Molecular Characterization of Extracellular Medium-chain-length Poly(3-hydroxyalkanoate) Depolymerase Genes from Pseudomonas alcaligenes Strains |
Kim Do Young
(Department of Microbiology, School of Bioscience and Biotechnology, Chungnam National University)
Kim Hyun Chul (Department of Microbiology, School of Bioscience and Biotechnology, Chungnam National University) Kim Sun Young (Department of Microbiology, School of Bioscience and Biotechnology, Chungnam National University) Rhee Young Ha (Department of Microbiology, School of Bioscience and Biotechnology, Chungnam National University) |
1 | Chun, J. 1995. Computer-assisted classification and identification of actinomycetes. Ph.D. Thesis. University of Newcastle, UK |
2 | Laemmli, U.K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680-685 DOI PUBMED ScienceOn |
3 | Quinteros, R., S. Goodwin, R.W. Lenz, and W.H. Park. 1999. Extracellular degradation of medium chain length poly(-hydroxyalkanoates by Comamonas sp.. Int. J. Biol. Macromol. 25, 135-143 DOI PUBMED ScienceOn |
4 | Roberts, J.D., J. Kraut, R.A. Alden, and J.J. Birktoft. 1972. Subtilisin: a stereochemical mechanism involving transition-state stabilization. Biochemistry 11, 4293-4303 DOI ScienceOn |
5 | Schirmer, A., D. Jendrossek, and H.G. Schlegel. 1993. Degradation of poly(3-hydroxyoctanoic acid) [P(3HO)] by bacteria: purification and properties of a P(3HO) depolymerase from Pseudomonas fluorescens GK13. Appl. Environ. Microbiol. 59, 1220-1227. PUBMED |
6 | Steinbüchel, A. and H.E. Valentin. 1995. Diversity of bacterial polyhydroxyalkanoic acids. FEMS Microbiol. Lett. 128, 219-228 DOI |
7 | Syn, C.K.C. and S. Swarup. 2000. A scalable protocol for the isolation of large-sized genomic DNA within an hour from several bacteria. Anal. Biochem. 278, 86-90 DOI ScienceOn |
8 | Lageveen, R.G., G.W. Huisman, H. Preusting, P. Ketelaar, G. Eggink, and B. Witholt. 1988. Formation of polyesters by Pseudomonas oleovorans: effect of substrate on formation and composition poly-(R)-3-hydroxyalkanoates and poly-(R)-3- hydroxyalkenoates. Appl. Environ. Microbiol. 54, 2924-2932 PUBMED |
9 | Foster, L.J.R., S.J. Zervas, R.W. Lenz, and R.C. Fuller. 1995. The biodegradation of poly-3-hydroxyalkanoates, PHAs, with long alkyl substituents by Pseudomonas maculicola. Biodegradation 6, 67-73 DOI ScienceOn |
10 | Schirmer, A. and D. Jendrossek. 1994. Molecular characterization of the extracellular poly(3-hydroxyoctanoic acid) [P(3HO)] depolymerase gene of Pseudomonas fluorescens GK13 and of its gene product. J. Bacteriol. 176, 7065-7073. DOI PUBMED |
11 | Kim, H., H.S. Ju, and J. Kim. 2000b. Characterization of an extracellular poly(3-hydroxy-5-phenylvalerate) depolymerase from Xanthomonas sp. JS02. Appl. Microbiol. Biotechnol. 53, 323-327 DOI ScienceOn |
12 | Chung, S.H., G.G. Choi, H.W. Kim, and Y.H. Rhee. 2001. Effect of levulinic acid on the production of poly(3-hydroxybutyrate-co- 3-hydroxyvalerate) by Ralstonia eutropha KHB-8862. J. Microbiol. 39, 79-82 |
13 | Dunn, M.J. 1996. Electroelution of proteins from polyacrylamide gels. Methods Mol. Biol. 59, 357-362 |
