• 제목/요약/키워드: G-sequence

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Methylase를 사용한 Escherichia coli에서 Triplex 존재에 관한 연구 (Intramolecular DNA Triplexes in Escherichia. coli)

  • 임향숙;김성조;강성만
    • 미생물학회지
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    • 제34권4호
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    • pp.231-235
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    • 1998
  • Escherichia coli 세포에서 intramolecular triplex가 형성될 수 있는지를 조사하기 위하여 genetic assay를 도입하였다. Two dimensional gel electrophoresis 방법을 사용하여 $(G)_9AATTC(G)_9$ 혹은 $(GAA)_9TTC(GAA)_8$ sequences가 in vitro에서 intramolecular triplex 구조를 형성하는 것을 확인하였다. Genetic assay를 위하여 temperature-sensitive EcoRI methylase 유전자를 포함한 플라스미드와 triplex를 형성할 수 있는 $(G)_9AATTC(G)_9$ 혹은 $(GAA)_9TTC(GAA)_8$ sequences를 포함한 플라스미드로 E. coli를 cotransform 하였다. EcoRI methylase가 발현되는 permissive temperature에서 pur pyr sequences를 포함하는 플라스미드는 EcoRI methylase 작용에 kinetically 저항성을 보여주었다. 이러한 결과는 pur pyr sequence들이 EcoRI methylase가 작용하기 어려운 triplex 구조를 E. coli 세포에서 형성한다는 것을 증거한다.

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Cloning, Expression, and Nucleotide Sequencing of the Gene Encoding Glucose Permease of Phosphotransferase System from Brevibacterium ammoniagenes

  • Yoon, Ki-Hong;Yim, Hyouk;Jung, Kyung-Hwa
    • Journal of Microbiology and Biotechnology
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    • 제8권3호
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    • pp.214-221
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    • 1998
  • A Brevibacterium ammoniagenes gene coding for glucose/mannose-specific enzyme II ($EII^{Glc}$) of the phosphoenolpyruvate-dependent phosphotransferase system (PTS) was cloned by complementing an Escherichia coli mutation affecting a ptsG gene, and the complete DNA nucleotide sequence was determined. The cloned gene was identified to be a ptsG, which enables the E. coli transportment to use glucose more efficiently than mannose as the sole carbon source in an M9 minimal medium. The ptsG gene of B. ammoniagenes consists of an open reading frame of 1,983 nucleotides putatively encoding a polypeptide of 661 amino acid residues and a TAA stop codon. The deduced amino acid sequence of the B. ammoniagenes $EII^{Glc}$ shows, at $46\%$, the highest degree of sequence similarity with the Corynebacterium glutamicum EII specific for both glucose and mannose. In addition, the $EII^{Glc}$ shares approximately $30\%$ sequence similarities with sucrose-specific and ${\beta}$-glucoside-specific EIIs of the several bacteria belonging to the glucose-PTS class. The 161-amino-acid C-terminal sequence of $EII^{Glc}$ is also similar to that of E. coli enzyme $IIA^{Glc}$, specific for glucose ($EIIA^{Glc}$). The B. ammoniagenes $EII^{Glc}$ consists of three domains; a hydrophobic region (EIIC) and two hydrophilic regions (EIIA, EIIB). The arrangement of structural domains, IIBCA, of the $EII^{Glc}$ is identical to those of EIIs specific for sucrose or ${\beta}$-glucoside. While the domain IIA was removed from the B. ammoniagenes $EII^{Glc}$ the remaining domains IIBC were found to restore the glucose and mannose-utilizing capacity of E. coli mutant lacking $EII^{Glc}$ activity with $EIIA^{Glc}$ of the E. coli mutant. $EII^{Glc}$ contains a histidine residue and a cysteine residue which are putative phosphorylation sites for the protein.

