• Title/Summary/Keyword: biological assessment

Search Result 1,251, Processing Time 0.029 seconds

Sequential Assessment in Contests among Common Freshwater Goby, Rhinogobius brunneus(Pisces, Gobiidae)

  • Suk, Ho-Young;Choe, Jae-C.
    • Animal cells and systems
    • /
    • v.5 no.4
    • /
    • pp.313-317
    • /
    • 2001
  • The sequential assessment model describes a fight between two conspecific as an ongoing statistical sampling process, which makes it possible to predict fight length or repetition number of a behavioral element depending on relative RHP (resource holding potential: e.g. weight or fighting ability). We staged contests between males of common freshwater gobies to test some predictions of this model. Fights proceeded in a consistent sequence of phases. Most contests began with two contestants adopting lateral display, and then escalated to intense physical contacts. The length of contests was negatively correlated with weight difference between the contestants. The duration of complete phases was, however, independent of weight, and the prior information gained during complete phases did not appear to affect subsequent phases of the fight. Our results show that the contests of common freshwater gobies are well predicted by the sequential assessment model.

  • PDF

Marine ecosystem risk assessment using a land-based marine closed mesocosm: Proposal of objective impact assessment tool (육상 기반 해양 폐쇄형 인공생태계를 활용한 해양생태계 위해성 평가: 객관적인 영향 평가 tool 제시)

  • Yoon, Sung-Jin
    • Korean Journal of Environmental Biology
    • /
    • v.39 no.1
    • /
    • pp.88-99
    • /
    • 2021
  • In this study, a land-based marine closed mesocosm (LMCM) experiment was performed to objectively assess the initial stability of an artificial ecosystem experiment against biological and non-biological factors when evaluating ecosystem risk assessment. Changes in the CV (coefficient of value) amplitude were used as data to analyze the stability of the experimental system. The CV of the experimental variables in the LMCM groups (200, 400, 600, and 1,000 L) was maintained within the range of 20-30% for the abiotic variables in this study. However, the difference in CV amplitude in biological factors such as chlorophyll-a, phytoplankton, and zooplankton was high in the 600 L and 1,000 L LMCM groups. This result was interpreted as occurring due to the lack of control over biological variables at the beginning of the experiment. In addition, according to the ANOVA results, significant differences were found in biological contents such as COD (chemical oxygen demand), chlorophyll-a, phosphate, and zooplankton in the CV values between the LMCM groups(p<0.05). In this study, the stabilization of biological variables was necessary to to control and maintain the rate of changes in initial biological variables except for controllable water quality and nutrients. However, given the complexity of the eco-physiological activities of large-scale LMCMs and organisms in the experimental group, it was difficult to do. In conclusion, artificial ecosystem experiments as a scientific tool can distinguish biological and non-biological factors and compare and analyze clear endpoints. Therefore, it is deemed necessary to establish research objectives, select content that can maintain stability, and introduce standardized analysis techniques that can objectively interpret the experimental results.

Assessment and Treatment of Postconcussion Syndrome (뇌진탕증후군의 평가와 치료)

  • Rho, Seung Ho
    • Korean Journal of Biological Psychiatry
    • /
    • v.2 no.2
    • /
    • pp.186-192
    • /
    • 1995
  • The Neuropsychiatric assessment and management of postconcussion syndrome(PCS), the most prevalent and controversial neuropsychiatric sequelae of traumatic brain injury, were reviewed. First, the definition and general concept of postconcussion syndrome Were summerized. This summary was followed by an overview of the clinical manifestation including cognitive, somatic, and behavioral components of PCS. Next, neuropsychological findings related to PCS were presented. Finally, the treatment issues including psychotherapy and pharamacotherapy were briefly summerized.

