• 미생물학회지
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• 제38권4호
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• pp.299-305
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• 2002

2001년 경북지역의 설사환자로부터 분리된, Salmonella Enteritidis SY9 균주로부터 ampicillin, chloramphenicol, sulfonamide, streptomycin, tetracycline에 내성을 가지는 40 kb plasmid를 분리하였다. pCAST2 라고 명명한 이 다제내성 plasmid로부터 sulfonamide, streptomycin, tetracycline 내성유전자를 가지는 약 7 kb의 Sacl 단편을 클로닝 하였다. 이 7 kb 단편 염기서열의 내성유전자의 구조는 sulII-strA-strB-tetR-tetA의 집락으로 기존에 보고되지 않은 새로운 유전자 배열을 나타내었다. 본 연구에서는 내성유전자 집락을 검출할수 있는 primer를 제작하여 PCR 분석을 통해서 이들 구조를 탐지할 수 있는 방법을 제시하였다. 또한 PCR 분석을 통한 구조 비교로, 이 집락이 2002년 8월에 경북지역에서 산발적으로 발생한 Salmonella 균주에서도 발견됨을 확인하였다.

• Asian-Australasian Journal of Animal Sciences
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• 제29권4호
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• pp.564-570
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• 2016

The Sal-like 1 gene (Sall1) is essential for kidney development, and mutations in this gene result in abnormalities in the kidneys. Mice lacking Sall1 show agenesis or severe dysgenesis of the kidneys. In a recent study, blastocyst complementation was used to develop mice and pigs with exogenic organs. In the present study, transcription activator-like effector nuclease (TALEN)-mediated homologous recombination was used to produce Sall1-knockout porcine fibroblasts for developing knockout pigs. The vector targeting the Sall1 locus included a 5.5-kb 5' arm, 1.8-kb 3' arm, and a neomycin resistance gene as a positive selection marker. The knockout vector and TALEN were introduced into porcine fibroblasts by electroporation. Antibiotic selection was performed over 11 days by using $300{\mu}g/mL$ G418. DNA of cells from G418-resistant colonies was amplified using polymerase chain reaction (PCR) to confirm the presence of fragments corresponding to the 3' and 5' arms of Sall1. Further, mono- and bi-allelic knockout cells were isolated and analyzed using PCR-restriction fragment length polymorphism. The results of our study indicated that TALEN-mediated homologous recombination induced bi-allelic knockout of the endogenous gene.

• 농업과학연구
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• 제44권1호
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• pp.30-39
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• 2017

This study was performed to produce succinic acid from biomass by developing mutants of Cellulomonas flavigena in which the succinate dehydrogenase gene (sdh) is deleted. For development of succinate producing mutants, the upstream and downstream regions of sdh gene from C. flavigena and antibiotic resistance gene (neo, bla) were inserted into pKC1139, and the recombinant plasmids were transformed into Escherichia coli ET12567/pUZ8002 which is a donor strain for conjugation. C. flavigena was conjugated with the transformed E. coli ET12567/pUZ8002 to induce the deletion of sdh in chromosome of this bacteria by double-crossover recombination. Two mutants (C. flavigena H-1 and H-2), in which sdh gene was deleted in the chromosome, were constructed and confirmed by PCR. To estimate the production of succinic acid by the two mutants when the culture broth was fermented with biomass such as CMC, xylan, locust gum, and rapeseed straw; the culture broth was analyzed by HPLC analysis. The succinic acid in the culture broth was not detected as a fermentation products of all biomass. One of the reasons for this may be the conversion of succinic acid to fumaric acid by sdh genes (Cfla_1014 - Cfla_1017 or Cfla_1916 - Cfla_1918) which remained in the chromosomal DNA of C. flavigena H-1 and H-2. The other reason could be the conversion of succinyl-CoA to other metabolites by enzymes related to the bypass pathway of TCA cycle.

• 한국식품과학회지
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• 제47권1호
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• pp.126-131
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• 2015

본 연구에서는 한국의 전통적인 식품인 비빔밥에서 2005년에서 2011년에 분리한 대장균에 대한 특성을 연구하였다. 전체 1,142건의 비빔밥에서 84 균주(7.4%)의 대장균이 분리되었다. 분리한 균주의 항생제 내성 분석 및 다제 내성 패턴은 ampicillin의 내성이 가장 높았으며 6 균주(7.2%)에서는 다제 내성을 보였다. 분리한 균주의 병원성 유전자 13종의 유무를 확인한 결과 5 균주(5.9%)에서 ent 유전자를 보유하여 STEC/EPEC 형의 대장균으로 분류되었다. 그러나 EIEC, EAEC, ETEC 형은 검출되지 않았다. 병원성 유전자가 검출되지 않은 대장균에 대한 혈청형은 O103 (1.2%), O91 (1.2%), O128 (6.0%)으로 확인되었고 O26, O157, O145, O111, O121 혈청형은 없었다. 동일한 O 혈청형 균주는 독소 유전자를 가지고 있는 것과 없는 것이 동시에 있다고 보고 되어 있고 혈청형으로 병원성 유전자를 구분하는 것은 균주의 특성에 따라 차이가 많이 나므로 향후 연구가 필요하다. 위해 요소가 있는 균주에 대해서 유전적 상동성을 시험한 결과 균주의 상동성이 낮아서 서로 다른 오염원에서 분리 되었음을 유추 할 수 있었다. 비빔밥은 다양한 재료를 사용하며 제조 과정이 복잡하기 때문에 대장균에 의한 오염의 가능성이 매우 높은 식품이다. 그러므로 원재료부터 완성까지 위생적으로 철저하게 조리해야 하며 교차 오염 방지 및 관리를 통해 안심하고 섭취할 수 있도록 해야 한다.

