• 제목/요약/키워드: 16S-rRNA

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김치의 저장성 향상을 위한 항균활성 우수 유산균 선발 (Selection of Lactic Acid Bacteria with Antibacterial Activity for Extension of Kimchi Shelf-life)

  • 최학종;김유진;이나라;박해웅;장자영;박성희;강미란;김현주;이종희;이종훈;변유량;김태운
    • 한국식품영양과학회지
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    • 제43권2호
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    • pp.328-332
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    • 2014
  • 김치는 살균공정 없이 유통되기 때문에 유통과정에서도 발효가 진행되는 특성을 가지고 있어 김치의 산도가 계속 증가하여 김치의 상품성이 저하되는 문제점을 안고 있다. 본 연구에서는 김치발효과정 중 과도한 산생성에 관여하는 균주선발과 더불어 이들 균주의 성장을 억제할 수 있는 항균활성을 지닌 균주를 김치로부터 선발하고자 하였다. 우선 김치과숙 관련 균주를 선발한 결과 Lb. plantarum 20-10, Lb. plantarum A-1, P. pentosaceus A-2, P. pentosaceus A-5, Lb. plantarum A-6, P. pentosaceus B-11로 동정이 되었다. 이들 균주를 억제할 수 있는 항균활성을 지닌 균주를 적숙기 김치로부터 선발한 결과 Lc. lactis, Lb. brevis 두 균주가 항균활성이 우수한 것으로 나타났다. 이들 균주의 김치 종균으로서의 적용 가능성을 살펴본 결과 모든 균주가 PH 3.5에서의 내산성, 3% NaCl에서의 내염성, $4^{\circ}C$에서의 생육가능성을 나타내었다.

Comparative analysis of the microbial communities in raw milk produced in different regions of Korea

  • Kim, In Seon;Hur, Yoo Kyung;Kim, Eun Ji;Ahn, Young-Tae;Kim, Jong Geun;Choi, Yun-Jaie;Huh, Chul Sung
    • Asian-Australasian Journal of Animal Sciences
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    • 제30권11호
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    • pp.1643-1650
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    • 2017
  • Objective: The control of psychrotrophic bacteria causing milk spoilage and illness due to toxic compounds is an important issue in the dairy industry. In South Korea, Gangwon-do province is one of the coldest terrains in which eighty percent of the area is mountainous regions, and mainly plays an important role in the agriculture and dairy industries. The purposes of this study were to analyze the indigenous microbiota of raw milk in Gangwon-do and accurately investigate a putative microbial group causing deterioration in milk quality. Methods: We collected raw milk from the bulk tank of 18 dairy farms in the Hoengseong and Pyeongchang regions of Gangwon-do. Milk components were analyzed and the number of viable bacteria was confirmed. The V3 and V4 regions of 16S rRNA gene were amplified and sequenced on an Illumina Miseq platform. Sequences were then assigned to operational taxonomic units, followed by the selection of representative sequences using the QIIME software package. Results: The milk samples from Pyeongchang were higher in fat, protein, lactose, total solid, and solid non-fat, and bacterial cell counts were observed only for the Hoengseong samples. The phylum Proteobacteria was detected most frequently in both the Hoengseong and Pyeongchang samples, followed by the phyla Firmicutes and Actinobacteria. Notably, Corynebacterium, Pediococcus, Macrococcus, and Acinetobacter were significantly different from two regions. Conclusion: Although the predominant phylum in raw milk is same, the abundances of major genera in milk samples were different between Hoengseong and Pyeongchang. We assumed that these differences are caused by regional dissimilar farming environments such as soil, forage, and dairy farming equipment so that the quality of milk raw milk from Pyeongchang is higher than that of Hoengseong. These results could provide the crucial information for identifying the microbiota in raw milk of South Korea.

