• Title/Summary/Keyword: Relation Function Structure

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Z-DNA-Containing Long Terminal Repeats of Human Endogenous Retrovirus Families Provide Alternative Promoters for Human Functional Genes

  • Lee, Du Hyeong;Bae, Woo Hyeon;Ha, Hongseok;Park, Eun Gyung;Lee, Yun Ju;Kim, Woo Ryung;Kim, Heui-Soo
    • Molecules and Cells
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    • v.45 no.8
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    • pp.522-530
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    • 2022
  • Transposable elements (TEs) account for approximately 45% of the human genome. TEs have proliferated randomly and integrated into functional genes during hominoid radiation. They appear as right-handed B-DNA double helices and slightly elongated left-handed Z-DNAs. Human endogenous retrovirus (HERV) families are widely distributed in human chromosomes at a ratio of 8%. They contain a 5'-long terminal repeat (LTR)-gag-pol-env-3'-LTR structure. LTRs contain the U3 enhancer and promoter region, transcribed R region, and U5 region. LTRs can influence host gene expression by acting as regulatory elements. In this review, we describe the alternative promoters derived from LTR elements that overlap Z-DNA by comparing Z-hunt and DeepZ data for human functional genes. We also present evidence showing the regulatory activity of LTR elements containing Z-DNA in GSDML. Taken together, the regulatory activity of LTR elements with Z-DNA allows us to understand gene function in relation to various human diseases.

CFD Analysis on the Continuous and Variable Damping Characteristics of a Semi-Active Shock Absorber (반능동형 충격흡수기의 연속가변 감쇠특성에 대한 CFD 해석)

  • 윤준원
    • Transactions of the Korean Society of Automotive Engineers
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    • v.12 no.2
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    • pp.101-108
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    • 2004
  • Recently, a semi-active shock absorber has been taking interest because of its low cost and simple structure than the active one. CFD analysis has been conducted to investigate the continuous and variable damping characteristics of the semi-active shock absorber. Also, the flow resistance characteristics of a spool valve has been examined to identify individual parameters(namely, exponent and discharge coefficient) of pressure-flow rate relation needed for the accurate valve modeling. The flow field in the damping valve was simulated using the commercial code, CFX-5.3. The numerical results showed reasonable agreement with the experimental outputs. The pressure distribution with the variation of spool opening length and volume flow rate were discussed in detail. And the continuous and variable damping performance was found clearly. The individual parameters of spool valve were obtained as a function of orifice area. The exponent and discharge coefficient were fitted in with the first and the third polynomial respectively.

Histopathologic and Physiologic Features of the Aging Larynx (노인성 후두의 조직병리학적, 생리학적 특성)

  • Park, Il-Seok
    • Journal of the Korean Society of Laryngology, Phoniatrics and Logopedics
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    • v.25 no.1
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    • pp.20-23
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    • 2014
  • Age-related changes in larynx can have a direct impact on voice quality and general comfort level. Observations of vocal aging have spanned perceptual, acoustic, aerodynamic, physical, electromyographic (EMG) and histological levels. Evidence of differential vocal aging in relation to gender and physical condition has been reported. Perceptual, acoustic, aerodynamic, kinematic, EMG and histological data document age-related changes in laryngeal structure and function with advancing age. These changes contribute to a functional age-related impact of vocal hypofunction or compensatory hyperfunction. This review will focus on the current understanding of the clinical and cellular changes in the larynx that lead to presbyphonia.

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IMC-PID Controller Tuning using Loop Shaping Method (루프 형성 기법을 이용한 IMC-PID 제어기 동조)

  • Kim, Chang-Hyun;Lim, Dong-Kyun;Suh, Byung-Suhl
    • Proceedings of the KIEE Conference
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    • 2004.11c
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    • pp.95-97
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    • 2004
  • This paper proposed new IMC-PID controller design method that use loop shaping method. It could consider such design specifications as gain margin, phase margin, sensitivity function etc by appling the loop shaping method for tuning IMC-PID controller whose structure has only one design parameter and guarantees internal stability. To shape desirable loop gain, the relation between these design specification and parameter is derived by mathematical basis. And the availability of proposed in this paper tuning method that can regard design specifications is checked through example comparison and analysis.

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Numerical Study for Mixing Characteristics of an Oscillating Micro-stirrer (미소진동교반기의 혼합특성에 대한 수치적 연구)

  • Kim, Yong-Dae;Maeng, Joo-Sung
    • 유체기계공업학회:학술대회논문집
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    • 2006.08a
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    • pp.309-312
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    • 2006
  • Effective mixing is an important problem in microfluidics for chemical and biomechanical applications. In this study, the influences of the Reynolds number and the oscillating frequency on mixing characteristics of micro-stirrer are studied in a microchannel with single stirrer. The influence of fluid inertial effects in an active mixer is first discussed. It is found that the stirring effects by stirrer oscillation are promptly attenuated at low Reynolds number, which makes greatly difficult the rapid mixing. As the inertial effects are increased, the chaotic advection is generated and then developed. The mixing phase is finally developed some mushroom shaped structure. And the mixing efficiency is also studied as a function of the oscillating frequency. We found that the mixing efficiency does not always increase with higher oscillating frequency of stirrer. Consequently, we found the functional relation between the optimal frequency of a stirrer and the Reynolds number.

