• Journal of Plant Biotechnology
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• 제30권2호
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• pp.189-194
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• 2003

Contamination of bacterial infection is one of serious problems in in vitro culture system of root crops. From the contaminated tubes over 140 of petiole cultures of Pinellia ternata, a medicinal plant, 4 genera 8species 48 strains of bacteria, including Aeromonas and Pseudomonas, were isolated and identified and another 8 strains were not fully identified. Most of them were motile Gram positive bacteria as in common in early stage of in vitro cultures. Six strains of bacteria, 5 of Gram negative, including Enterobacter, and 1 of Gram positive, were identified from the embryonic axes cultures of tea plant. From the susceptibility test to pre-screened 5 antibiotics, all of the bacteria except for 2 species of Pseudomonas were susceptible to cefotaxime 60∼100mg/L. While 60mg/L erythromycin only was effective to Pseudomonas. Combination of erythromycin 20mg/L and cefotaxime 60mg/L totally suppressed the growth of all bacterial strains tested. Susceptibility test of bacteria from tea embryonic axes cultures showed similar results. Combination of erythromycin 35mg/L and cefotaxime 60mg/L was effective to 15 bacterial strains and partially effective to 1 unidentified.

• The Plant Pathology Journal
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• 제34권5호
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• pp.356-366
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• 2018

The red flour beetle, Tribolium castaneum, is one of the most common and economically important pests of stored cereal products worldwide. Furthermore, these beetles can act as vectors for several fungal post-harvest diseases. In this study, we collected T. castaneum from 49 rice processing complexes (RPCs) nationwide during 2016-2017 and identified contaminating fungal species on the surface of the beetles. Five beetles from each region were placed on potato dextrose agar media or Fusarium selection media after wet processing with 100% relative humidity at $27^{\circ}C$ for one week. A total of 142 fungal isolates were thus collected. By sequence analysis of the internal transcribed spacer region, 23 fungal genera including one unidentified taxon were found to be associated with T. castaneum. The genus Aspergillus spp. (28.9%) was the most frequently present, followed by Cladosporium spp. (12.0%), Hyphopichia burtonii (9.2%), Penicillium spp. (8.5%), Mucor spp. (6.3%), Rhizopus spp. (5.6%), Cephaliophora spp. (3.5%), Alternaria alternata (2.8%) and Monascus sp. (2.8%). Less commonly identified were genera Fusarium, Nigrospora, Beauveria, Chaetomium, Coprinellus, Irpex, Lichtheimia, Trichoderma, Byssochlamys, Cochliobolus, Cunninghamella, Mortierella, Polyporales, Rhizomucor and Talaromyces. Among the isolates, two known mycotoxin-producing fungi, Aspergillus flavus and Fusarium spp. were also identified. This result is consistent with previous studies that surveyed fungal and mycotoxin contamination in rice from RPCs. Our study indicates that the storage pest, T. castaneum, would play an important role in spreading fungal contaminants and consequently increasing mycotoxin contamination in stored rice.

• 수산해양교육연구
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• 제24권5호
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• pp.662-669
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• 2012

2008년부터 2009년까지 제주도 연안 해역에서 혼획 및 좌초 되는 바다거북의 모니터링을 실시하였다. 그 결과 푸른바다거북(C. mydas) 12마리, 붉은바다거북(C. caretta) 3마리, 매부리바다거북(E. imbricata) 1마리, 미확인 종 25마리 등 총 41마리의 바다거북이 2년 동안 제주도 연안 해역에서 관찰되었다. 월별 및 해역별로는 8월에 제주도 북서부 연안의 애월읍 해역에서 혼획 및 좌초 빈도가 높았고 2008년 보다 2009년도에 증가하는 경향을 나타내었다. 특히 제주도 북부 해안에 위치한 애월읍 연안 해역에서 연속적으로 출현 개체 수가 증가하는 것으로 보아 이 지역은 바다거북의 색이장 및 생육장이 되고 있을 것으로 추측된다. 어구별로는 정치망과 자망에서 주로 혼획 되었으며, 수동적 어구 형태인 정치망의 혼획이 높은 것으로 보아 먹이를 쫓아가다가 혼획되는 것으로 판단된다. 이번 연구를 통하여 앞으로도 제주도 연안 해역에 출현하는 바다거북의 개체수는 점차 증가할 것으로 예측되어 체계적인 모니터링 시스템 구축이 필요할 것으로 판단된다.