  • PDF

A Study on the Master Plan of Natural Environment Conservation compared with National Biological Survey in USA (환경부 전국자연환경조사사업의 문제점과 개선방안 - 미국의 사례를 중심으로 -)

  • Lee, Sang-Don
    • Journal of Environmental Impact Assessment
    • /
    • v.12 no.1
    • /
    • pp.1-8
    • /
    • 2003
  • The Master Plan of Natural Environment Conservation in Korea by Ministry of Environment has been carried out since 1986. The 2nd 10-year survey started in 1997, and there are three major parts in the Master Plan : First, the basic natural environment survey, second, sites in special features of ecological characteristics such as uninhabitable islands, wetlands, etc, and third, biological species featuring status of habitat, and population dynamics. However the information in the Master Plan is very fragmented and collected data are not so abundant due to insufficient man-power and unsynchronized survey time/season. In this regard this paper examined the similar National Biological Survey in USA and compared the differences with the Master Plan in Korea. The Master Plan in Korea should separate the management zone based on hydrological characteristics, and in each zone we should set a management goal in the long term basis. Secondly the species list is not so meaningful that we must concentrate more on research activities. In each taxonomical group we set up hypotheses and research goals. Thirdly local residents and communities should be involved in research so that enhanced biological diversity should benefit people in areas. Lastly legislation and laws should be reexamined and rectified to provide information to the managers that deals with natural resources, expecially when conflicting with economic matters.

Studies on the Integrated Stream Naturalness Assessment Based on Abiotic and Biotic Factors (비생물 및 생물 요인에 기초한 통합적 하천자연도 평가기법에 관한 연구)

  • Pyo, Jae-Hun;Mun, Hyeong-Tae
    • Journal of Environmental Impact Assessment
    • /
    • v.20 no.1
    • /
    • pp.61-69
    • /
    • 2011
  • Integrated stream naturalness based on abiotic and biotic factors were developed. Abiotic factors considered in this study were types of land use in the riparian area, river bank and high water bed streamside, revetment, bed substrate and artificial construction of streamside. Biotic factors included types of vegetation, assemblages of fish, macroinvertebrate, bird and mammal(Otter) in streams. The presence/absence of legal species and biological assessment index were also weighted as important parameters in this study. Scoring criteria selected for each matrix was five rating system; 1=poor, 2=moderate, 3=fair, 4=good, 5=excellent. Numerical ratings for the matrix were then summed. This resulted in a minimum score of 13 if all matrix at a site were poor, and a maximum score of 65 if all matrix were excellent. Five grade system from poor(I) to excellent condition(V) was employed. To verify its validity in natural environment, the evaluation system was applied to the Gapchun stream which is a test bed selected. Our result showed that stream naturalness of each reach was clearly distinguished by biotic and abiotic characteristics. Determination of correlation coefficient between abiotic and biotic factors was also high ($R^2=0.96$, p<0.05). In conclusion, assessment for stream naturalness reflecting abiotic and biotic factors was useful method representing stream integrated.

RNA-Seq De Novo Assembly and Differential Transcriptome Analysis of Korean Medicinal Herb Cirsium japonicum var. spinossimum

  • Roy, Neha Samir;Kim, Jung-A;Choi, Ah-Young;Ban, Yong-Wook;Park, Nam-Il;Park, Kyong-Cheul;Yang, Hee-sun;Choi, Ik-Young;Kim, Soonok
    • Genomics & Informatics
    • /
    • v.16 no.4
    • /
    • pp.34.1-34.9
    • /
    • 2018
  • Cirsium japonicum belongs to the Asteraceae or Compositae family and is a medicinal plant in Asia that has a variety of effects, including tumour inhibition, improved immunity with flavones, and antidiabetic and hepatoprotective effects. Silymarin is synthesized by 4-coumaroyl-CoA via both the flavonoid and phenylpropanoid pathways to produce the immediate precursors taxifolin and coniferyl alcohol. Then, the oxidative radicalization of taxifolin and coniferyl alcohol produces silymarin. We identified the expression of genes related to the synthesis of silymarin in C. japonicum in three different tissues, namely, flowers, leaves, and roots, through RNA sequencing. We obtained 51,133 unigenes from transcriptome sequencing by de novo assembly using Trinity v2.1.1, TransDecoder v2.0.1, and CD-HIT v4.6 software. The differentially expressed gene analysis revealed that the expression of genes related to the flavonoid pathway was higher in the flowers, whereas the phenylpropanoid pathway was more highly expressed in the roots. In this study, we established a global transcriptome dataset for C. japonicum. The data shall not only be useful to focus more deeply on the genes related to product medicinal metabolite including flavolignan but also to study the functional genomics for genetic engineering of C. japonicum.