14 | Kim, D.Y., Y.B. Kim, and Y.H. Rhee. 2000c. Evaluation of various carbon substrates for the biosynthesis of polyhydroxyalkanoates bearing functional groups by Pseudomonas putida. Int. J. Biol. Macromol. 28, 23-29 DOI ScienceOn |
15 | Klingbeil, B., R.M. Kroppenstedt, and D. Jendrossek. 1996. Taxonomic identification of Streptomyces exfoliatus K10 and characterization of its poly(3-hydroxybutyrate) depolymerase gene. FEMS Microbiol. Lett. 142, 215-221 DOI PUBMED |
16 | Elbanna, K., T. Lütke-Eversloh, D. Jendrossek, H. Luftmann, and A. Steinüchel. 2004. Studies on the biodegradability of polythiester copolymers and homopolymers by polyhydroxyalkanoate (PHA)-degrading bacteria and PHA depolymerases. Arch. Microbiol. 182, 212-225 PUBMED |
17 | Bradford, M.M. 1976. A rapid and sensitive method for the quantitation of microorganism quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72, 248-254 DOI PUBMED ScienceOn |
18 | Choi, G.G., M.W. Kim, J.Y. Kim, and Y.H. Rhee. 2003. Production of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) with high molar fractions of 3-hydroxyvalerate by a threonine overproducing mutant of Alcaligenes sp. SH-69. Biotechnol. Lett. 13, 632-635 |
19 | Park, J.S., J.Y. Choi, P.M. Joung, S.J. Park, Y.H. Rhee, and K.S. Shin. 2001. Isolation of a medium chain length polyhydroxyalkanoic acids degrading bacterium, Janthinobacterium lividum. J. Microbiol. 39, 139-141 |
20 | Kim, D.Y., J.S. Nam, and Y.H. Rhee. 2002. Characterization of an extracellular medium-chain-length poly(3-hydroxyalkanoate) depolymerase from Pseudomonas alcaligenes LB19. Biomacromolecules 3, 291-296 DOI ScienceOn |
21 | Kim, H.M., K.E. Ryu, K.S. Bae, and Y.H. Rhee. 2000a. Purification and characterization of extracellular medium-chain-length polyhydroxyalkanoate deolymerase from Pseudomonas sp. RY- 1. J. Biosci. Bioeng. 89, 196-198 DOI ScienceOn |
22 | Kim, H.J., D.Y. Kim, J.S. Nam, K.S. Bae, and Y.H. Rhee. 2003. Characterization of an extracellular medium-chain-length poly(3-hydroxyalkanoate) depolymerase from Streptomyces sp. KJ-72. Antonie van Leeuwenhoek 83, 183-189 DOI ScienceOn |
23 | Ramsay, B.A., I. Saracovan, J.A. Ramsay, and R.H. Marchessault. 1994. A method for the isolation of a microorganism producing extracellular long-side-chain poly(-hydroxyalkanoate) depolymerase. J. Environ. Polym. Degrad. 2, 1-7 DOI |
24 | Jendrossek, D., A. Schirmer, and H.G. Schlegel. 1997. Recent advances in characterization of bacterial PHA depolymerases, p. 89-101. In G. Eggink, A. Steinbüchel, Y. Poirier, B. Witholt (eds.), Proceedings of International Symposium on Bacterial Polyhydroxyalkanoates. NRC Research Press, Ottawa, Canada |
25 | Jendrossek, D. 2001. Microbial degradation of polyesters. Adv. Biochem. Eng. Biotechnol. 71, 293-325 DOI PUBMED |
26 | Kasuya, K.I., H. Mitomo, M. Nakahara, A. Akiba, T. Kudo, and Y. Doi. 2000. Identification of marine benthic P(3HB)-degrading bacterium isolate and characterization of its P(3HB) depolymerase. Biomacromolecules 1, 194-201 DOI ScienceOn |
27 | Kim, D.Y. and Y.H. Rhee. 2003. Biodegradation of microbial and synthetic polyesters by fungi. Appl. Microbiol. Biotechnol. 61, 300-308 DOI PUBMED |