• Title/Summary/Keyword: coding sequences

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A Video Sequence Coding Using Dynamic Selection of Unrestricted Motion Vector Mode in H.263 (H.263의 비제한 움직임 벡터 모드의 동적 선택을 이용한 영상 부호화)

  • 박성한;박성태
    • Journal of the Korea Computer Industry Society
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    • v.2 no.8
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    • pp.1075-1088
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    • 2001
  • In this paper, we propose a method for dynamic selection of unrestricted motion vector(UMV) or default prediction mode(DPM) in H.263 bit stream. For this, we use the error of compensated image and the magnitude of motion vector. In the proposed strategy, the UMV mode is dynamically applied in a frame according to average magnitude of motion vector and error of compensated image. This scheme has improved the quality of image compared to the fixed mode UMV or DPM only. Number of searching points are greatly reduced when comparing to UMV The proposed method is more profitable to long video sequences having camera movement locally.

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A Cross-Layer Unequal Error Protection Scheme for Prioritized H.264 Video using RCPC Codes and Hierarchical QAM

  • Chung, Wei-Ho;Kumar, Sunil;Paluri, Seethal;Nagaraj, Santosh;Annamalai, Annamalai Jr.;Matyjas, John D.
    • Journal of Information Processing Systems
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    • v.9 no.1
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    • pp.53-68
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    • 2013
  • We investigate the rate-compatible punctured convolutional (RCPC) codes concatenated with hierarchical QAM for designing a cross-layer unequal error protection scheme for H.264 coded sequences. We first divide the H.264 encoded video slices into three priority classes based on their relative importance. We investigate the system constraints and propose an optimization formulation to compute the optimal parameters of the proposed system for the given source significance information. An upper bound to the significance-weighted bit error rate in the proposed system is derived as a function of system parameters, including the code rate and geometry of the constellation. An example is given with design rules for H.264 video communications and 3.5-4 dB PSNR improvement over existing RCPC based techniques for AWGN wireless channels is shown through simulations.

Cloning and Expression of the Rhodobacter capsulatus hemA Gene in E. coli for the Production of S-Aminolevulinic Acid

  • KANG , DAE-KYUNG;KIM, SANG-SUK;CHI, WON-JAE;HONG, SOON-KWANG;KIM, HA-KUN;KIM, HYUN-UK
    • Journal of Microbiology and Biotechnology
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    • v.14 no.6
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    • pp.1327-1332
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    • 2004
  • The hemA gene encoding 5-aminolevulinic acid synthase (ALAS) was cloned from Rhodobacter capsulatus, and its nucleotide sequence was determined. DNA sequencing data revealed one open reading frame coding for a protein with 401 amino acids that displayed high similarity to the amino acid sequences of other known ALASs. The hemA gene was then cloned and expressed under the control of constitutive promotor in E. coli. The recombinant E. coli strain was able to accumulate 5-aminolevulinic acid to 21 mM in the liquid medium supplemented with 45 mM glycine and 120 mM succinate. In addition, a marked effect of the pH of the culture medium on ALA production was observed, and the optimum pH for culture medium was determined to be 5.8-6.3.

Expression of Streptodornase by Use of Streptokinase Promoter in Streptococcus equismilis H46A. (Streptococcus equisimilis H46A에서 Streptokinase 프로모터를 이용한 Streptodornase 발현 증진)

  • Son, Hyun-Jung;Jin, Jong-Eon;Kim, Il-Chul;Bae, Seok;Lee, Hwang-Hee
    • Microbiology and Biotechnology Letters
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    • v.31 no.3
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    • pp.307-310
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    • 2003
  • A gene encoding streptodornase(sdc) from Streptococcus equisimilis H46A was expressed in S. equisimilis H64H sdc under the control of the streptokinase gene promoter. Secretion of the streptodornase was directed by the signal sequences of streptokinase or streptodornase. The expressed streptodornase activity from S. equisimilis H46A sdc transformant with streptokinase promoter - streptodornase coding sequence fusion vector was 2.3 fold higher than that from wild type. Construct of signal sequence region replaced by streptokinase ones was similarly expressed as a wild type. But constructs of skc or lrp core regions of streptokinase promoter streptodornase fusion were similarly expressed as in sdc mutant. In conclusion, improved expression of streptodornase by use of streptokinase promoter required the full length of promoter.

