Parameters Involved in Autophosphorylation in Chronic Myeloid Leukemia: a Systems Biology Approach |
Kumar, Himansu
(Department of Bioinformatics, Indian Institute of Information Technology)
Tichkule, Swapnil (Department of Bioinformatics, Indian Institute of Information Technology) Raj, Utkarsh (Department of Bioinformatics, Indian Institute of Information Technology) Gupta, Saurabh (Department of Bioinformatics, Indian Institute of Information Technology) Srivastava, Swati (Lovely Professional University) Varadwaj, Pritish Kumar (Department of Bioinformatics, Indian Institute of Information Technology) |
1 | Bayard C, Annabel S (1988). Biology of chronic myelogenous leukemia: Is discordant maturation the primary defect? Seminars in Hematology, 25, 1-19. |
2 | Bogacki P, Shampine LF (1989). A 3(2) pair of Runge-Kutta formulas. Appl Math Letters, 2, 321-25. DOI ScienceOn |
3 | Clarkson BD, Fokas AS, Keller JB (1991). Mathematical model of granulocytopoiesis and chronic myelogenousleukaemia. Cancer Research, 51, 2084-91. |
4 | Daley GQ, Van ERA, Baltimore D (1990). Induction of chronic myelogenous leukemia in mice by the P210 bcr/abl gene of the Philadelphia chromosome. Science, 247, 824-30. DOI |
5 | Deininger MW, Goldman JM, Melo JV (2000). The molecular biology of chronic myeloid leukemia. Blood, 96, 3343-56. |
6 | Deng Z, Tian T (2014). A continuous optimization approach for inferring parameters in mathematical models of regulatory networks. BMC bioinformatics, 15, 256. DOI |
7 | Eaves C, Udomsakdi C, Cashman J, et al (1993). The biology of normal and neoplastic stem cells in CML. Leukemia and Lymphoma, 11, 245-53. DOI |
8 | Edda K, Wolfram L (2006). Mathematical modeling of intracellular signaling pathways. BMC Neuroscience, 7, 10. DOI |
9 | Finley SD, Chu LH, Popel AS (2014). Computational systems biology approaches to anti-angiogenic cancer therapeutics. Drug discovery today, 20, 187-97. |
10 | Heinrich R, Neel BG, Rapoport TA (2002). Mathematical models of protein kinase signal transduction. Mol Cell, 9, 957-70. DOI |
11 | Howard S, Yiannis K (2005).Accurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactions. AIP Journal of chemical physics, 122, 054103. DOI |
12 | Lagarias JC, Reeds JA, Wright MH, et al (1998). Convergence properties of the Nelder-Mead simplex method in low dimensions. SIAM Journal on optimization, 9, 112-47. DOI |
13 | Liepe J, Kirk P, Filippi S, et al (2014). A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation. Nature protocols, 9, 439-56. DOI |
14 | MacLean AL, Harrington HA, Stumpf MP, et al (2015). Mathematical and statistical techniques for systems medicine: The Wnt signaling pathway as a case study. arXiv preprint arXiv, 1502, 1902. |
15 | Marley SB, Deininger MW, Davidson R Jet al (2000). Thetyrosine kinase inhibitor STI571, like interferon-a, preferentially reduces the capacity for amplification of granulocyte-macrophage progenitors from patients with chronicmyeloid leukemia. Exp Hematol, 28, 551-7. DOI |
16 | Marshall-Colon A, Sengupta N, Rhodes D, et al (2014). Simulating labeling to estimate kinetic parameters for flux control analysis. In Plant Metabolic Flux Analysis, 1090, 211-22. DOI |
17 | Papin JA, Hunter T, Palsson BO, et al (2005). Reconstruction of cellular signalling networks and analysis of their properties. Nat Rev Mol Cell Biol, 6, 99-111. DOI |
18 | Mauro MJ, Druker BJ (2001). Chronicmyelogenous leukemia. Curr Opin Oncol, 13, 3-7. DOI |
19 | Michor F (2005). Dynamics of chronic myeloid leukemia. Nature, 435, 1267-70. DOI |
20 | Obel J, Souares Y, Hoy D, et al (2014). A systematic review of cervical cancer incidence and mortality in the pacific region. Asian Pac J Cancer Prev, 15, 9433. DOI |
21 | Pep C, Xiao Hu, Luonan, C, et al (2004). A mathematical model Ofbcr-ablautophosphorylation, Signaling through the crklpathway, and Gleevec dynamics in chronic myeloid leukemia. Discrete and Continuous, Dynamical Systems-Series B, 4. |
22 | Pokhilko A, Bou Torrent J, Pulido P, et al (2015). Mathematical modelling of the diurnal regulation of the MEP pathway in Arabidopsis. New Phytologist. |
23 | Powell Michael JD (1973). On search directions for minimization algorithms. Mathematical Programming, 4, 193-201. DOI |
24 | Raue A, Karlsson J, Saccomani MP, et al (2014). Comparison of approaches for parameter identifiability analysis of biological systems. Bioinformatics, 30, 1440-8. DOI |
25 | Sailaja K, Rao DN, Rao DR, et al (2010). Analysis of CYP3A5* 3 and CYP3A5* 6 gene polymorphisms in Indian chronic myeloid leukemia patients. Asian Pac J Cancer Prev, 11, 781-4. |
26 | Savage DG, & Antman KH (2002). Imatinib mesylate-a new oral targeted therapy. New England Journal of Medicine, 346, 683-93. DOI |
27 | SmithJA, FrancisSH, Corbin JD (1993). Autophosphorylation: A salient feature of protein kinases. Molecular and cellular Biochemistry, 127-128, 51-70. DOI |
28 | Summers KC, Shen F, Sierra PEA, et al (2011). Phosphorylation: the molecular switch of double-strand break repair. Int J Prot, 2011, 373816. |
29 | Tianhai T, Jiangning S (2012). Mathematical Modeling of the MAP kinase pathway using proteomic datasets. PLoS ONE, 7. |
30 | Tyson, JJ, Chen KC, Novak B (2003). Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. CurrOpin Cell Biol, 15, 221-31. DOI |
31 | Vera J, Gupta SK, Wolkenhauer O, et al (2015). Envisioning the application of systems biology in cancer immunology. In Cancer Immunology, 429-49. |
32 | Wu W, Feng S, Wang Y, et al (2014). Systems mapping of genes controlling chemotherapeutic drug efficiency for cancer stem cells. Drug discovery today, 19, 1125-30. DOI |
33 | Ye YX, Zhou J, Zhou YH, et al (2014) Clinical Significance of BCR-ABL Fusion Gene Subtypes in Chronic Myelogenous and Acute Lymphoblastic Leukemias. Asian Pac J Cancer Prev, 15, 9961-6. DOI |
34 | Yu-Qing Ge, Xiao-Feng Xu, Bo Yang, et al (2014). Saponins from Rubusparvifolius L. Induce Apoptosis in Human Chronic Myeloid Leukemia Cells through AMPK Activation and STAT3 Inhibition. Asian Pac J Cancer Prev, 15, 5455-61. DOI |
35 | Zhu XS, Lin ZY, Du J, Cao GX, Liu G (2014). BCR/ABL mRNA targeting small interfering RNA effects on proliferation and apoptosis in chronic myeloid leukemia. Asian Pac J Cancer Prev, 15, 4773-80. DOI |