• 대한본초학회지
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• 제35권3호
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• pp.47-54
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• 2020

Objective : Infectious diseases are a growing problem worldwide by Methicillin-resistant Staphylococcus aureus (MRSA). Daehwangmokdan-tang is one of the oriental medicine prescriptions contained in Principles and Practice of Eastern Medicine. This study investigated the antibacterial activity of EtOH 70% extracts of Daehwangmokdan-tang (DMT) which prescription is composed of oriental medicine against MRSA. Methods : The antimicrobial activity and active concentration of MRSA were verified by measuring the minimum inhibitory concentration (MIC) of DMT. In addition, the effects of the disease were checked by treating the existing antibiotics and large ethanol extract in parallel, and the extent of growth suppression was checked over time. In addition, cell membrane permeability experiment confirmed the effect of large DMT on the immunity mechanism of MRSA. Results : TThe minimum inhibitory concentration of DMT against MRSA is 500 ~ 2000 ㎍/㎖ by broth dilution method. In the checkerboard method, the combinations of DMT with antibiotics has partial synergistic effect or synergy effect and DMT markedly reduced the MICs of the antibiotics oxacillin (OX), gentamicin (GEN) against MRSA. In the inhibition of resistance mechanism of DMT against MRSA, the expression of resistance gene and protein about β-lactam antibiotic was reduced. Also, we observed the effect of DMT about cell membrane permeability against MRSA, and confirmed that DMT suppressed growth of strains by increasing cell membrane permeability and energy metabolism. Conclusion : Basis on the result, we speculate that DMT may be useful for the treatment of MRSA infections when used in combination with β-lactam antibiotic.

• 한국수산과학회지
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• 제47권3호
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• pp.247-254
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• 2014

To investigate the acquisition of quinolone resistance, we examined mutations in the quinolone resistance-determining region (QRDR) of type II topoisomerase genes in ciprofloxacin (CIP)-resistant clinical isolates and in vitro mutants of Streptococcus parauberis. The CIP-resistant clinical isolates had one base change responsible for a Ser-79${\rightarrow}$Thr in the QRDR of parC. However, the CIP-resistant in vitro mutants had an altered QRDR of parC (Ser-79${\rightarrow}$Ile) that differed from that of the isolates. None of the CIP-resistant S. parauberis clinical isolates or in vitro mutants exhibited amino acid changes in gyrA or gyrB. However, even though involvement in the increased resistance was not clear, an Arg-449${\rightarrow}$Ser mutation outside of the QRDR of parE was detected in CIP-resistant mutant 2P1. These results suggest that the topoisomerase IV gene, parC (and possibly parE, as well), is the primary ciprofloxacin target in S. parauberis. Additionally we established a high-resolution melting (HRM) assay capable of detecting the dominant mutation in four type II topoisomerase genes conferring ciprofloxacin resistance. These rapid and reliable assays may provide a convenient method of surveillance for genetic mutations conferring antibiotic resistance.

• Journal of Microbiology and Biotechnology
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• 제25권1호
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• pp.98-108
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• 2015

Staphylococcus aureus is an important foodborne pathogen that causes diverse diseases ranging from minor infections to life-threatening conditions in humans and animals. To further understand its pathogenesis, the genome of the strain S. aureus FORC_001 was isolated from a contaminated food. Its genome consists of 2,886,017 bp double-stranded DNA with a GC content of 32.8%. It is predicted to contain 2,728 open reading frames, 57 tRNAs, and 6 rRNA operons, including 1 additional 5S rRNA gene. Comparative phylogenetic tree analysis of 40 complete S. aureus genome sequences using average nucleotide identity (ANI) revealed that strain FORC_001 belonged to Group I. The closest phylogenetic match was S. aureus MRSA252, according to a whole-genome ANI (99.87%), suggesting that they might share a common ancestor. Comparative genome analysis of FORC_001 and MRSA252 revealed two non-homologous regions: Regions I and II. The presence of various antibiotic resistance genes, including the SCCmec cluster in Region I of MRSA252, suggests that this strain might have acquired the SCCmec cluster to adapt to specific environments containing methicillin. Region II of both genomes contains prophage regions but their DNA sequence identity is very low, suggesting that the prophages might differ. This is the first report of the complete genome sequence of S. aureus isolated from a real foodborne outbreak in South Korea. This report would be helpful to extend our understanding about the genome, general characteristics, and virulence factors of S. aureus for further studies of pathogenesis, rapid detection, and epidemiological investigation in foodborne outbreak.

