• Title/Summary/Keyword: 3-hydroxyvalerate

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Identification and Analysis of Putative Polyhydroxyalkanoate Synthase (PhaC) in Pseudomonas fluorescens

  • Lim, Ju Hyoung;Rhie, Ho-Gun;Kim, Jeong Nam
    • Journal of Microbiology and Biotechnology
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    • 제28권7호
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    • pp.1133-1140
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    • 2018
  • Pseudomonas fluorescens KLR101 was found to be capable of producing polyhydroxyalkanoate (PHA) using various sugars and fatty acids with carbon numbers ranging from 2 to 6. The PHA granules consisted mainly of a poly(3-hydroxybutyrate) homopolymer and/or poly(3-hydroxybutyrate-co-3-hydroxyvalerate) copolymer. Genomic DNA of P. fluorescens was fractionated and cloned into a lambda library, in which a 5.8-kb fragment that hybridized to a heterologous phaC probe from Ralstonia eutropha was identified. In vivo expression in Klebsiella aerogenes KC2671 (pUMS), restriction mapping, Southern hybridization experiments, and sequencing data revealed that PHA biosynthesis by P. fluorescens relied upon a polypeptide encoded by a 1,683-bp non-operonal ORF, which was preceded by a possible -24/-12 promoter and highly similar to DNA sequences of a gene encoding PHA synthase in the genus Pseudomonas. In vivo expression of the putative PHA synthase gene ($phaC_{Pf}$) in a recombinant Escherichia coli strain was investigated by using glucose and decanoate as substrates. E. coli (${phaC_{Pf}}^+$, pUMS) grown in medium containing glucose accumulated PHA granules consisting mainly of 3-hydroxybutyrate, whereas only a trace amount of 3-hydroxydecanoate was detected from an E. coli fadR mutant (${phaC_{Pf}}^+$) grown in medium containing decanoate. In vitro enzymatic assessment experiments showed that 3-hydroxybutyryl-CoA was efficiently used as a substrate of purified $PhaC_{Pf}$, suggesting that the putative PHA synthase of P. fluorescens utilizes mainly short-chain-length PHA precursors as a substrate.

천연 항균물질 루틴을 함유하는 PHBV 나노섬유의 제조 및 생체적합성 (Fabrication and Biocompatibility of Rutin-containing PHBV Nanofibrous Scaffolds)

  • 채원표;싱즐챠이;김영진;상희선;허만우;강인규
    • 폴리머
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    • 제35권3호
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    • pp.210-215
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    • 2011
  • 루틴은 항발암, 소염제, 항바이러스성 기능을 갖는 물질이다. 미생물이 만들어낸 폴리에스테르인 PHBV와 루틴을 전기방사하여 나노섬유 부직포를 얻었다. 나노섬유 부직포의 항균성은 황색포도상구균(Staphylococcus aureus), 폐렴간균(Klebsiella pneumoniae)을 사용하여 평가하였고, KB 셀을 이용하여 세포독성을 평가하였다. 그 결과 루틴을 3 wt% 함유할 때 지지체는 우수한 항균성을 보였으며, KB 셀을 이용한 실험결과로부터 루틴을 함유하는 PHBV 지지체는 세포독성을 나타내지 않음을 알 수 있었다.

Fabrication of PHBV/Keratin Composite Nanofibrous Mats for Biomedical Applications