• The Plant Pathology Journal
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• 제30권1호
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• pp.51-57
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• 2014

A large-scale oligonucleotide (LSON) chip was developed for the detection of the plant viruses with known genetic information. The LSON chip contains two sets of 3,978 probes for 538 species of targets including plant viruses, satellite RNAs and viroids. A hundred forty thousand probes, consisting of isolate-, species- and genus-specific probes respectively, are designed from 20,000 of independent nucleotide sequence of plant viruses. Based on the economic importance, the amount of genome information, and the number of strains and/or isolates, one to fifty-one probes for each target virus are selected and spotted on the chip. The standard and field samples for the analysis of the LSON chip have been prepared and tested by RT-PCR. The probe's specific and/or nonspecific reaction patterns by LSON chip allow us to diagnose the unidentified viruses. Thus, the LSON chip in this study could be highly useful for the detection of unexpected plant viruses, the monitoring of emerging viruses and the fluctuation of the population of major viruses in each plant.

• 한국수산과학회지
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• 제36권5호
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• pp.486-494
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• 2003

Distribution of ichthyoplanktons and its relation to environmental factors (temperature, salinity, $chlorophyll\;\alpha$) around the Youngsan River Estuary of Mokpo, southwest coast of Korea were investigated based on the samples collected bimonthly from February to December, 2001. Unidentified fish eggs were most abundant $1,345\;eggs/100m^3$ in August, while eggs of Engraulis japonicus were most abundant $63\;eggs/100m^3$ in June. A total of forty species of fish larvae and juveniles belonging to the twenty families under six orders were caught, with six gobiids, four icefishes, four croakers and three herrings being represented. Fish larvae and juveniles peaked $17,757\;inds./100m^3$ in August, which consisted of $91.02\%$ of gobiids, $3.69\%$ of gunnels and $3.67\%$ of icefishes, and they were most abundant $7,467\;Inds./100m^3$ at St. 7. Cluster analysis based on the individuals of fish larvae and juveniles showed that six months were classified into two groups at the dissimilarity 70, the first was composed of June and August and the second was February and December and April and October were not clustered with any other months. In August when species diversity index was the highest, eight stations were classified into two groups at the dissimilarity 70, the first was composed of St. 1, 3, 4, 5 and 8 and the second was St. 6, 7 and 2. As a result from correspondence analysis, there is no effect of the environmental factors with a density of fish eggs and larvae, but correlation could be found between a density of fish eggs and $chlorophyll\;\alpha.$

• 환경생물
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• 제20권4호
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• pp.325-338
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• 2002

