• Proceedings of the Korean Society of Crop Science Conference
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• 2022.10a
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• pp.207-207
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• 2022

Eating and cooking quality (ECQ) is one of the most complex quantitative traits in rice. The understanding of genetic regulation of transcript expression levels attributing to phenotypic variation in ECQ traits is limited. We integrated whole-genome resequencing, transcriptome, and phenotypic variation data from 84 Japonica accessions to build a transcriptome-wide association study (TWAS) based regulatory network. All ECQ traits showed a large phenotypic variation and significant phenotypic correlations among the traits. TWAS analysis identified a total of 285 transcripts significantly associated with six ECQ traits. Genome-wide mapping of ECQ-associated transcripts revealed 66,905 quantitative expression traits (eQTLs), including 21,747 local eQTLs, and 45,158 trans-eQTLs, regulating the expression of 43 genes. The starch synthesis-related genes (SSRGs), starch synthase IV-1 (SSIV-1), starch branching enzyme 1 (SBE1), granule-bound starch synthase 2 (GBSS2), and ADP-glucose pyrophosphorylase small subunit 2a (OsAGPS2a) were found to have eQTLs regulating the expression of ECQ associated transcripts. Further, in co-expression analysis, 130 genes produced at least one network with 22 master regulators. In addition, we developed CRISPR/Cas9-edited glbl mutant lines that confirmed the role of alpha-globulin (glbl) in starch synthesis to validate the co-expression analysis. This study provided novel insights into the genetic regulation of ECQ traits, and transcripts associated with these traits were discovered that could be used in further rice breeding.

• Journal of the Korean Society of Tobacco Science
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• v.16 no.1
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• pp.34-42
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• 1994

Experiments on the variability of plant type and factors representing the productivity and quality of the cultivars were subsequently carried out in relation to different plant density. Results are summarized as below. The higher was the plant density, the greater was the plant height and mean leaf inclination(MLI). As the plant density increased, the horizontal leaf area distribution became greater in proximal to the stem in NTN 77 and Br.49 but evenly in distal part in Br.21. Meanwhile, in terms of vertical leaf area distribution, it was decreased much more in middle and lower leaves than in upper in NTN 77 and Br.49 although it steadily decreased in any part of the plant in Br.21. Br.49 was the largest but Br.21 and NTN 77 were similar with respect to both CGR and NAR. The yield was greater in larger MLI cultivars(NTN 77>Br.49>Br.21). These three characteristics became greater when the tobacco were planted more densely in the field. Dry leaf weight and dry matter weight per plant were heavier in the larger MLI and increased with lower plant density. Total nitrogen content was greater in lower plant density and larger MLI cultivar. The plant density increases filling power seems to be enhanced regardless to the plant type. There was no discernible tendency on combustibility according to the plant density or plant type.

• Journal of Plant Biotechnology
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• v.47 no.1
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• pp.46-52
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• 2020

This experiment study aimed to identify the continuous genetic variation caused by benzyladenine (BA) treatment in strawberry tissue culture. The 'Goha' cultivar was used and treated with different concentrations of BA (0.0, 0.5, 1.0, 2.0 mg·L^-1). Morphological and genetic variation tests were performed, and genetic continuity tests were performed for three years. The morphological variation induced by BA was distinctively high (10.5 ~ 20.0%) and the genetic variation was 7.0 ~ 15.0%, 1.8 ~ 10.0%, and 5.0% in the first, second, and third year of cultivation, respectively. The rate of genetic variation decreased with increasing cultivation years. In addition, genetic variation caused by BA 1.0 mg·L^-1 and BA 2.0 mg·L^-1 occurred in the first and second years of cultivation, whereas only BA 2.0 mg·L^-1 caused genetic variation in the third year of cultivation. Therefore, a concentration of less than 1.0 mg·L^-1 BA was used for the propagation of strawberry tissue culture plants, and it was necessary to identify their variation.

• The KSFM Journal of Fluid Machinery
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• v.19 no.3
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• pp.33-36
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• 2016

The investigation on the verification of availability simulation for small-scale plant has been carried out. This study focuses on the availability variation induced by number of equipment and iteration with failure density function. The equipment classification of small-scale plant and failure type and the methodologies on Monte-Carlo simulation are established. The availability deviation with programs showed under Max. 1.7% for the case of normal function. This method could be used to availability evaluation of small-scale plant, but calibration of the failure density function is necessary for general application.

• Molecules and Cells
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• v.40 no.11
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• pp.814-822
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• 2017

Meiotic homologous recombination generates new combinations of preexisting genetic variation and is a crucial process in plant breeding. Within the last decade, our understanding of plant meiotic recombination and genome diversity has advanced considerably. Innovation in DNA sequencing technology has led to the exploration of high-resolution genetic and epigenetic information in plant genomes, which has helped to accelerate plant breeding practices via high-throughput genotyping, and linkage and association mapping. In addition, great advances toward understanding the genetic and epigenetic control mechanisms of meiotic recombination have enabled the expansion of breeding programs and the unlocking of genetic diversity that can be used for crop improvement. This review highlights the recent literature on plant meiotic recombination and discusses the translation of this knowledge to the manipulation of meiotic recombination frequency and location with regards to crop plant breeding.

• Transactions of the Korean Society of Machine Tool Engineers
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• v.14 no.1
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• pp.37-43
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• 2005

Plant pipe has a fatigue life which is induced by repeated stress come from the variation of temperature and pressure. To avoid the fatigue crack of plant pipe which is produced by long term repeated stress, plant operator has to limit the mont of operating transient. This paper introduced the study result about discrimination methodology of plant transient by using the fuzzy pattern recognition. As result of applying the fuzzy pattern recognition to actual plant operation data, it is confirmed that fuzzy pattern recognition methodology can be useful for the comparison of similarity for the transients of similar output but has different time pattern.