  • Yuan, Jiang;Xing, Zhi-Cai;Park, Suk-Woo;Geng, Jia;Kang, Inn-Kyu;Yuan, Jiang;Shen, Jian;Meng, Wan;Shim, Kyoung-Jin;Han, In-Suk;Kim, Jung-Chul
    • Macromolecular Research
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    • 제17권11호
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    • pp.850-855
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    • 2009
  • Keratin is an important protein used in wound healing and tissue recovery. In this study, keratin was modified chemically with iodoacetic acid (IAA) to enhance its solubility in organic solvent. Poly(hydroxybutylate-co-hydroxyvalerate) (PHBV) and modified keratin were dissolved in hexafluoroisopropanol (HFIP) and electrospun to produce nanofibrous mats. The resulting mats were surface-characterized by ATR-FTIR, field-emission scanning electron microscopy (FE-SEM) and electron spectroscopy for chemical analysis (ESCA). The pure m-keratin mat was cross-linked with glutaraldehyde vapor to make it insoluble in water. The biodegradation test in vitro showed that the mats could be biodegraded by PHB depolymerase and trypsin aqueous solution. The results of the cell adhesion experiment showed that the NIH 3T3 cells adhered more to the PHBV/m-keratin nanofibrous mats than the PHBV film. The BrdU assay showed that the keratin and PHBV/m-keratin nanofibrous mats could accelerate the proliferation of fibroblast cells compared to the PHBV nanofibrous mats.

Pseudomonas sp. HJ-2를 이용한 고무탄성 Polyhydroxyalkanoate의 생산 (Production of Rubber-Elastic Polyhydroxyalkanoates by Pseudomonas sp. HJ-2)

  • 정정욱;최강욱;김영백;이영하
    • 미생물학회지
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    • 제36권2호
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    • pp.155-160
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    • 2000
  • Pseudomonas sp. HJ-2는 heptanoinc acid를 단일탄소원으로 이용하여 3-hydroxybutyrate (3HB),3-hydroxy-velerate (3HV) 및 3-hydroxybutyrate (3HHp)를 구성 단위체로 하는 고무탄성 polyhydroxyalkanoate (PHA)를 생합성한다. 이 미생물 고분자는 poly(3HB-co-3HV)공중합체와 poly(3HHp) 단일중합체로 이루어진 혼합물임이 밝혀졌다. 본 연구에서는 PHA가 고무탄성체로서의 성질을 유지하는데 필용한 단위체 조성과 HJ-2의 배양조건이 PHA의 생산 및 단위체 조성에 미치는 영향에 대하여 조사하였다. 생합성된 PHA의 탄성률은 poly(3HHp)의 존재로 크게 감소되었으나, 3HV의 함량이 높은 poly(3HB-co-3HV) 자체도 최대변형률 740%로서 고무탄성체로서의 성질을 보였다. HJ-2의 생장 및 PHA 생합성은 탄소원인 heptanoic acid의 초기농도가 40mMdlfEo 가장 높았으나, 50mM의 농도에서는 큰 저해를 받았다. PHA 생합성은 질소와 인이 결핍된 조건에서 크게 증가되었다. 배양액의 pH 및 통기는 HJ-2로부터 생합성되는 PHA의 단위체 조성에 큰 영향을 주는 것으로 나타났다. pH 7.5에서 생합성되는 고분자는 poly(3HB-co-38% 3HV)인 반면에 pH8.0에서의 고분자는 3HHp가 95%를 차지하였다. 발효조의 교반속도를 달리한 실험의 결과 고분자 내 3HHp의 함량은 산소전달 속도가 높아질수록 증가하였다.

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DNA shuffling을 이용한 Alcaligenes faecalis T1의 PHB depolymerase 활성 증진 (Enhancement of PHB depolymerase Activity from Alcaligenes faecalis T1 by DNA Shuffling)