• 한국식품위생안전성학회지
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• 제16권3호
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• pp.159-167
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• 2001

집단식중독 환자에서 분리한 Staphylococcus aureus에 대한 항생제 감수성, enterotoxin 형별을 PCR로 조사한 결과는 다음과 같았다. 1. 의심환자분변 413건중 105건(25.4%)에서 Staphylococcus aureus coagulase 양성 균주가 분리되었다. 2. enterotoxin 생산성을 PCR로 조사한 결과 총 45주(42.9%)에서 enterotoxin gene이 확인되었으며, 이 중 H형 단독생산주가 29주(64.4%)로 가장 많았으며. A형 단독생산주 5주(11.1%), A형 및 H형 혼합생산주 4주(8.9%), G형 생산주 2주(4.4%)및 I형 생산주 1주(2.2%)이었다. 3. 시험한 105주 중 48주(45.7%)에서 항생제 내성이 확인되었으며, 이 중 penicillin에 대한 내성이 38.1%로 가장 높았으며, ampicillin과 penicillin은 중등도 내성이 각각 42.9%, 61.0%이었다. chloramphenicol, clindamycin, methicillin. trimethoprim, vancomycin은 모두 감수성이었다. 또한 단제 내성이 85.4%를 차지하였으며, 2제 내성이 12.5%, 3제내성이 2.1%이었다.

• Journal of Microbiology and Biotechnology
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• 제29권3호
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• pp.500-505
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• 2019

Staphylococcus aureus is a round-shaped, gram-positive bacterium that can cause numerous infectious diseases ranging from mild infections such as skin infections and food poisoning to life-threatening infections such as sepsis, endocarditis and toxic shock syndrome. Various antibiotic-resistant strains of S. aureus have frequently emerged, threatening human lives significantly. Despite much research on the genetics of S. aureus, many of its genes remain unknown functionally and structurally. To counteract its toxins and to prevent the antibiotic resistance of S. aureus, our understanding of S. aureus should be increased at the proteomic scale. SAV0927 was first sequenced in an antibiotic resistant S. aureus strain. The gene is a conserved hypothetical protein, and its homologues appear to be restricted to Firmicutes. In this study, we determined the crystal structure of SAV0927 at $2.5{\AA}$ resolution. The protein was primarily dimeric both in solution and in the crystals. The asymmetric unit contained five dimers that are stacked linearly with ${\sim}80^{\circ}$ rotation by each dimer, and these interactions further continued in the crystal packing, resulting in a long linear polymer. The crystal structures, together with the network analysis, provide functional implications for the SAV0927-mediated protein network.

• 대한임상검사과학회지
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• 제51권3호
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• pp.294-300
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• 2019

국내시판 김치로부터 분리한 probiotics의 병원생 미생물에 대한 억제효과와 항균제 내성을 조사하기 위해 35종의 국내시판 김치에서 총 140주의 probiotics를 분리하였으며, 16S rRNA 염기서열 분석을 통해 L. plantarum이 53주(37.9%), E. faecium 27주(19.3%) 그리고 L. rhamnosus 7주(5.0%) 순으로 동정되었고, 12종(species)의 다양한 병원성 미생물 즉 S. Typhi, S. Enteritidis, E. coli O157:H7, S. flexneri, NAG Vibrio, L. monocytogenesis, Y. enterocolitica, S. aureus, S. pyogenes, G. vaginalis, C. albicans, P. acne에 대한 전체적인 항균성은 69주(49.3%)이었으며, 균종별로 살펴보면 L. plantarum 75.5%, L. sakei 66.7%, E. faecium 40.7%, 그리고 L. rhamnosus 28.6% 순이었다. 또한 디스크 확산법에 의한 18종의 다양한 계열의 항균제에 대한 내성시험 결과 nalidixic acid가 98.6%의 내성을, S 83.6%, gentamicin 75.7%, vancomycin 73.6%, norfloxacin 72.1%, 그리고 ciprofloxacin 67.9% 순으로 나타났다. 결론적으로 본 실험에서 다양한 항균활성과 광범위한 항생제 내성을 지닌 L. plantarum, L. sakei, 그리고 E. faecium 균주가 장기 항생제 치료환자에 대한 유용한 설사 치료용 및 Candida 속이 야기하는 여성질염 치료제로서의 사용이 유용할 것으로 생각된다.