be the singularity index of the diagram. We show that the singularity index of a diagram is always less than or equal to its unknotting number.

An Approach to Double Hoist Scheduling in the Chemical Processes

  • Lim, Joon-Mook;Hwang, Hark
    • 한국경영과학회지
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    • 제18권2호
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    • pp.131-145
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    • 1993
  • This paper deals with scheduling problem of the chemical process system where aircraft parts go through a given sequence of tanks filled with chemical solutions. The system has two hoists which move carriers holding the parts between tanks. A mixed integer programming model is developed from which a maximum throughput schedule can be found for the hoist movements. To show the validity of the model, a real world problem is solved and the results are compared with those with an existing approach.

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고 함량 트립토판 생산 GM 벼 개발 및 전사체 분석 (Development of high tryptophan GM rice and its transcriptome analysis)

  • 정유진;;조용구;강권규
    • Journal of Plant Biotechnology
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    • 제42권3호
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    • pp.186-195
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    • 2015
  • Anthranilate synthase (AS)는 트립토판(Trp)과 indole-3-acetic acid, indole alkaloids의 생합성 경로에서 중요한 효소로 작용한다. 트립토판 생합성 상에서 feedback inhibition에 민감하게 반응하는 AS alpha-subunit 관련 OASA2 유전자 영역의 single (F124V) 및 double (S126F/L530D) 점돌연변이로 변형된 유전자의 재조합운반체를 작성하고 이들 유전자들을 Agrobacterium 방법으로 동진벼에 도입하여 형질전환체를 육성하였다. Single 및 double 돌연변이 OsASA2 유전자가 도입된 형질전환 벼 계통들은 nos gene probe를 이용한 TaqMan PCR 방법으로 single copy를 선발하였고, intergenic 계통을 선발하기 위해서 Bfa I 제한효소를 이용하여 RB와 LB 인접서열로부터 IPCR을 통한 FST 분석을 수행하여 4 개의 intergenic 계통을 선발하였다. 도입된 유전자의 발현으로 형질전환 벼는 Trp, IAN 및 IAA가 잎에 가장 많이 축적되었고, 종자의 트립토판 함량도 증가되었다. 후대에서 tryptophan 함량이 높은 S-TG와 D-TG의 두 호모 이벤트 계통을 육성하여 트립토판 함량을 분석한 결과 대조구에 비하여 13~30배 이상 높게 나타났으며, 유리아미노산의 함량도 증가하였다. 이벤트 계통을 이용하여 microarray 분석을 수행한 결과 세포 내 이온 수송, 영양분 공급 등에 영향을 주는 유전자군들이 up-regulation 되었고, 세포 내 기능유전자의 역할을 담당하는 조효소 등이 down-regulation 된 것을 확인 할 수 있었다. 이러한 결과는 선발된 두개의 상동성 이벤트 계통들이 고함량의 유리 트립토판 생산 벼의 육종에 효과적으로 이용될 수 있음을 보여준 결과로 생각된다.

Contrast-enhanced Magnetic Resonance Imaging of Brain Metastases at 7.0T versus 1.5T: A Preliminary Result

  • Paek, Sun Ha;Kim, Jhi-Hoon;Choi, Sung-Hong;Yoon, Tae-Jin;Son, Young Don;Kim, Dong Gyu;Cho, Zang-Hee;Sohn, Chul-Ho
    • Investigative Magnetic Resonance Imaging
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    • 제19권1호
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    • pp.31-36
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    • 2015
  • Purpose: To compare the depiction of brain metastases on contrast-enhanced images with 7.0 tesla (T) and at 1.5T MRI. Materials and Methods: Four consecutive patients with brain metastases were scanned on 7.0T whole-body scanner and 1.5T MRI. A 3D T1-weighted gradient echo sequence (3D T1-GRE) at 1.5T (voxel size = $0.9{\times}0.9{\times}1.5mm^3$ after double-dose, gadoterate meglumine, Gd-DOTA) was compared to a 7.0T 3D T1-GRE sequence (voxel size = $0.4{\times}0.4{\times}0.8mm^3$, single-dose Gd-DOTA) in four patients after a 5 minute delay. The number of contrast-enhancing metastases in MPRAGE images was compared in each patient by two radiologists in consensus. We measured contrast ratio of enhancing brain metastases and white matter in 1.5T and 7.0T. Results: In all four patients 7.0T 3D T1-GRE images after single-dose Gd-DOTA and 1.5T after double-dose Gd-DOTA depicted 11 brain metastases equally. In the quantitative analysis of contrast ratios of enhancing brain metastases and white matter, the 1.5T 3D T1-GRE after double-dose showed an increased contrast ratio compared to 7.0T 3D T1-GRE after single-dose ($0.961{\pm}0.571$ versus $0.885{\pm}0.494$; n = 11 metastases). But this difference was not statistically significant (P = 0.711). Conclusion: Our preliminary results indicate that 7.0T single-dose Gd-enhanced images were not different to 1.5T double-dose Gd-enhanced images for the detection of brain metastases.

미토콘드리아 COI와 핵 RAG1 유전자 분석에 의한 줄종개(Cobitis tetralineata)와 왕종개(Iksookimia longicorpa) 간 자연잡종 동정 (Identification of a Natural Hybrid between the Striped Spine Loach Cobitis tetralineata and the King Spine Loach Iksookimia longicorpa by Analyzing Mitochondrial COI and Nuclear RAG1 Sequences)

  • 이일로;양현;김종환;김근용;방인철
    • 한국어류학회지
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    • 제21권4호
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    • pp.287-290
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    • 2009
  • 줄종개(Cobitis tetralineata)와 왕종개(Iksookimia longicorpa)간 자연잡종으로 추정되는 개체를 유전적으로 동정하기 위하여 핵 recombination activating gene 1 (RAG1)과 미토콘드리아 cytochrome c oxidase I (COI) 유전자들의 염기서열을 분석하였다. RAG1 염기서열을 분석한 결과 850 bp 중에서 두 친어종들 간에 총 23개의 치환이 관찰되었고, 자연잡종 개체의 electropherogram에서는 이들 치환이 관찰된 모든 위치들에서 double peak들이 관찰되어, 멘델의 유전법칙을 따랐다. 그리고 모계를 통해 자손에게 유전되는 특징을 가지는 미토콘드리아 유전자들 중에서 COI 염기서열을 비교한 결과 잡종 개체는 줄종개와 염기서열이 100% 일치하여 그 모계는 줄종개임이 명확히 밝혀졌다.