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EVALUATION SUBGROUPS AND CELLULAR EXTENSIONS OF CW-COMPLEXES

  • Lee, Kee-Young;Woo, Moo-Ha
    • 대한수학회보
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    • 제32권1호
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    • pp.45-56
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    • 1995
  • D. H. Gottlieb [1, 2] studied the subgroups $G_n(X)$ of homotopy groups $\pi_n(X)$. In [5, 7, 10], the authors introduced subgroups $G_n(X, A)$ and $G_n^{Rel}(X, A) of \pi_n(X)$ and $\pi_n(X, A)$ respectively and showed that they fit together into a sequence $$ \cdots \to G_n(A) \longrightarrow^{i_*} G_n(X, A) \longrightarrow^{j_*} G_n^{Rel}(X, A) \longrightarrow^\partial $$ $$ \cdots \to G_1^{Rel}(X, A) \to G_0(A) \ to G_0(X, A) $$ where $i_*, j_*$ and \partial$ are restrictions of the usual homomorphisms of the homotopy sequence $$ \cdot \to^\partial \pi_n(A) \longrightarrow^{i_*} \pi_n(X) \longrightarrow^{j_*} \pi_n(X, A) \to \cdot \to \pi_0(A) \to \pi_0(X) $$.

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GLOBAL ATTRACTIVITY OF THE RECURSIVE SEQUENCE $x_{n+1}$ = $\frac{\alpha-{\beta}x_{n-1}}{\gamma+g(x_n)}$

  • Ahmed, A. M.
    • Journal of applied mathematics & informatics
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    • 제26권1_2호
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    • pp.275-282
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    • 2008
  • Our aim in this paper is to investigate the global attractivity of the recursive sequence $x_{n+1}$ = $\frac{\alpha-{\beta}x_{n-1}}{\gamma+g(x_n)}$ under specified conditions. We show that the positive (or zero for $\alpha$ = 0) equilibrium point of the equation is a global attractor with a basin that depends on certain conditions posed on the coefficients and the function g(x).

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청국장에서 분리된 신생 박테리오파지 SPG24의 전체 염기 서열 (Complete genome sequence of a novel bacteriophage SPG24 isolated from Cheonggukjang)

  • 김채현;이규철;김인교;김석천;이오형;이찬희
    • 미생물학회지
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    • 제53권2호
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    • pp.144-145
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    • 2017
  • Bacillus subtilis를 이용하여 청국장 발효 연구를 진행하던 중 발효능이 뛰어난 B. subtilis G24라는 균주를 새로 분리하였고, 이를 숙주로 이용하는 bacteriophage SPG24를 새로 분리하였다. 본 연구에서는 bacteriophage SPG24의 유전체 서열을 해독하였으며 전체길이 152,060 bp, G+C 함량 42.2%, 232개 ORF의 bacteriophage SPG24는 B. subtilis G24를 숙주로 이용함으로써 청국장 발효를 저해하는 것으로 확인되었다.

효모 HIS 5 유전자에 관한 연구 - Saccharomyces cerevisiae HIS 5 유전자의 5' 상류영역의 염기배열 - (Studies on the HIS 5 Gene of Yeast - The nucleotide sequence of 5' upstream region of the HIS 5 Gene of Saccharomyces cerevisiae -)

  • 정동효;니시와키 쿄니;오시마 야스지
    • 한국미생물·생명공학회지
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    • 제13권1호
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    • pp.19-25
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    • 1985
  • Saccharomyces cerevisiae HIS 5 유전자는 histidinol phosphate aminotransferase (EC: 2, 6, 1,9)를 code하는 아미노산 합성유전자이다. 이 유전자는 plasmid pSH 530에 cloning되어 E. coli와 Saccharomyces cerevisiae 숙주에서 promoter로서 전사하였다. HIS 5 유전자의 총염기 수는 736개이였고 5' 상류영역에는 긴 reading frame, directed repeat, 전사개시점, 그리고 Pribnow box염기배열이 있었다. 특히 HIS 5 유전자의 ATG 주변 염기배열은 -A-A-A-T-T-A-C-A-C-T-A-T-G-G-T-T-T-T-T-G-A-T-였으며 C block은 없었다.

