• Title/Summary/Keyword: Mathematical biology

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Utilization of Scientific Method as a Tool of Architectural Design

  • Yi, Yong-Kyu;Yi, Yun-Kyu
    • Architectural research
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    • v.12 no.2
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    • pp.1-7
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    • 2010
  • Science (natural science) is the systematic attempt to understand and interpret the nature phenomenon. For this reason, architects have used science to adapt nature to their design. With the rise of modern science, architecture became more closely related with science. Science available to develop new technology for architecture and it influenced architect's idea and concept. Symbolically, Architects use method or process of science to generate building form. The Rules of compositing particles in the chemistry or DNA (deoxyribonucleic acid) in the biology are used to generate a form of building. Literally, Architects use technology as a tool of science to improve physical performance of architecture. Like mathematical understanding of structure load enabled people to construct enclosure without columns or any of support system inside of architecture. Still natural phenomenon is not fully understood as science and science is still discovering a new phenomenon or changing its theory to adapt new discovery. New discovery or limitation of science influenced architecture throughout the history. This paper is to discuss how architectural theories are rest upon idea set forth by science. In addition, how technology as a tool of science has been utilized in architecture.

Evaluation of Metal Biosorption Efficiency of Laboratory-grown Microcystis under Various Environmental Conditions

  • Pradhan, Subhashree;Singh, Sarita;Rai, Lal Chand;Parker, Dorothy L.
    • Journal of Microbiology and Biotechnology
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    • v.8 no.1
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    • pp.53-60
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    • 1998
  • This study examines the effect of pH, temperature, metal ion concentration and culture density on metal biosorption by the nuisance cyanobacterium Microcystis aeruginosa. Ni biosorption was higher at pH 9.2 than at neutral and acidic pH. In contrast the biosorption of Cu and Zn was maximum at pH 7.0. However, biosorption of Zn was difficult to measure at pH values 9.2 and 10.5, owing to the formation of insoluble complexes. All the test metals (Cu, Zn, and Ni) showed maximum biosorption rate at low culture densities of 40 mg dry wt $1^{-1}$. The biosorption of Cu, Zn, and Ni was maximum at $40^{\circ}C$. However, no worthwhile difference in Zn and Ni sorption was noticed at 4 and $29^{\circ}C$ as compared to $40^{\circ}C$. Of these three metals used Microcystis showed a greater binding capacity ($K_{f}$ value=0.84, Freundlich adsorbent capacity) and accelerated biosorption rate for Cu under various environmental conditions. Fitness of mathematical models on metal biosorption by Microcystis confirmed that the biological materials behave in the same way as physical materials. These results suggest that before using a biosorbent for metal recovery, the environmental requirements of the biosorbent must be ascertained.

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Mathematical Approaches Related to Daily Feeding Activities of Rock Trout, Agrammus agrammus (노래미, Agrammus agrammus의 일주섭식활동에 관한 수리적 접근)

  • KIM Chong-Kawn;KANG Yong-Joo
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.24 no.5
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    • pp.315-326
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    • 1991
  • This study was tried for a mathematical approaches related to daily fluctuations in the stomach fullness of Agrammus agrammus. The specimen was collected by angling and gill net from September 1984 to August 1985 off Shinsudo, Samchonpo. Fullness of the stomachs was increased in the early morning and the late afternoon, decreased in the late morning, at noon, and during the night. That is, feeding activity of the fish was more intense at sunrise and sunset. Daily feeding activity of the fish in a day was divided into the time period of gastric evacuation and both feeding and gastric evacuation. Stomach fullness with the lapse of time in the time period of gastric evacuation was geometrically decreased. Stomach fullness in the time period of both feeding and gastric evacuation was affected by gastric evacuation rates, feeding rates, and maximum fullness of the stomach. These parameters were able to estimate from the method estimating the regression coefficient in the relationship between the time(t) and the stomach fullness$(F_t)$, or between stomach fullness at the time t and $t+\Deltat$. The rates of feeding and gastric evacuation were the highest in spring and the lowest in winter. The relationships between time(t) and stomach fullness$(F_t)$ in the time period of gastric evacuation and both feeding and gastric evacuation induced from hypotheses were respectively as follows. $$F_t=F_{to}e^{-r(t-to)}$$, $$F_t=F\infty-(F\infty-F_{to})e^{-(p+r)(t-{to})}$$

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Predictive Modeling for the Growth of Listeria monocytogenes as a Function of Temperature, NaCl, and pH