Isolation and Analysis of the argG Gene Encoding Argininosuccinate Synthetase from Corynebacterium glutamicum

  • Ko, Soon-Young;Kim, Sei-Hyun;Lee, Heung-Shick;Lee, Myeong-Sok
    • Journal of Microbiology and Biotechnology
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    • v.13 no.6
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    • pp.949-954
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    • 2003
  • The argG gene of Corynebacterium glutamicum encoding argininosuccinate synthetase (EC6345) was cloned and sequenced. The gene was cloned by heterologous complementation of an Escherichia coli arginine auxotrophic mutant (argG/sup -/). The cloned DNA fragment also complements E. coli argD, argF, and argH mutants, suggesting a clustered organization of the genes in the chromosome. The coding region of the argG gene is 1,206 nucleotides long with a deduced molecular weight of about 44 kDa, comparable with the predicted size of the expressed protein on the SDS-PAGE. Computer analysis revealed that the amino acid sequence of the argG gene product had a high similarity to that of Mycobacterium tuberculosis and Streptomyces clavuligerus. Two conserved sequence motifs within the ArgG appear to be ATP-binding sites which correspond to 2 of the 3 conserved regions found in sequences of all known argininosuccinate synthetases.

Cloning and Expression of Bovine Polyadenylate Binding Protein 1 cDNA in Mammary Tissues

  • Kim, J.H.;Jeon, D.H.;Choi, Y.J.;Baik, M.G.
    • Asian-Australasian Journal of Animal Sciences
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    • v.14 no.6
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    • pp.771-776
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    • 2001
  • A pregnant-induced clone was identified by differential screening from a cDNA library of bovine mammary gland. The clone was identified as a cDNA encoding a polyadenylate binding protein 1 (PABP). The cDNA clone had a total length of 1,911 nucleotides coding for 636 amino acids. The nucleotide sequence of the bovine PABP was 95% and 94% identical to those of human and mouse species, respectively. Comparison of the deduced amino acid sequences of bovine PABP with those of human species showed 100% identity. Induction of the PABP mRNA was observed in bovine mammary tissues at pregnant 7 and 8 months compared to virgin, lactating and involuted states. Expression of the PABP gene was examined in mammary epithelial HC11 cells at proliferating, differentiated and apoptotic conditions. The mRNA levels of PABP gene were similar between proliferating and differentiated cells, but expression levels were very low in apoptotic cells compared to other conditions. Results demonstrate that the PABP gene is induced during pregnancy at which stage mammary epithelial cells are actively proliferating.

Estimation of the Efficiency of Transgenic Rabbit Production Following GFP Gene Microinjection into Rabbit Zygotes

  • Jin, D.I.;Im, K.S.;Kim, D.K.;Choi, W.S.
    • Asian-Australasian Journal of Animal Sciences
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    • v.13 no.10
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    • pp.1367-1372
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    • 2000
  • The present study was conducted to evaluate the efficiency of transgenic rabbit production by DNA microinjection using EGFP (Enhanced Green Fluorescent Protein) gene. In this experiment EGFP coding sequences fused to CMV promoter were microinjected into rabbit one-cell embryos, and then GFP expression and gene integration were evaluated in preimplantation embryos and fetuses recovered on day 15 of pregnancy to determine efficiency of transgenic rabbit production. Effect of DNA concentration was also tested on development in vitro following microinjection and transgene integration in fetuses. Development of embryos in vitro was decreased by DNA microinjection, but the rates of pregnancy and implantation were not significantly affected by microinjection. As development progressed in vitro percentage of GFP expression in rabbit embryos was decreased, resulting GFP expression detected in 37.5% of blastocysts. The efficiencies for production of transgenic fetuses were 4.0% and 7.6%, respectively, when $10ng/{\mu}l$ and $20ng/{\mu}l$ of DNA concentration were microinjected. Transgenic fetuses were confirmed by GFP expression and PCR analysis of fetus genomic DNA. These results indicated that DNA microinjection itself damaged embryo development and DNA concentration affected the efficiency of transgenic rabbit production.

