• Title/Summary/Keyword: New genus

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Nested-PCR and a New ELISA-Based NovaLisa Test Kit for Malaria Diagnosis in an Endemic Area of Thailand

  • Thongdee, Pimwan;Chaijaroenkul, Wanna;Kuesap, Jiraporn;Na-Bangchang, Kesara
    • Parasites, Hosts and Diseases
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    • v.52 no.4
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    • pp.377-381
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    • 2014
  • Microscopy is considered as the gold standard for malaria diagnosis although its wide application is limited by the requirement of highly experienced microscopists. PCR and serological tests provide efficient diagnostic performance and have been applied for malaria diagnosis and research. The aim of this study was to investigate the diagnostic performance of nested PCR and a recently developed an ELISA-based new rapid diagnosis test (RDT), NovaLisa test kit, for diagnosis of malaria infection, using microscopic method as the gold standard. The performance of nested-PCR as a malaria diagnostic tool is excellent with respect to its high accuracy, sensitivity, specificity, and ability to discriminate Plasmodium species. The sensitivity and specificity of nested-PCR compared with the microscopic method for detection of Plasmodium falciparum, Plasmodium vivax, and P. falciparum/P. vivax mixed infection were 71.4 vs 100%, 100 vs 98.7%, and 100 vs 95.0%, respectively. The sensitivity and specificity of the ELISA-based NovaLisa test kit compared with the microscopic method for detection of Plasmodium genus were 89.0 vs 91.6%, respectively. NovaLisa test kit provided comparable diagnostic performance. Its relatively low cost, simplicity, and rapidity enables large scale field application.

Characteristics of a New Obligate Methanol-Oxidizing Bacterium (새로운 절대 메탄올 산화세균의 분리 및 특성)

  • Kim, Si-Wook;Park, Yong-Ha
    • Korean Journal of Microbiology
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    • v.31 no.4
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    • pp.261-266
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    • 1993
  • A new methyltrophic bacterium which utilizes methanol as a sole source of carbon and energy was isolated from soil. It was Gram-negative, nonmotile, nonspore-forming rod, and strictly aerobic bacterium. Catalase and oxidase activities were present. Nitrate was reduced to nitrite. Vitamins and other growth factors were not required. Generation time was 1.6 hr under the optimal condition. The isolate assimilated methanol via the ribulose mono-phosphate pathway (Enter-Doudoroff varient) and did not have .alpha.-ketoglutarate dehydrogenase. It assimilated ammonia through glutamate dehydrogenase. The guanine plus cytosine content of the DNA was 61.0 mol%. The celular fatty acid composition was primarily straight-chain saturated $C^{16 : 0}$ acids (palmitic acids) and unsaturated $C_{16 :1}$ acid (palmitoleic acids), and the isolate also contained two unidentified $C_{17}$ branched fatty acids. The major ubiquinone was Q-8, and Q-6 and Q-7 were present as minor components. Phosphatidylethanolamine and phosphatidylglycerol were predominantly present, and diphosphatidyglycerol was also detected. Based on the physiological and biochemical properties, the isolate was assigned to a novel species of the genus Methylobacillus, Methylobacillus methanolovorus sp. nov.

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Kretzschmaria quercicola sp. nov., an Undescribed Fungus from Living Oak in Mt. Daeryong, Korea

  • Yun, Ji Ho;Jo, Jong Won;Lee, Jin Heung;Han, Sang Kuk;Kim, Dae Ho;Lee, Jong Kyu
    • Mycobiology
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    • v.44 no.2
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    • pp.112-116
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    • 2016
  • We encountered an unfamiliar ascomycete fruiting body, fitting characteristics of the genus Kretzschmaria, which features in a stipitate ascigerous stroma with carbonaceous interior and disintegrating perithecia. In this study, we report and characterize a new species of the decaying fungus. Compared to other species, one of the notable features of this specimen (TPML150908-046) is its stromatal size (up to 15 cm). Although TPML150908-046 is morphologically similar to K. milleri and K. sandvicensis, it differs sharply from both species in apical ring size (TPML150908-046, $6.5{\sim}10.5{\mu}m$; K. milleri, $11{\sim}16{\mu}m$) and ascospore width (TPML150908-046, $10.5{\sim}17{\mu}m$; K. sandvicensis, $8.5~11.5{\mu}m$). Phylogenetic trees based on ${\beta}$-tubulin, ITS, and RPB2 sequences showed that our collection clustered with K. sandvicensis, with the respective similarities for these sequences being 95.6%, 91.3%, and 97.7%, signifying it as another species. With these results, we report it as a new species, which we call Kretzschmaria quercicola sp. nov.