Optimization of Indole-3-Acetic production by phosphate solubilization bacteria isolated from waste mushroom bed of Agaricus bisporus

  • Walpola, Buddhi Charana;Noh, Jae-Geun;Kim, Chan Kyem;Kyung, Ki-Cheon;Kong, Won-Sik;Yoon, Min-Ho
    • 한국버섯학회지
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    • 제11권2호
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    • pp.53-62
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    • 2013
  • A total of 35 phosphate solubilizing bacterial strains were isolated from waste mushroom bed of Agaricus bisporus in Buyeo-Gun, Chungnam and screened for the production of indole acetic acid (IAA). The best IAA producing strain was identified as Pantoea rodasii using 16S rRNA analysis. In addition to the IAA production, this strain could act as an efficient phosphate solubilizer (1100 ${\mu}g$ $ml^{-1}$ after 5 days of incubation) also. The selected strain was cultured under different conditions in order to assess the optimum conditions for maximum IAA production. The nutrient broth (NB) medium was recorded as the best medium, where the maximum IAA production (229 ${\mu}g$ $ml^{-1}$) was recorded at the start of stationary phase (12 hours after inoculation) of the bacteria growth. The performance of the strain was found to be maximum at the temperature of $30^{\circ}C$ followed by $25^{\circ}C$. IAA production was found to be increased with increasing tryptophan concentration (from 0.1 to 0.6%), however beyond this limit, a slight reduction in IAA production was observed. The strains' ability to produce IAA was further confirmed by extraction of crude IAA and subsequent TLC analysis. A specific spot from the extracted IAA preparation was found corresponding with the standard spot of IAA with same $R_f$ value. The results of HPLC analysis conducted in identifying and quantifying the IAA production more precisely, are in agreement with the results of the assessment done with colorimetric method. As revealed by the results of the pot experiment, the isolated strain could significantly enhance the growth (as measured by shoot and root growth) of mung bean plants compared to that of non-inoculated plants. Therefore it can be concluded that the present strain, Pantoea rodasii has great potential to be used as bio-inoculants.

내열성 한천분해효소를 생산하는 해양세균의 분리 및 특성 (Isolation and Characterization of a Marine Bacterium Producing Thermotolerant Agarase)

  • 박근태;이동근;김남영;이어진;정종근;이재화;허문수;이정현;김상진;이상현
    • 생명과학회지
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    • 제15권6호
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    • pp.884-888
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    • 2005
  • 제주도 동북해역의 해수에서 한천분해활성을 보어는 해양성 세균을 분리하였으며 16S rDNA유전자 염기서열분석과 형태학적, 배양적 및 생화학적 특징을 조사하여 해양기원의 Agarivorans 속에 속하는 균주임을 확인하고 Agarivorans sp. JA-1으로 명명하였다. Agarivorans sp. JA-1이 생성하는 한천 분해효소(agarase)는 한천의 존재유무에 상관없이 발현되며 성장의존성인 것으로 확인되었고 효소활성을 위한 최적 pH는 pH 8.04 (50 mM glycine NaOH 완충용액)이고 최적 온도는 $40^{\circ}C$로 나타났다. 한천분해효소는 기능성올리고당 생산이 가능한 베타-한천분해효소이며 내열성을 보여 $60^{\circ}C$까지 $80\%$ 이상 그리고 $80^{\circ}C$까지 $70\%$의 잔존활성을 보이는 것으로 나타났다. 분리한 Agarivorans sp. JA-1 균주가 나타내는 한천분해효소를 이용하여 $40^{\circ}C$ 이상에서 액체상태로 있는 한천을 이용한 기능성올리고당 생산에 유용한 것으로 생각되었다.

Bacillus subtilis BC-P1 균주를 이용하여 제조한 청국장의 발효 및 품질 특성분석 (Fermentation and Quality Characteristics of Cheonggukjang Fermented with Bacillus subtilis BC-P1)

  • 박성용;방미애;오병준;박정훈;송원섭;최경민;정의수;부희옥;조승식
    • 미생물학회지
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    • 제49권3호
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    • pp.262-269
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    • 2013
  • 본 연구진은 청국장에서 수종의 미생물을 분리하였으며, 이중 소화 효소능이 뛰어난 균주를 선별하였으며, 유전학적 분석결과를 통해 본 균주가 Bacillus 속 균주임을 확인하고 Bacillus subtilis BC-P1이라 명명하였다. Bacillus subtilis BC-P1을 starter로 사용하여 청국장을 제조하였으며, protease, xylanase, chitinase activity, 혈전 분해능, 영양성분 분석 및 아미노산 분석을 통하여 B. subtilis BC-P1를 starter로 활용한 청국장 제품의 개선 가능성을 타진하였다. Bacillus subtilis BC-P1를 starter로 제조한 청국장은 기존 제품에 비해 우수한 소화효소 생성능을 보였으며, 특히 혈전분해효소 생성능이 우수함을 확인하였고, 대조군에 비해 증가된 환원당 및 총 아미노산 함량을 확인 할 수 있었다. 따라서 본 균주를 starter로 하여 청국장을 제조할 경우 기능성분, 생리활성의 증가, 품질 향상을 기대할 수 있을 것으로 판단되며, 향후 대규모 생산시 균주, 제조 조건에 관한 연구가 필요할 것으로 사료된다.