• Proceedings of the Korean Society of Agricultural Engineers Conference
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• 2000.10a
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• pp.327-332
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• 2000

This study was carried out to investigate the water requirement of green peppers which are cultivated in a greenhouse under the different soil water conditions. The meteorological conditions during the experiment period was not predominantly different from the conditions in a normal year. The highest leaf area per plant, plant height, and yield were 6,143$\textrm{cm}^2$/plant, 107cm, and 751g/plant, respectively. And daily variation of water requirements of green peppers ranged from 30 to 1,250g/d/plant which was fluctuated with significant difference. Total water requirements per plant which cultivated under the soil water conditions with different saturation ratios were 23,619g for P100, 43,044 for P80, and 2915g for P60, respectively. There were close correlation between plant height and water requirements. Low correlations were found between greenhouse ambient temperature and water requirement, while significant linear regression was shown between both of humidity and solar radiation and water requirement.

• Korean Journal of Environmental Biology
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• v.36 no.4
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• pp.463-470
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• 2018

Restoration ecology is the practical study of renewing and restoring a spoilt, degraded, or devastated ecosystems in the environment. Because the Korean industry has been drastically developed for the past few decades, the Korean ecosystem requires restoration using regional seed. In this study, we identified the variation of phylogenic relationship of Miscanthus sinensis or Phragmites australis by locations in Korea. Chloroplast DNA atpF-H and psbA-trnH interspace region were used as a molecular marker to resolve the phylogenic relationship in 10 different locations. We performed the molecular phylogenetic analysis with 10 chloroplast DNAs from each location using Kimura 2-parameter. The analysis of Miscanthus showed that all atpF-H genes were exact matches except for Ose san. In contrast to Mischanthus, the atpF-H genes from Phragmites were observed to have more variation. A total of 7 locations revealed the variation in chloroplast gene. According to the phylogenic tree in Phragmites, 2 of 10 samples in 6 locations and 3 of 10 in 1 location showed variation with 0.160-0.181 genetic distance. According to the genetic distance of the Miscanthus sinensis, there were no mutations in all regions except the Hongsung. These results support regional differences and show the necessity for seed collection by region. In the case of Phragmites australis, genetic variation occurred in all regions.

• KOREAN JOURNAL OF CROP SCIENCE
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• v.50 no.4
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• pp.238-246
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• 2005

Rice yield and protein content have been shown to be highly variable across paddy fields. In order to characterize this spatial variability of rice within a field, two-year experiments were conducted in 2002 and 2003 in a large-scale rice field of $6,600m^2$ In year 2004, an experiment was conducted to know if variable rate treatment (VRT) of N fertilizer, that was prescribed for site-specific management at panicle initiation stage, could reduce spatial variation in yield and protein content of rice while increasing yield compared to conventional uniform N topdressing (UN, 33kg N/ha at PIS) method. VRT nitrogen prescription for each grid was calculated based on the nitrogen (N) uptake (from panicle initiation to harvest) required for target rice protein content of $6.8\%$, natural soil N supply, and recovery of top-dressed N fertilizer. The required N uptake for target rice protein content was calculated from the equations to predict rice yield and protein content from plant growth parameters at panicle initiation stage (PIS) and N uptake from PIS to harvest. This model· equations were developed from the data obtained from the previous two-year experiments. The plant growth parameters for the calculation of the required N were predicted non-destructively by canopy reflectance measurement. Soil N supply for each grid was obtained from the experiment of year 2003, and N recovery was assumed to be $60\%$ according to the previous reports. The prescribed VRT N ranged from 0 to 110kg N/ha with an average of 57kg/ha that was higher than 33 kg/ha of UN. The results showed that VRT application successfully worked not only to reduce spatial variability of rice yield and protein content but also to increase rough rice yield by 960kg/ha. The coefficient of variation (CV) for rice yield and protein content was reduced significantly to $8.1\%$ and $7.1\%$ in VRT from $14.6\%$ and $13.0\%$ in UN, respectively. And also the average protein content of milled rice in VRT showed very similar value of target protein content of $6.8\%$. In conclusion the procedure used in this paper was believed to be reliable and promising method for reducing within-field spatial variability of rice yield and protein content. However, inexpensive, reliable, and fast estimation methods of natural N supply and plant growth and nutrition status should be prepared before this method could be practically used for site-specific crop management in large-scale rice field.

• Journal of Ecology and Environment
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• v.31 no.3
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• pp.207-211
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• 2008

We investigated the leaf demography of a temperate woody liana, Akebia trifoliata, in a temperate forest in Japan, Akebia is semi-evergreen: some leaves are shed before winter, while others remain through the winter. Previous studies of semi-evergreen species found that variation in leaf life span was caused by variation in the timing of leaf emergence, Leaves that appeared just before winter over-wintered, while leaves appearing earlier were shed, However, it is unclear whether leaves of the same cohort (i.e., leaves that appear at the same time within a single site) show variation in life span under the effect of strong seasonality. To separate variation in life span among the leaves in each cohort from variation among cohorts, we propose a new method - the single leaf diagram, which shows the emergence and death of each leaf. Using single leaf diagrams, our study revealed that Akebia leaves within a cohort showed substantial variation in life span, with some over-wintering and some not. In addition, leaves on small ramets in the understory showed great variation in life span, while leaves on large ramets, which typically reach higher positions in the forest canopy, have shorter lives, As a result, small ramets were semi-evergreen, whereas large ramets were deciduous, The longer lives of leaves on small ramets can be interpreted as a shade-adaptive strategy in understory plants.