Isozyme Variants in Genus Pinus by Simulated Acidic Rain (인공 산성비가 소나무속의 동위효소 양상에 미치는 영향)

  • EuiSooYoon
    • Korean Journal of Plant Resources
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    • v.10 no.4
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    • pp.305-313
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    • 1997
  • The effect of acid rain on plant isozyme response was studied with the treatment of simulated acid rain to Pinus densiflora, P. nigida and P. koraiensis for 9 months. The isozyme pattern of $\alpha$-Esterase($\alpha$-Est), Peroxidase(POD) and Glutamate dehydrogenase(GDH) were observed in the control (pH 5.6) and simulated acid rain (pH 3.5) treatment. No changes of isozyme pattern in $\alpha$-Est was observed in P. densiflora after 9 month treatment of simulated acid rain, but, two new isozymes were activated in P. nigida in the same treatment. In P. koraiensis, two new isozyme were activated but five isozymes were not activated. P. densiflora did not show any difference in POD and GDH after the treatment of simulated acid rain. P. nigida showed activation of eight and two isozymes in POD and GDH, respectively. P. koraiensis showed inactivation of 4 isozymes in POD but showed no changes In GDH.

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Wood-Rotting Fungi Collected in Suweon Campus of Seoul National University (1) (서울대학교(大學校) 수원(水原)캠퍼스에서 채집(採集)한 목재부후균(木材腐朽菌)(I))

  • La, Yong-Joon;Shin, Hyeon-Dong
    • The Korean Journal of Mycology
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    • v.10 no.4
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    • pp.203-206
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    • 1982
  • Wood-rotting fungi were collected in Suweon campus of Seoul National University from September 1981 to October 1982. These fungi were classified into 2 orders, 8 families, 22 genera and 34 species. Of these, Gloeoporus adustus (Willd. ex Fr.) $Pil\acute{a}t$ and G. dichrous (Fr.) Bres. were found to be new species that belong to unrecorded genus in Korea. Korean common names of these two new species were designated by the authors. List of the wood-rotting fungi was given with the generic name of host trees on which the fungus was collected.

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Isolation of New Strain of Cordyceps militaris HB8 and Optimal Condition for Production of Adenosine and Cordycepin in Fruit Body

  • Li, Jin Feng;Hoang, Van An;Ahn, Jong Chan;Yang, Dong Uk;Lee, Dong Wook;Yang, Deok Chun
    • Korean Journal of Plant Resources
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    • v.33 no.6
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    • pp.696-706
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    • 2020
  • Cordyceps has been used in traditional Chinese medicine more than 2000 year ago. In this study, the new Cordyceps militaris was founded and isolated from O-dae mountain in Korea, and was identified its genetic characteristics. The newly isolation strain HB8 was most closet to Cordyceps militaris W141449 (99.82%), Cordyceps militaris JLCY-LI819 (99.82%) and Cordyceps militaris 4642 (99.81%), respectively. the genotypic result was show that train HB8 was belonging to the Cordyceps militaris genus, therefore, Cordycep militaris HB8 proposed with accession number MT835161. This study we find the optimal condition for production of cordycepin from Cordyceps militaris HB8 was 8 mg/g (200 g of pupa, 1 g of KH2PO4, 0.5 g of K2HPO4, 20 g of glucose, 1 g of MgSO4, 0.05 g of vitamin B1, and 1 mg of NAA per liter; light condition 300-700 Lux and day/night was 14 h/10 h) and the optimum condition for the production of adenosine was 2.6 mg/g (15 g of skim milk powder, 1 g of KH2PO4, 0.5 g of K2HPO4, 20 g of glucose, 1 g of MgSO4, 0.05 g of vitamin B1, and 1 mg of NAA per liter; light condition 300-700 Lux and day/night was 14 h/10 h).

First Record of the Pelagic Stingray, Pteroplatytrygon violacea (Dasyatidae, Myliobatiformes) from Korea (한국산 색가오리과(Dasyatidae) 어류 1미기록종, Pteroplatytrygon violacea)

  • Kim, Byeong Yeob;Kim, Meang Jin;Song, Choon Bok
    • Korean Journal of Ichthyology
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    • v.30 no.2
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    • pp.114-118
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    • 2018
  • A single specimen (1,058 mm TL) of Pteroplatytrygon violacea, belonging to the family Dasyatidae, was firstly collected by using drift gill net in the north-western coastal waters of Jejudo Island, Korea on 6 July, 2017. This species was characterized by having a broadly rounded snout, five pairs of gill openings, tail with a large spine, ventral tail fold not reaching to the tip of tail, no dorsal fold, and ventral surface of disc dark purple. Based on such morphological characters, the specimen was identified as P. violacea and confirmed with the nucleotide sequence of the mitochondrial cytochrome c oxidase subunit I gene. We added P. violacea to the Korean fish fauna and propose the new Korean names, "Bo-ra-saek-ga-o-ri-sok" and "Bo-ra-saek-ga-o-ri" for the genus and species, respectively.