  • 신동성;이영하;남진식
    • 미생물학회지
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    • 제39권2호
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    • pp.76-82
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    • 2003
  • Alcaligenes faecalis T1의 Poly(3-hydroxybutyrate)(PHB) depolymerase활성 증진을 위해 DNA shuffling방법을 이용하였다. 제조된 A. faecalis T1의 PHB depolymerase 돌연변이 유전자의 library를 Pseudomonas syringae의 icenucleation protein유전자를 포함하는 발현벡터 pJHCll에 클로닝하여 약 7,000개의 형질전환체를 얻었다. 탄소원으로 PHB또는 poly(3-hydroxybutyrate-co-3-hydroxyvalerate)를 포함하는 M9최소배지를 이용하여 형질전환체들로부터 활성이 서로 다른 돌연변이주들을 선별하였다. 이들의 PHB depolymease 활성은 평판배지에서의 halo형성 및 배양 상등액을 이용한 탁도 감소 실험으로 확인하였으며,형질전환체들 중에서 shuffling전의 대조군에 비하여 사용된 기질에 따라 효소활성이 1.8-3.2배 증진된 II-4 돌연변이주를 얻었다. DNA 염기서열의 분석을 통하여 II-4의 PHB depolymease에는 3개의 아미노산 치환(A1a209Va1, Leu258Phe, Asp263Thr)이 이루어졌음을 확인하였다. 여러 가지 돌연변이주의 아미노산 서열의 변화를 분석한 결과, PHB depolymerase의 catalytictriad주위에 기존 아미노산에 비하여 보다 소수성인 아미노산으로의 치환이 소수성 기질인 PHB에 대한분해 활성 중진에 기여하는 것으로 추정되었다.

Swinging Effect of Salicylic Acid on the Accumulation of Polyhydroxyalkanoic Acid (PHA) in Pseudomonas aeruginosa BM114 Synthesizing Both MCL- and SCL-PHA

  • Rho, Jong-Kook;Choi, Mun-Hwan;Shim, Ji-Hoon;Lee, So-Young;Woo, Myeong-Ji;Ko, Bong-Sung;Chi, Ki-Whan;Yoon, Sung-Chul
    • Journal of Microbiology and Biotechnology
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    • 제17권12호
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    • pp.2018-2026
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    • 2007
  • A bacterium, Pseudomonas aeruginosa BM114, capable of accumulating a blend of medium-chain-length (MCL)- and short-chain-length (SCL)-polyhydroxyalkanoic acid (PHA), was isolated. Salicylic acid (SA), without being metabolized, was found to specifically inhibit only the accumulation of MCL-PHA without affecting cell growth. An addition of 20 mM SA selectively inhibited the accumulation of MCL-PHA in decanoate-grown cells by 83% of the control content in one-step cultivation, where overall PHA accumulation was inhibited by only ${\sim}11%$. Typically, the molar monomer-unit ratio of the PHA for 25 mM decanoate-grown cells changed from 46:4:25:25 (=[3-hydroxybutyrate]:[3-hydroxycaproate]: [3-hydroxyoctanoate]:[3-hydroxydecanoate]) at 0 mM SA (dry cell wt, 1.97 g/l; PHA content, 48.6 wt%) to 91:1:4:4 at 20 mM SA (dry cell wt, 1.85 g/l; PHA content, 43.2 wt%). Thus, the stimulation of SCL-PHA accumulation was observed. Growth of P. aeruginosa BM114 on undecanoic acid also produced a PHA blend composed of 47.4% P(3HB-co-3-hydroxyvalerate) and 52.6% P(3-hydroxyheptanoate-co-3-hydroxynonanoate-co-3-hydroxyundecanoate). Similar to the case of even-carboxylic acids, SA inhibited the accumulation of only MCL-PHA, but stimulated the accumulation of SCL-PHA. For all medium-chain fatty acids tested, SA induced a stimulation of SCL-PHA accumulation in the BM114 strain. SA could thus be used to suppress only the formation of MCL-PHA in Pseudomonas spp. accumulating a blend of SCL-PHA and MCL-PHA.