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SSU 부위의 유전자 염기서열 분석에 의한 한국연안에서 분리한 Cochiodinium polykrikoides Margalef와 Gyrodinium aurelum Hulburt 적조생물의 분자생물학적 연구 (Genetic Study of the Class Dinophyceae Including Red Tide Microalgae Based on a Partial Sequence of SSU Region : Molecular Position of Korean Isolates of Cochlodinium polykrikoides Margalef and Gyrodinium aureolum Hulburt)

  • Cho, Eun-Seob
    • 생명과학회지
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    • 제14권4호
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    • pp.593-607
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    • 2004
  • 유해성 적조생물 Cochlodinium polykrikoides/Gyrodinium aurelum을 포함한 43 종류의 와편조류를 대상으로 SSU 부위 유전자를 분석했다. 유전자 염기서열에 의거한 상호 계통수는 parisomny, distance, maxium 방법으로 실행했다. Noctilura scintillans, Gonyaulax spinifera와 Crythecodinium cohnii 종들은 와편모조류 중 가장 유전적으로 먼 것으로 보였다. Alexandrium과 Symbiodinium 종간의 bootstrap는 70% 이상의 상호 단일 계통도를 보인 반면에, Gymnodinium과 Gyrodinium은 근립절약계수와 최대 유사도 방법에서 다형 계통도를 나타내었다. Gyroddinium aurelum과 G. dorsum/G. galathenum의 유전적 분화율은 7.4% (45 bp) 였고, G. aurelum과 G. mikimotoi 상호간에는 0.9% (5bp) 밖에 나타나지 않았다. 또한 C. polykrikoides와 G. aurelum도 5.2% (31bp)로 낮은 유전적 분화율을 보였다. 계통도를 분석한 결과 G. aureolum과 C. polykrikoides는 Gyrodinium 보다 Gymnodinim 속에 훨씬 더 근접하게 나타났다.

Test Sequence Generation Using Multiple Unique State Signature(MUSS)

  • Jung, Yoon-Hee;Hong, Beom-Kee
    • Journal of Electrical Engineering and information Science
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    • 제2권6호
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    • pp.43-47
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    • 1997
  • A procedure presented in this paper generates test sequences to check the conformity of an implementation with a protocol specification, which is modeled as a deterministic finite state machine (FSM). Given a FSM, a common procedure of test sequence generation, first, constructs a directed graph which edges include the state check after each transition, and produces a symmetric graph G* from and, finally, finds a Euler tour of G*. We propose a technique to determine a minimum-cost tour of the transition graph of the FSM. The proposed technique using Multiple Unique State Signature (MUSS) solves an open issue that one MUIO sequence assignment may lead to two more edges of unit cost being replicated to from G* while an optimal assignment may lead to the replication of a single edge of high cost. In this paper, randomly generated FSMs have been studied as test cases. The result shows that the proposed technique saves the cost 4∼28% and 2∼21% over the previous approach using MUIO and MUSP, respectively.

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cDNA Sequence and mRNA Expression of a Putative Alcohol Dehydrogenase from the Mole Cricket, Gryllotalpa orientalis

  • Kim, Iksoo;Lee, Kwang-Sik;Jin, Byung-Rae;Lee, Young-Sin;Ryu, Kang-Sun
    • International Journal of Industrial Entomology and Biomaterials
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    • 제7권1호
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    • pp.37-44
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    • 2003
  • Alcohol dehydrogenases (AHDs) are enzymes responsible for the catalysis of the reversible conversion of various alcohols to their corresponding aldehydes and ketonesis. Until now cDNA sequences of ADH gene is informed exclusively from several diptean species. We describe here the cDNA sequence and mRNA expression of a putative ADH gene from the mole cricket, Gryllotalpa orientalis, and phylogenetic relationships among known insect ADHs. The G. orientalis ADH cDNA sequences comprised of 798 bp encoding 266 amino acid residues. The multiple sequence alignment of G. orientalis ADH gene and known dipteran ADHs shared 100% identity in the nine amino acid residues that are important for the enzymatic activity in Drosophila melanogaster. Percent sequence identity ranged from 25% to 32% among all insect ADHs including both types of ADHs. G. orientalis ADH gene showed no clear resemblance to any dipteran species and type. Phylogenetic analysis of the deduced amino acid sequences of G. orientalis ADH gene with available dipteran ADH genes including both types of ADHs further confirmed that the G. orientalis ADH gene is not clearly assigned to either type of ADHs. Northern blot analysis revealed a stronger signal in the fat body than midgut and epidermis, indicating that the fat body possibly is a main site for the synthesis of the G. orientalis ADH protein.