Nematodes Associated with Forest Trees in Korea III. A New Species of Xiphinemella Loos, 1950, and Four Unrecorded Species of Xiphinema Cobb, 1913 (한국에 있어서 임목에 기생하는 선충조사 III. Xiphinemella 속의 1신종 및 Xiphinema속의 4미기록종에 관하여)

  • 최영연;최영식;조명래
    • Korean journal of applied entomology
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    • v.31 no.4
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    • pp.416-426
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    • 1992
  • A new species of Xiphinemella is described and illustrated from soil around the roots of larch in Korea. Xiphinemella maiensis n. sp. has stylet length of 63-68$\mu\textrm{m}$, body length of 2.5-3.2 mm, and vulva position of 49-50%. It differs from X. esseri in more posteriorly positioned vulva (42-47% in X. esseri), shorter stylet (72-75$\mu\textrm{m}$ in X. esseri), and more anteriorly located guide ring (25-27 vs. 35-38$\mu\textrm{m}$). It also differs from X. ornata in having longer body (1.94-2.32 mm in X. ornata) and shorter stylet (82-92$\mu\textrm{m}$ in X. ornata). A key to species of the genus is provided. Xiphnema brevicolle, X. diffusum, X. chambersi, and X. insigne are firstly recorded from Korea.

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Isolation and Characterization of a New Hydrogen Sulfide-Oxidizing Bacterium Thiobacillus Sp. (황화수소 산화세균인 새로운 Thiobacillus sp.의 분리 및 특성)

  • Cha, Jin-Myeong;Lee, In-Hwa
    • Korean Journal of Microbiology
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    • v.32 no.4
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    • pp.252-257
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    • 1994
  • A new hydrogen sulfide-oxidation bacterium, Thiobacillus sp. was isolated from waste coal mine water around Hawsun in Chunnam province. The isolate was motile gram-negative rod shape, formed spore and grew up to be aerobically facultative chemolithotroph by using energy released from the oxidation of reduced inorganic sulfur compounds. It could assimilate various kinds of organic compounds and grew well upon thiosulfate-supplemented basal medium. To the lelvel of 32 mM in thiosulfate concentration, thiosulfate in itself was utilized as energy source for growth. However, from those of the higher concentration than 32 mM, thiosulfate functioned specifically as the substrate inhibitor rather than as the energy source. It was found that the optimum thiosulfate concentration for growth was 32 mM. The G+C content of the DNA was 65.0 mol%. The isolate had 16 : 1 + 17$_{cyc}$, 16 : 0 as their major non-hydroxylated cellular fatty acids, 3-OH 12 : 0 as a hydroxylated fatty acid and also contained unidentified $C_{18}$ branched fatty acid. The ubiquinone system in the respiratory chain was Q-9. Based on the physiological and biochemical characteristics, the isolate was assigned to a novel species of the genus Thiobacillus sp. iw.

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Two Acylglycerylgalactosides and a New Sesquiterpene Galactoside from the Flowers of Hemisteptia lyrata Bunge

  • Ha, Tae-Joung;Lee, Jin-Hwan;Hwang, Seon-Woo;Lee, Jun;Kang, Nam-Suk;Park, Keum-Yong;Suh, Duck-Yong;Park, Ki-Hun;Yang, Min-Suk
    • Journal of Applied Biological Chemistry
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    • v.49 no.1
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    • pp.16-20
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    • 2006
  • The flowers of Hemisteptia lyrata B. afforded two known acylglycerylgalactosides, 2',3'-di-O-(9Z,12Z,15Z-octadecatrienoyl)glyceryl ${\beta}$-D-galactopyranoside (1) and 2'-O-(9Z,12Z,15Z-octadecatrienoyl)glyceryl ${\beta}$-D-galactopyranoside (2), and a new sesquiterpene galactopyranoside, 7-eudesmene-1${\beta}$,4${\beta}$-diol-1-O-${\beta}$-D-galactopyranoside (3). This is the first time that galactopyranosides (1-3) have been isolated from the genus Hemisteptia. Their structures and stereochemistry were elucidated by 1D and 2D NMR data, including COSY, NOESY and HMBC experiments.