Identification and Biochemical Characterization of a New Xylan-degrading Streptomyces atrovirens Subspecies WJ-2 Isolated from Soil of Jeju Island in Korea (제주도 토양으로부터 자일란 분해 Streptomyces atrovirens subspecies WJ-2 동정 및 효소의 생화학적 특성 규명)

  • Kim, Da Som;Bae, Chang Hwan;Yeo, Joo Hong;Chi, Won-Jae
    • Microbiology and Biotechnology Letters
    • /
    • v.44 no.4
    • /
    • pp.512-521
    • /
    • 2016
  • A bacterial strain was isolated from a soil sample collected on Jeju Island, Korea. The strain, designated WJ-2, exhibited a high xylanase activity, whereas cellulase activity was not detected. The 16S rRNA gene sequence of WJ-2 was highly similar to type strains of the genus Streptomyces. A neighbor-joining phylogenetic tree based on 16S rRNA gene sequences showed that strain WJ-2 is phylogenetically related to Streptomyces atrovirens. Furthermore, DNA-DNA hybridization analysis confirmed that strain WJ-2 is a novel subspecies of Streptomyces atrovirens. The genomic DNA G+C content was 73.98 mol% and the major fatty acid present was anteiso-C15:0 (36.19%). The growth and xylanase production of strain WJ-2 were significantly enhanced by using soytone and xylan as nitrogen and carbon sources, respectively. Crude enzyme preparations from the culture broth of strain WJ-2 exhibited maximal total xylanase activities at pH 7.0 and $55^{\circ}C$. Thin-layer chromatography analysis revealed that the crude enzyme degrades beechwood xylan to yield xylobiose and xylotriose as the principal hydrolyzed end products.

Effects of Extracts of Five Species of Korean Native Forest Plants on Lipid Accumulation and Reactive Oxygen Species Production during Differentiation of 3T3-L1 Preadipocytes (3T3-L1 세포분화 중 지방축적 및 활성산소종 생성에 대한 국내 산림자원 5종 추출물의 효과)

  • Choi, Sun-Il;Lee, Jong Seok;Lee, Sarah;Lee, Hye Jin;Yeo, Joohong;Cho, Bong-Yeon;Lee, Jin-Ha;Kim, Jae-Min;Jung, Tae-Dong;Choi, Seung-Hyun;Kim, Jong-Yea;Kang, Suk-Nam;Lee, Ok-Hwan
    • Journal of the Korean Society of Food Science and Nutrition
    • /
    • v.46 no.4
    • /
    • pp.523-528
    • /
    • 2017
  • This study investigate the effects of extracts of five species of Korean native forest plants on lipid accumulation and reactive oxygen species (ROS) production during the differentiation of 3T3-L1 cells. Our results show that Korean native forest plants extracts significantly reduced lipid accumulation and ROS production during adipogenesis in 3T3-L1 cells. Especially, Rubus coreanus Miq. was most effective in the inhibition of lipid accumulation and ROS production at a concentration of $100{\mu}g/mL$. Moreover, Rubus coreanus Miq. extracts significantly inhibited adipocyte differentiation, which is dependent on down-regulation of peroxisome proliferator-activated receptor gamma, CCAAT/enhancer-binding protein alpha, and adipocyte-specific fatty acid binding protein, a key adipogenic transcription factor. Therefore, these results suggest that Rubus coreanus Miq. might be a valuable source of bioactive compounds with anti-adipogenic activity.