  • PARK SHIN YOUNG;CHOI JIN-WON;YEON JIHYE;LEE MIN JEONG;CHUNG DUCK HWA;KIM MIN-GON;LEE KYU-HO;KIM KEUN-SUNG;LEE DONG-HA;BAHK GYUNG-JIN;BAE DONG-HO;KIM KWANG-YUP;KIM CHEOL-HO
    • Journal of Microbiology and Biotechnology
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    • v.15 no.6
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    • pp.1323-1329
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    • 2005
  • A mathematical model was developed for predicting the growth kinetics of Listeria monocytogenes in tryptic soy broth (TSB) as a function of combined effects of temperature, pH, and NaCl. The TSB containing four different concentrations of NaCl (2, 4, 5, and $10\%$) was initially adjusted to six different pH levels (pH 5, 6, 7, 8, 9, and 10) and incubated at 4, 10, 25, or 37$^{circ}C$. In all experimental variables, the primary growth curves were well fitted ($r^{2}$=0.982 to 0.998) to a Gompertz equation to obtain the lag time (LT) and specific growth rate (SGR). Surface response models were identified as appropriate secondary models for LT and SGR on the basis of coefficient determination ($r^{2}$=0.907 for LT, 0.964 for SGR), mean square error (MSE=3.389 for LT, 0.018 for SGR), bias factor ($B_{1}$B,=0.706 for LT, 0.836 for SGR), and accuracy factor ($A_{f}$=1.567 for LT, 1.213 for SGR). Therefore, the developed secondary model proved reliable predictions of the combined effect of temperature, NaCl, and pH on both LT and SGR for L. monocytogenes in TSB.

The Role of PK/PD Modeling and Simulation in Model-based New Drug Development (모델 기반학적 신약개발에서 약동/약력학 모델링 및 시뮬레이션의 역할)

  • Yun, Hwi-Yeol;Baek, In-Hwan;Seo, Jeong-Won;Bae, Kyung-Jin;Lee, Mann-Hyung;Kang, Won-Ku;Kwon, Kwang-Il
    • Korean Journal of Clinical Pharmacy
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    • v.18 no.2
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    • pp.84-96
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    • 2008
  • In the recent, pharmacokinetic (PK)/pharmacodynamic (PD) modeling has appeared as a critical path tools in new drug development to optimize drug efficacy and safety. PK/PD modeling is the mathematical approaches of the relationships between PK and PD. This approach in new drug development can be estimated inaccessible PK and PD parameters, evaluated competing hypothesis, and predicted the response under new conditions. Additionally, PK/PD modeling provides the information about systemic conditions for understanding the pharmacology and biology. These advantages of PK/PD model development are to provide the early decision-making information in new drug development process, and to improve the prediction power for the success of clinical trials. The purpose of this review article is to summarize the PK/PD modeling process, and to provide the theoretical and practical information about widely used PK/PD models. This review also provides model schemes and the differential equations for the development of PK/PD model.

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Computer Simulation Study of the Potential Anti-arrhythmic Properties of Paeonol (Paeonol의 잠재적인 항부정맥 효과의 컴퓨터 시뮬레이션 연구)

  • Lee, Soojin
    • Journal of Physiology & Pathology in Korean Medicine
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    • v.29 no.4
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    • pp.305-312
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    • 2015
  • Paeonol is a major component found in the Paeoniaceae family such as Paeonia suffruticosa Andrews. Paeonia suffruticosa Andrews has traditionally been used to enhance blood flow and relieve joint pain in east Asian countries including China, Korea and Japan. Current research has shown that paeonol blocked the voltage-gated sodium channel and L-type calcium channel. However, there is a lack of research to reveal the relation between cardiac function and blockade of ion channels by paeonol. Therefore, the aim of this study is to investigate whether paeonol has anti-arrhythmic effects via modulating cardiac ion channels. It is collected that the effects of paeonol on multiple ion channels such as the fast sodium channel and L-type calcium channel from published papers. To incorporate the information on multi-channel block, we computed the effects using the mathematical cardiac model of the guinea-pig and rat ventricular cells (Noble 1998 and 1991 model) and induced early after-depolarizations (EADs) to generate an arrhythmia in the whole heart. Paeonol slightly shortened the action potential duration in the normal cardiac ventricular action potential by the inhibition of sodium channel and L-type calcium channel. Paeonol presented the protective effect from EADs by the inactivation of sodium channel but not L-type calcium channel. Paeonol did not show any changes when it treated on normal ventricular cells through the inhibition of sodium channel, but the protective effect of paeonol through sodium channel on EADs was dose-dependent. These findings suggest that paeonol and its original plant may possess anti-arrhythmic activity, which implies their cardioprotective effects.

A study on MERS-CoV outbreak in Korea using Bayesian negative binomial branching processes (베이지안 음이항 분기과정을 이용한 한국 메르스 발생 연구)

  • Park, Yuha;Choi, Ilsu
    • Journal of the Korean Data and Information Science Society
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    • v.28 no.1
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    • pp.153-161
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    • 2017
  • Branching processes which is used for epidemic dispersion as stochastic process model have advantages to estimate parameters by real data. We have to estimate both mean and dispersion parameter in order to use the negative binomial distribution as an offspring distribution on branching processes. In existing studies on biology and epidemiology, it is estimated using maximum-likelihood methods. However, for most of epidemic data, it is hard to get the best precision of maximum-likelihood estimator. We suggest a Bayesian inference that have good properties of statistics for small-sample. After estimating dispersion parameter we modelled the posterior distribution for 2015 Korea MERS cases. As the result, we found that the estimated dispersion parameter is relatively stable no matter how we assume prior distribution. We also computed extinction probabilities on branching processes using estimated dispersion parameters.

