• Proceedings of the Korean Society for Bioinformatics Conference
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• 2005.09a
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• pp.156-160
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• 2005

We introduce a fully automatic clustering method to classier candidate paralog clusters from a set of protein sequences within one genome. A set of protein sequences is represented as a set of nodes, each represented by the amino acid sequence for a protein with the sequence similarities among them constituting a set of edges in a graph of protein relationships. We use graph-based clustering methods to identify structurally consistent sets of nodes which are strongly connected with each other. Our results are consistent with those from current leading systems such as COG/KOG and KEGG based on manual curation. All the results are viewable at http://www.cs.rutgers.edu/${\sim}$seabee.

• Communications of the Korean Mathematical Society
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• v.24 no.2
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• pp.161-169
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• 2009

In this paper, we introduce the generalized ideal-based zero-divisor graph structure of near-ring N, denoted by $\widehat{{\Gamma}_I(N)}$. It is shown that if I is a completely reflexive ideal of N, then every two vertices in $\widehat{{\Gamma}_I(N)}$ are connected by a path of length at most 3, and if $\widehat{{\Gamma}_I(N)}$ contains a cycle, then the core K of $\widehat{{\Gamma}_I(N)}$ is a union of triangles and rectangles. We have shown that if $\widehat{{\Gamma}_I(N)}$ is a bipartite graph for a completely semiprime ideal I of N, then N has two prime ideals whose intersection is I.

• Bulletin of the Korean Mathematical Society
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• v.45 no.2
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• pp.385-396
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• 2008

For a positive integer m and a digraph D, the m-step competition graph $C^m$ (D) of D has he same set of vertices as D and an edge between vertices u and v if and only if there is a vertex x in D such that there are directed walks of length m from u to x and from v to x. Cho and Kim [6] introduced notions of competition index and competition period of D for a strongly connected digraph D. In this paper, we extend these notions to a general digraph D. In addition, we study competition indices of tournaments.

• Kyungpook Mathematical Journal
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• v.52 no.4
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• pp.513-519
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• 2012

For a spanning tree T of a connected graph ${\Gamma}$ and for a labelling ${\phi}$: E(T) ${\rightarrow}$ {+,-},${\phi}$ is called an alternating sign on a spanning tree T of a graph ${\Gamma}$ if for any cotree edge $e{\in}E({\Gamma})-E(T)$, the unique path in T joining both end vertices of e has alternating signs. In the present article, we prove that any graph has a spanning tree T and an alternating sign on T.

• International Journal of Contents
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• v.7 no.3
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• pp.19-28
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• 2011

This paper presents a fast and practical motion synthesis algorithm for massive number of quadruped animals. The algorithm constructs so called speed maps that contain a set of same style motions but different speed from a single cyclic motion by using IK(Inverse Kinematics) solver. Then, those speed maps are connected each other to form a motion graph. At run time, given a point trajectory that obtained from user specification or simulators, the algorithm retrieves proper speed motions from the graph, and modifies and stitches them together to create a long seamless motion in real time. Since our algorithm mainly targets on the massive quadruped animal motions, the motion graph create wide variety of different size of characters for each trajectory and automatically adjusted synthesized motions without causing artifact such as foot skating. The performance of algorithm is verified through several experiments

• Information Systems Review
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• v.6 no.2
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• pp.65-77
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• 2004

Business intelligence assumes an integrated and inter-connected information resources. To manage an integrated database, we need to trace data transformation processes from its outset. For this purpose, this study proposes an extended Information Structure Graph that models data transformation steps in addition to data transformation structures. Using the graph, we can identify relationship among data entities and assign data quality measures to each nodes or arcs of a graph, thus eases management of data and enhancing their quality.

• Kyungpook Mathematical Journal
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• v.60 no.3
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• pp.467-475
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• 2020

Let G be a chemical graph with vertex set {v₁, v₁, …, v_n} and degree sequence d(G) = (deg_G(v₁), deg_G(v₂), …, deg_G(v_n)). The inverse degree, R(G) of G is defined as $R(G)={\sum{_{i=1}^{n}}}\;{\frac{1}{deg_G(v_i)}}$. The cyclomatic number of G is defined as γ = m - n + k, where m, n and k are the number of edges, vertices and components of G, respectively. In this paper, some upper bounds on the diameter of a chemical graph in terms of its inverse degree are given. We also obtain an ordering of connected chemical graphs with respect to the inverse degree.

• Journal of the Korean Mathematical Society
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• v.58 no.3
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• pp.703-722
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• 2021

Let G = (V, E) be a connected locally finite and weighted graph, ∆_p be the p-th graph Laplacian. Consider the p-th nonlinear equation -∆_pu + h|u|^p-2u = f(x, u) on G, where p > 2, h, f satisfy certain assumptions. Grigor'yan-Lin-Yang [24] proved the existence of the solution to the above nonlinear equation in a bounded domain Ω ⊂ V. In this paper, we show that there exists a strictly positive solution on the infinite set V to the above nonlinear equation by modifying some conditions in [24]. To the m-order differential operator 𝓛_m,p, we also prove the existence of the nontrivial solution to the analogous nonlinear equation.

• Honam Mathematical Journal
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• v.42 no.4
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• pp.645-651
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• 2020

The distinguishing number (index) D(G) (D'(G)) of a graph G is the least integer d such that G has an vertex labeling (edge labeling) with d labels that is preserved only by a trivial automorphism. The strong product G ☒ H of two graphs G and H is the graph with vertex set V (G) × V (H) and edge set {{(x1, x2),(y1, y2)}|xiyi ∈ E(Gi) or xi = yi for each 1 ≤ i ≤ 2.}. In this paper we study the distinguishing number and the distinguishing index of strong product of two graphs. We prove that for every k ≥ 2, the k-th strong power of a connected S-thin graph G has distinguishing index equal two.

• Journal of the Korean Mathematical Society
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• v.61 no.1
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• pp.133-147
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• 2024

Let G = (V, E) be a connected finite graph. We study the existence of solutions for the following generalized Chern-Simons equation on G $${\Delta}u={\lambda}e^u(e^u-1)^5+4{\pi}\sum_{s=1}^{N}\delta_{ps}$$, where λ > 0, δ_ps is the Dirac mass at the vertex p_s, and p₁, p₂, . . . , p_N are arbitrarily chosen distinct vertices on the graph. We show that there exists a critical value $\hat{\lambda}$ such that when λ > $\hat{\lambda}$, the generalized Chern-Simons equation has at least two solutions, when λ = $\hat{\lambda}$, the generalized Chern-Simons equation has a solution, and when λ < $\hat{\lambda}$, the generalized Chern-Simons equation has no solution.