Identification of Novel Non-Metal Haloperoxidases from the Marine Metagenome

  • Gwon, Hui-Jeong;Teruhiko, Ide;Shigeaki, Harayama;Baik, Sang-Ho
    • Journal of Microbiology and Biotechnology
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    • v.24 no.6
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    • pp.835-842
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    • 2014
  • Haloperoxidase (HPO, E.C.1.11.1.7) is a metal-containing enzyme oxidizing halonium species, which can be used in the synthesis of halogenated organic compounds, for instance in the production of antimicrobial agents, cosmetics, etc., in the presence of halides and $H_2O_2$. To isolate and evaluate a novel non-metal HPO using a culture-independent method, a cassette PCR library was constructed from marine seawater in Japan. We first isolated a novel HPO gene from Pseudomonas putida ATCC11172 by PCR for constructing the chimeric HPO library (HPO11172). HPO11172 showed each single open-reading frame of 828 base pairs coding for 276 amino acids, respectively, and showed 87% similarity with P. putida IF-3 sequences. Approximately 600 transformants screened for chimeric genes between P. putida ATCC11173 and HPO central fragments were able to identify 113 active clones. Among them, we finally isolated 20 novel HPO genes. Sequence analyses of the obtained 20 clones showed higher homology genes with P. putida or Sinorhizobium or Streptomyces strains. Although the HPO A9 clone showed the lowest homology with HPO11172, clones in group B, including CS19, showed a relatively higher homology of 80%, with 70% identy. E. coli cells expressing these HPO chimeric genes were able to successfully bioconvert chlorodimedone with KBr or KCl as substrate.

Motion Estimation Using Modified Cost Functions (변형된 비용 함수를 이용한 움직임 추정 기법)

  • 조한욱;서정욱;정제창
    • Journal of Broadcast Engineering
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    • v.3 no.1
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    • pp.100-109
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    • 1998
  • The coding of video sequences has been the focus of research in recent years. High Definition TV(HDTV), video conferencing and video on demand(VOD) are some of the well known applications. In the moving picture compression, motion estimation algorithm plays a very important role, but due to its high computational complexity, there has been many approaches to overcome this difficulty. We propose a new block matching criterion that uses modified cost functions. This new block matching criterion classifies pixels into 2-levels, 4-levels and 8-levels with a suitable thresholding method. We also show that our new proposed algorithms can easily be combined with many other fast motion estimation algorithms with good performance.

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Complete genome sequence of Bacillus thuringiensis C25, a potential biocontrol agent for sclerotia-forming fungal phytopathogens (생물학적방제 효과가 뛰어난 Bacillus thuringiensis C25 균주의 유전체 분석)

  • Lee, Hwa-Yong;Won, Kyungho;Kim, Yoon-Kyeong;Cho, Min;Kim, Kangmin;Ryu, Hojin
    • Korean Journal of Microbiology
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    • v.53 no.3
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    • pp.216-218
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    • 2017
  • We here provide the complete genome sequence of Bacillus thuringiensis C25, the strain showing antagonistic effects on fungal phytopathogens. The genome comprised of 5,308,062 bp with 35.32% G+C content of a circular chromosome and a plasmid containing 308,946 bp with 32.23% G+C content. The chromosome and plasmid genome included 5,683 protein coding DNA sequences, 107 tRNA and 42 rRNA genes.