Carpinus turczaninowii extract modulates arterial inflammatory response: a potential therapeutic use for atherosclerosis

  • Son, Youn Kyoung;Yoon, So Ra;Bang, Woo Young;Bae, Chang-Hwan;Yeo, Joo-Hong;Yeo, Rimkyo;An, Juhyun;Song, Juhyun;Kim, Oh Yoen
    • Nutrition Research and Practice
    • /
    • v.13 no.4
    • /
    • pp.302-309
    • /
    • 2019
  • BACKGOURND/OBJECTIVES: Vascular inflammation is an important feature in the atherosclerotic process. Recent studies report that leaves and branches of Carpinus turczaninowii (C. turczaninowii) have antioxidant capacity and exert anti-inflammatory effects. However, no study has reported the regulatory effect of C. turczaninowii extract on the arterial inflammatory response. This study therefore investigated modulation of the arterial inflammatory response after exposure to C. turczaninowii extract, using human aortic vascular smooth muscle cells (HAoSMCs). MATERIALS/METHODS: Scavenging activity of free radicals, total phenolic content (TPC), cell viability, mRNA expressions, and secreted levels of cytokines were measured in LPS-stimulated (10 ng/mL) HAoSMCs treated with the C. turczaninowii extract. RESULTS: C. turczaninowii extract contains high amounts of TPC ($225.6{\pm}21.0mg$ of gallic acid equivalents/g of the extract), as well as exerts time-and dose-dependent increases in strongly scavenged free radicals (average $14.8{\pm}1.97{\mu}g/mL$ $IC_{50}$ at 40 min). Cell viabilities after exposure to the extracts (1 and $10{\mu}g/mL$) were similar to the viability of non-treated cells. Cytokine mRNA expressions were significantly suppressed by the extracts (1 and $10{\mu}g/mL$) at 6 hours (h) after exposure. Interleukin-6 secretion was dose-dependently suppressed 2 h after incubation with the extract, at $1-10{\mu}g/mL$ in non-stimulated cells, and at 5 and $10{\mu}g/mL$ in LPS-stimulated cells. Similar patterns were also observed at 24 h after incubation with the extract (at $1-10{\mu}g/mL$ in non-stimulated cells, and at $10{\mu}g/mL$ in the LPS-stimulated cells). Soluble intracellular vascular adhesion molecules (sICAM-1) secreted from non-stimulated cells and LPS-stimulated cells were similarly suppressed in a dose-dependent manner after 24 h exposure to the extracts, but not after 2 h. In addition, sICAM-1 concentration after 24 h treatment was positively related to IL-6 levels after 2 h and 24 h exposure (r = 0.418, P = 0.003, and r = 0.524, P < 0.001, respectively). CONCLUSIONS: This study demonstrates that C. turczaninowii modulates the arterial inflammatory response, and indicates the potential to be applied as a therapeutic use for atherosclerosis.

Evaluation of Biohydrogen Production Using Various Inoculum Sources (다양한 접종원을 이용한 바이오수소 생산 평가)

  • Geumhee, Kim;Jiho, Lee;Hyoju, Yang;Yun-Yeong, Lee;Yoonyong, Yang;Sungho, Choi;Moonsuk, Hur;Byounghee, Lee;Kyung-Suk, Cho
    • Microbiology and Biotechnology Letters
    • /
    • v.50 no.4
    • /
    • pp.557-562
    • /
    • 2022
  • In this study we evaluated biohydrogen production potential as operational parameters (substrate, salt concentration, and temperature) using eight inoculum sources. While the volumetric biohydrogen production rate was significantly affected by temperature and inoculum sources, substrate and salt concentration did not have a significant effect on the biohydrogen production. Mesophilic temperature (37℃) was also found more appropriate for the hydrogen production than thermophilic temperature (50℃). Rate, while the eight inoculum sources, anaerobic digestion sludge exhibited the fastest biohydrogen production. The maximum production rate from anaerobic digestion sludge was 2,729 and 1,385 ml-H2·l-1·d-1 at mesophilic and thermophilic temperature, respectively.