Parameters Involved in Autophosphorylation in Chronic Myeloid Leukemia: a Systems Biology Approach

  • Kumar, Himansu;Tichkule, Swapnil;Raj, Utkarsh;Gupta, Saurabh;Srivastava, Swati;Varadwaj, Pritish Kumar
    • Asian Pacific Journal of Cancer Prevention
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    • v.16 no.13
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    • pp.5273-5278
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    • 2015
  • Background: Chronic myeloid leukemia (CML) is a stem cell disorder characterized by the fusion of two oncogenes namely BCR and ABL with their aberrant expression. Autophosphorylation of BCR-ABL oncogenes results in proliferation of CML. The study deals with estimation of rate constant involved in each step of the cellular autophosphorylation process, which are consequently playing important roles in the proliferation of cancerous cells. Materials and Methods: A mathematical model was proposed for autophosphorylation of BCR-ABL oncogenes utilizing ordinary differential equations to enumerate the rate of change of each responsible system component. The major difficulty to model this process is the lack of experimental data, which are needed to estimate unknown model parameters. Initial concentration data of each substrate and product for BCR-ABL systems were collected from the reported literature. All parameters were optimized through time interval simulation using the fminsearch algorithm. Results: The rate of change versus time was estimated to indicate the role of each state variable that are crucial for the systems. The time wise change in concentration of substrate shows the convergence of each parameter in autophosphorylation process. Conclusions: The role of each constituent parameter and their relative time dependent variations in autophosphorylation process could be inferred.

Complexity Analysis of the Viking Labeled Release Experiments

  • Bianciardi, Giorgio;Miller, Joseph D.;Straat, Patricia Ann;Levin, Gilbert V.
    • International Journal of Aeronautical and Space Sciences
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    • v.13 no.1
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    • pp.14-26
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    • 2012
  • The only extraterrestrial life detection experiments ever conducted were the three which were components of the 1976 Viking Mission to Mars. Of these, only the Labeled Release experiment obtained a clearly positive response. In this experiment $^{14}C$ radiolabeled nutrient was added to the Mars soil samples. Active soils exhibited rapid, substantial gas release. The gas was probably $CO_2$ and, possibly, other radiocarbon-containing gases. We have applied complexity analysis to the Viking LR data. Measures of mathematical complexity permit deep analysis of data structure along continua including signal vs. noise, entropy vs.negentropy, periodicity vs. aperiodicity, order vs. disorder etc. We have employed seven complexity variables, all derived from LR data, to show that Viking LR active responses can be distinguished from controls via cluster analysis and other multivariate techniques. Furthermore, Martian LR active response data cluster with known biological time series while the control data cluster with purely physical measures. We conclude that the complexity pattern seen in active experiments strongly suggests biology while the different pattern in the control responses is more likely to be non-biological. Control responses that exhibit relatively low initial order rapidly devolve into near-random noise, while the active experiments exhibit higher initial order which decays only slowly. This suggests a robust biological response. These analyses support the interpretation that the Viking LR experiment did detect extant microbial life on Mars.

Improving the Professional Competence of a Specialist in Poland by Implementing Multimedia Technologies

  • Kravchenko, Tetiana;Varga, Lesia;Lypchanko-Kovachyk, Oksana;Chinchoy, Alexander;Yevtushenko, Nataliia;Syladii, Ivan;Kuchai, Oleksandr
    • International Journal of Computer Science & Network Security
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    • v.22 no.9
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    • pp.51-58
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    • 2022
  • The article emphasizes the features of the modern education system in Poland, reveals the peculiarities of improving the professional competence of a specialist in Poland through the implementation of multimedia technologies. Various forms of innovations implemented in improving the professional competence of a specialist are listed: improvement (rationalization), modernization, innovation. The forms of professional improvement through the introduction of computer technologies in general and multimedia technologies, in particular, primarily include various professional courses, qualification, preparatory, methodological conferences, seminars, postgraduate studies, foreign and state internships. At the same time, the main direction is self-education. The subject of professional improvement in the application of computer technologies by specialists is the updating of existing knowledge, exchange of professional experience, planning, as well as discussion of innovative works in which specialists participate. Professional growth of specialists can occur both during work and in higher education institutions during their studies. Modernization of computer technologies, especially multimedia ones, is a necessary condition for the functioning of specialists in modern society, since specialists are at the center of the educational process, during the improvement of professional competence. The main functions of the educational process necessary for improving the professional competence of specialists through the implementation of multimedia technologies are revealed. These functions not only contribute to the professional improvement of specialists, but also affect their solutions and optimize the maintenance of contacts between specialists. The importance of creating conditions that are consistent with the modern needs of innovative education is emphasized.