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Moments calculation for truncated multivariate normal in nonlinear generalized mixed models

  • Lee, Seung-Chun
    • Communications for Statistical Applications and Methods
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    • v.27 no.3
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    • pp.377-383
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    • 2020
  • The likelihood-based inference in a nonlinear generalized mixed model often requires computing moments of truncated multivariate normal random variables. Many methods have been proposed for the computation using a recurrence relation or the moment generating function; however, these methods rely on high dimensional numerical integrations. The numerical method is known to be inefficient for high dimensional integral in accuracy. Besides the accuracy, the methods demand too much computing time to use them in practical analyses. In this note, a moment calculation method is proposed under an assumption of a certain covariance structure that occurred mostly in generalized mixed models. The method needs only low dimensional numerical integrations.

A Geometrical Structural Model of 2:1 Trioctahedral Clay Minerals (2:1 삼팔면체 점토광물의 기하학적 구조모델)

  • 유재영
    • Journal of the Mineralogical Society of Korea
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    • v.4 no.2
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    • pp.90-98
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    • 1991
  • This study introduces a new structural model of 1M 2:1 trioctahedral clay minerals or, more generally, 2:1 trioctahedral phyllosilicates. The structural model requires only the chemical formulae of the clay minerals as an input and uses the regression relation (Radoslovich, 1962) to calculate the a- and b-dimensions of the phyllosilicates with the given chemical formulae. The atomic coordinates of the constituent atoms are geometrically calculated for C2/m space group under the assumption that the interatomic distances are constant. To determine the c-dimension, this study calculates the binding energies of 1M 2:1 trioctahedral phyllosilicates as a function of d(001) and find the minimum energy producing d(001). The structural model generates the cell dimensions, interaxial angles, interatomic distances, octahedral, tetrahedral and interlayer thickness, polyhedron deformation angles and atomic coordinates in the unit cell. The simulated structural parameters of phlogopite and annite are very close to the reported data by Hazen and Burnham (1973), suggesting that the structure simulation using only the chemical formule is successful, and thus, that the structural model of this study overcomes the difficulties in the previous models by other investigators.

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Wavelet-Based Fuzzy Modeling Using a DNA Coding Method (DNA 코딩 기법을 이용한 웨이브렛 기반 퍼지 모델링)

  • Lee, Yeun-Woo;Yu, Jin-Young;Joo, Young-Hoon;Park, Jin-Bae
    • Proceedings of the KIEE Conference
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    • 2003.07d
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    • pp.2040-2042
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    • 2003
  • In this paper, we propose a new method about wavelet-based fuzzy modeling using a DNA coding method. DNA coding techniques is known that expression of knowledge is various than Genetic Algorithm(GA) usually by made optimization technique because done base in structure of biologic DNA and optimization performance is superior. The reposed method make fuzzy system model in wavelet transform and equivalence relation after identification with coefficient of wavelet transform using a DNA coding techniques. Also, can get fuzzy model effectively of nonlinear system using advantage of strong wavelet transform about function that have sudden change. In this paper, in order to demonstrate the superiority of the proposed method compared with GA.

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A Tale of the Tail : A Comprehensive Understanding of the "Human Tail"

  • Tojima, Sayaka
    • Journal of Korean Neurosurgical Society
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    • v.64 no.3
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    • pp.340-345
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    • 2021
  • Humans do not have tails; however, a congenital anomaly named "human tail" has been recognized since old times. In contrast with its impactful name, the anomaly itself is not fatal, and thus it has not been considered as a clinically serious symptom. However, many case reports suggested that retention of "the tail" is closely associated with spinal cord malformation and should be treated with care by neurosurgeons. Therefore, this review summarizes our knowledge regarding the anatomy, function, and development of the tail as a general structure in mammals. Learning the basic knowledge regarding tail anatomy and development would help clinicians to understand the "human tail" more concisely and to select more appropriate examinations or treatments in relation to this congenital anomaly.

Earthquake risk assessment of seismically isolated extradosed bridges with lead rubber bearings

  • Kim, Dookie;Yi, Jin-Hak;Seo, Hyeong-Yeol;Chang, Chunho
    • Structural Engineering and Mechanics
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    • v.29 no.6
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    • pp.689-707
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    • 2008
  • This study presents a method to evaluate the seismic risk of an extradosed bridge with seismic isolators of lead rubber bearings (LRBs), and also to show the effectiveness of the LRB isolators on the extradosed bridge, which is one of the relatively flexible and lightly damped structures in terms of seismic risk. Initially, the seismic vulnerability of a structure is evaluated, and then the seismic hazard of a specific site is rated using an earthquake data set and seismic hazard maps in Korea. Then, the seismic risk of the structure is assessed. The nonlinear seismic analyses are carried out to consider plastic deformation of bridge columns and the nonlinear characteristics of soil foundation. To describe the nonlinear behaviour of a column, the ductility demand is adopted, and the moment-curvature relation of a column is assumed to be bilinear hysteretic. The fragility curves are represented as a log-normal distribution function for column damage, movement of superstructure, and cable yielding. And the seismic hazard at a specific site is estimated using the available seismic hazard maps. The results show that in seismically-isolated extradosed bridges under earthquakes, the effectiveness of the isolators is much more noticeable in the columns than the cables and girders.