Molecular Characterization of Extracellular Medium-chain-length Poly(3-hydroxyalkanoate) Depolymerase Genes from Pseudomonas alcaligenes Strains

  • Kim Do Young;Kim Hyun Chul;Kim Sun Young;Rhee Young Ha
    • Journal of Microbiology
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    • 제43권3호
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    • pp.285-294
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    • 2005
  • A bacterial strain M4-7 capable of degrading various polyesters, such as poly$(\varepsilon-caprolactone)$, poly(3-hydroxybutyrate-co-3-hydroxyvalerate), poly(3-hydroxyoctanoate), and poly(3-hydroxy-5-phenylvalerate), was isolated from a marine environment and identified as Pseudomonas alcaligenes. The relative molecular mass of a purified extracellular medium-chain-length poly(3-hydroxyalkanoate) (MCL-PHA) depolymerase $(PhaZ_{palM4-7})$ from P. alcaligenes M4-7 was 28.0 kDa, as determined by SDS-PAGE. The $PhaZ_{palM4-7}$ was most active in 50 mM glycine-NaOH buffer (pH 9.0) at $35^{\circ}C$. It was insensitive to dithiothreitol, sodium azide, and iodoacetamide, but susceptible to p-hydroxymercuribenzoic acid, N-bromosuccinimide, acetic anhydride, EDTA, diisopropyl fluorophosphate, phenylmethylsulfonyl fluoride, Tween 80, and Triton X-100. In this study, the genes encoding MCL-PHA depolymerase were cloned, sequenced, and characterized from a soil bacterium, P. alcaligenes LB19 (Kim et al., 2002, Biomacro-molecules 3, 291-296) as well as P. alcaligenes M4-7. The structural gene $(phaZ_{palLB19})$ of MCL-PHA depolymerase of P. alcaligenes LB19 consisted of an 837 bp open reading frame (ORF) encoding a protein of 278 amino acids with a deduced $M_r$ of 30,188 Da. However, the MCL-PHA depolymerase gene $(phaZ_{palM4-7})$ of P. alcaligenes M4-7 was composed of an 834 bp ORF encoding a protein of 277 amino acids with a deduced Mr of 30,323 Da. Amino acid sequence analyses showed that, in the two different polypeptides, a substrate-binding domain and a catalytic domain are located in the N-terminus and in the C-terminus, respectively. The $PhaZ_{palLB19}$ and the $PhaZ_{palM4-7}$ commonly share the lipase box, GISSG, in their catalytic domains, and utilize $^{111}Asn$ and $^{110}Ser$ residues, respectively, as oxyanions that play an important role in transition-state stabilization of hydrolytic reactions.

전자선 조사에 의한 온도응답성 나노섬유 표면의 제조 및 특성분석 (Fabrication and Characterization of Thermo-responsive Nanofibrous Surfaces Using Electron Beam Irradiation)

  • 전현애;오환희;김영진;고재억;정호윤;강인규;김원일;권오형
    • 폴리머
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    • 제32권4호
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    • pp.359-365
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    • 2008
  • 전기방사법에 의해 미생물 유래의 나노섬유 부직포를 제조하였고, 전자선조사에 의해 나노섬유상에 poly(N-isopropylacrylamide)(PIPAAm)을 그래프트함으로써 온도응답성 나노섬유표면을 제조하였다. 얻어진 나노섬유는 랜덤하게 배열되었으며 평균직경이 400 nm이었다. ATR-FTIR 및 ESCA 분석에 의해서 PIPAAm이 나노섬유 표면에 성공적으로 그래프트되었음을 확인하였다. PIPAAm을 그래프트 하지 않은 표면에서는 물접촉각의 변화가 없었으나, PIPAAm이 그래프트된 나노섬유 표면에서는 온도가 $37^{\circ}C$에서 $20^{\circ}C$로 바뀜에 따라 물접촉각이 감소하였다. 이러한 결과는 PIPAAm이 그래프트된 표면에서 높은 온도에서는 소수성의 특성을 가지다가, 낮은 온도에서는 PIPAAm 사슬이 수화되면서 친수성으로 바뀌었기 때문이다. 제조한 온도응답성 나노섬유는 조직적합성이 우수하였으며, 저온처리에 의해 배양세포가 원활히 탈착 회수됨을 알 수 있었다.