송지호, 쌍호, 매호, 향호 등 4개의 호소로부터 총 12개의 채집 정점을 선정하여 2001년 5월, 8월 그리고 11월 등 3회에 걸쳐서 식물플랑크톤의 종분포와 현존량을 조사하였다. 본 조사수역으로부터 출현한 식물플랑크톤의 종분포는 Engler의 분류체계에 따라 정리한 결과 총164 분류군이 출현하였으며, 이는 4문 4강 14목 26과 59속 139종 22변종 2품종 1미동정종으로 분류되었다. 이를 문별로 살펴보면 남조식물문이 31종 2변종으로 33분류군이 출현하였고,황갈조식물문의 규조강이 84종 16변종으로 총 100분류군이 출현하였다. 또한 유글레나식물문은 6종 1변종으로 7 분류군이 출현하였으며, 녹조식물문은 18종 3변종 2품종 1미동정종으로 총 24 분류군이 출현하였다. 각 정점의 우점종은 synedra fasciculata, Nitzschia amphibia, Cyclotella comta, Oscillatoria planctonica 등 5종의 규조류와 3종의 남조류로 나타났다. 아우점종은 Trachelomonas cervicula와 Spirogyra sp.를 제외하면 Nitzschia obtusa를 비롯하여 대부분이 규조류로 나타났다. 현존량은 조사된 4개의 석호에서 비교적 높은 값을 나타냈다. 본 연구수역에서 출현한 종 중 Oscillatoria chlorina등 16분류군이 오염수역에 분포하는 종으로 나타났다. 또한 청정수역에 분포하는 종으로는 Cocconeis placentula 1분류군이 출현하였다. 출현종 중 Microcystis nos-aquae 등 4종은 비릿한 냄새를 내서 악취를 낼 수 있는 종류들이다. 식물플랑크톤의 종분포와 현존량을 통하여 볼 때 조사 수역은 오염수역에 분포종이 다수 분포하며, 높은 현존량을 나타냄으로써 모두 부영양화된 수역으로 판단된다.

• 대한한의학회지
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• 제28권1호통권69호
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• pp.137-147
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• 2007

Objective : The objective of this study was to investigate the antioxidative effects of Carthami Flos extract. Methods : Total antioxidant status was examined by total antioxidant capacity(TAC) and total antioxidant response(TAR) against potent free radical reactions. The effect of Carthami Flos extract was examined far details of total phenolic content concentration at which 1,1-dipheny1-2-picrylhydrazyl(DPPH) radical scavenging activity was inhibited, the inhibitory effect on lipid peroxidation, and the effect on reactive oxygen species(ROS) generation. Results : TAC of Carthami Flos extract at the concentration of 5 mg/ml was 1.84 mM Trolox equivalent. 2. TAR of Carthami Flos extract, on the other hand, couldn't be determined due to interference from unidentified compounds. 3. Total phenolic content of Carthami Flos extract at the concentration of 5 mg/ml was 2.01 mM gallic acid equivalent. 4. Concentration of Carthami Flos extract at which DPPH radical scavenging activity was inhibited by 50% was 6.43 mg/ml as compared to 100% by Pyrogallol solution as a reference. 5. The inhibitory effect of the extract on lipid peroxidation was examined using rat liver mitochondria induced by FeS04/ascorbic acid. Carthami Flos extract at the concentration of 10 ms/ml slightly but significantly decreased TBARS concentration. The extract continued to prevent lipid peroxidation in a dose-dependent manner. 6. The effect of Carthami Flos extract on reactive oxygen species(ROS) generation was examined using a cell-free system induced by hydrogen peroxide/FeS04. Addition of 1 mg/ml of Carthami Flos extract significantly reduced dichlorofluorescein(DCF) fluorescence. Carthami Flos extract caused concentration-dependent attenuation of the increase in DCF fluorescence, indicating that the ektract significantly prevented ROS generation in vitro. Conclusion: : Antioxidant efffcts of Carffami ffor extract seem to be due, at least in part, to the prevention offree radical-induced oxidation, fellowed by inhibition of lipid peroxidation.

• 제어로봇시스템학회논문지
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• 제11권10호
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• pp.851-856
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• 2005

The DNA and protein data of diverse species have been daily discovered and deposited in the public archives according to each established format. Database systems in the public archives provide not only an easy-to-use, flexible interface to the public, but also in silico analysis tools of unidentified sequence data. Of such in silico analysis tools, multiple sequence alignment [1] methods relying on pairwise alignment and Smith-Waterman algorithm [2] enable us to identify unknown DNA, protein sequences or phylogenetic relation among several species. However, in the existing multiple alignment method as the number of sequences increases, the runtime increases exponentially. In order to remedy this problem, we adopted a parallel processing suffix tree algorithm that is able to search for common subsequences at one time without pairwise alignment. Also, the cross-matching subsequences triggering inexact-matching among the searched common subsequences might be produced. So, the cross-matching masking process was suggested in this paper. To identify the function of the clusters generated by suffix tree clustering, BLAST was combined with a clustering tool. Our clustering and annotating tool is summarized as the following steps: (1) construction of suffix tree; (2) masking of cross-matching pairs; (3) clustering of gene sequences and (4) annotating gene clusters by BLAST search. The system was successfully evaluated with 22 gene sequences in the pyrubate pathway of bacteria, clustering 7 clusters and finding out representative common subsequences of each cluster

• ALGAE
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• 제38권2호
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• pp.127-139
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• 2023

Cryptic stages of diverse macroalgae present in natural substrata, "the bank of microscopic forms", were isolated into clonal cultures and identified based on both morphological characteristics and DNA barcoding. Approximately 120 clonal isolates from 308 natural substratum samples were collected from the entire coastline of Kuwait. Amongst these isolates, 77 (64%) were identified through DNA barcoding using the nuclear ribosomal small subunit, RuBisCO spacer (ITS2, tufa, rbcL, psaA, and psbA) and sequencing. Twenty-six isolates (34%) were identified in the division Chlorophyta, 18 (23%) as Phaeophyceae, and 33 (43%) as Rhodophyta. For all DNA sequences in this study, species-level cut off applied was ≥98% homology which depend entirely on the markers used. Three putative new records of Chlorophyta new for the Arabian Gulf were made: Cladophora laetevirens (Dillwyn) Kützing, Ulva torta (Mertens) Trevisan and Ulvella leptochaete (Huber) R. Nielsen, C. J. O'Kelly & B. Wysor in Nielsen, while Cladophora gracilis Kützing and Ulva ohnoi M. Hiraoka & S. Shimada are new records for Kuwait. For Phaeophyceae, Ectocarpus subulatus Kützing and Elachista stellaris Areschoug were new records for the Gulf and Kuwait. In the Rhodophyta, Acrochaetium secundatum (Lyngbye) Nägeli in Nägeli & Cramer, Ceramium affine Setchell & N. L. Gardner, Gelidium pusillum var. pakistanicum Afaq-Husain & Shameel and Dasya caraibica Børgesen are new records for the Gulf and Kuwait, while the red alga Stylonema alsidii (Zanardini) K. Drew is a new record for Kuwait. Several isolates identified corresponded to genera not previously reported in Kuwait and / or the Arabian Gulf, such as Porphyrostromium Trevisan, a new genus from the Bangiales, and two unidentified species for the Planophilaceae Škaloud & Leliaert. The isolates cultivated from substrata enhance understanding of the marine macroalgal diversity in the region and confirmed that the Germling Emergence Method is suitable for determining the actual diversity of a given study area through isolation from cryptic life-history phases.

• 식물병연구
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• 제30권2호
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• pp.114-123
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• 2024

In July 2022, stem rot symptom was found in a peony plant grown in a pot under a greenhouse at Jinju, Gyeongnam Province, South Korea. Two fungal species were isolated from the infected peony stems and cultured on 1/2-strength potato dextrose agar for identification. The morphological characteristics of the fungal isolates were examined, and nucleotide sequences of the internal transcribed spacer region, β-tubulin and translation elongation factor 1-α were analysed. The pathogenicity of the two isolates was confirmed in detached peony leaves, according to Koch's postulates. To our knowledge, this is the report of Neopestalotiopsis clavispora and Sclerotinia sclerotiorum as the causal agents of peony stem rots. Antifungal activity of chemical fungicide propineb and rhizobacterium Bacillus siamensis H30-3 was shown against the two plant pathogenic fungi N. clavispora and S. sclerotiorum.Unidentified diffusible and volatile compounds from B. siamensis H30-3 could suppress in vitro mycelial growths of N. clavispora JJ 8-2-1 and S. sclerotiorum JJ 8-2-2.