Cholesterol Lowering Effect of Lactobacillus plantarum Isolated from Human Feces

  • Ha Chul-Gyu;Cho Jin-Kook;Lee Chi-Ho;Chai Young-Gyu;Ha Young-Ae;Shin Shang-Hun
    • Journal of Microbiology and Biotechnology
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    • 제16권8호
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    • pp.1201-1209
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    • 2006
  • The purpose of this study was to isolate probiotic lactic acid bacteria (LAB) that produce bile salt hydrolase (BSH), and to evaluate its effects on serum cholesterol level. One-hundred-twenty bacterial colonies were initially isolated from human feces, and five strains were selected after screening based on their resistance to acids, tolerance against bile salts, and inhibitory activity on Escherichia coli. The Lactobacillus plantarum strain with the highest level of BSH activity was identified using 16S rRNA sequences, and was named L. plantarum CK 102. L. plantarum CK 102 at a level of 1.36$\times$10$^8$cfu/ml survived in pH 2 buffer for 6 h and exhibited excellent tolerance for bile salt. Coculturing the strain with E. coli in MRS broth resulted in strong inhibition against growth of E. coli at 18 h. Furthermore, the potential effect of CK 102 on serum cholesterol level was evaluated in rats. Thirty-two rats [Sprague-Dawley (SD) male, 129$\pm$l g, 5 weeks old] were divided into four groups of eight each. For six weeks, Group 1 was fed a normal diet (negative control); Group 2 was fed a cholesterol-enriched diet (positive control); Group 3 was fed a cholesterol-enriched diet plus L. plantarum CK 102 at 1.0$\times$10$^7$cfu/ml; and Group 4 was fed a cholesterol-enriched diet plus L. plantarum CK 102 at 5.0$\times$10$^7$cfu/ml. Blood samples were collected, serum lipids were analyzed, and weights of the organs were measured. Total blood cholesterol level, triglyceride, LDL-cholesterol, and free-cholesterol values were lower in rats that were fed 1. plantarum CK 102 than in those not fed L. plantarum CK 102. This cholesterol lowering effect implies that L. plantarum CK 102 could be utilized as an additive for health-assistance foods. In conclusion, these results suggest that the 1. plantarum CK 102 isolated could be used commercially as a probiotic.

서울시 수계시설에서 분리된 Legionella pneumophila의 분자역학적 특성 (Molecular Epidemiology of Legionella pneumophila Isolated from Water Supply Systems in Seoul, Korea)

  • 전수진;정지헌;승현정;김창규;진영희;오영희;최성민;채영주
    • 한국환경보건학회지
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    • 제39권2호
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    • pp.166-177
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    • 2013
  • Objectives: The genus Legionella is common in aquatic environments. Some species of Legionella are recognized as potential opportunistic pathogens for human, notably Legionella pneumophila that causes, Legionellosis. Thus, we investigated the contamination of Legionella pneumophila on water supply systems in Seoul, including cooling towers, public baths, hospitals and fountains. Methods: The existence of 16S rRNA and mip gene of L. pneumophila was confirmed in the genome of the isolated strains by PCR. Results: During the summer season of 2010 and 2011, Legionella pneumophila were detected from 163 samples (21.1%) out of 772 samples collected. Among the 163 strains of L. pneumophila, eighty one isolates belonged to serogroup 1 (57.4%), 23 isolates were serogroup 5 (16.3%), 21 isolates were serogroup 6 (14.9%), 8 isolates were serogroup 2 (5.79%), and 8 isolates were identified in serogroup 3 (5.7%). Through PFGE (pulsed-field gel electrophoresis) analysis using Sfi I, genetic types of L. pneumophila were classified into five (A to E) patterns by the band similarity with excess of 70% from public baths. Conclusions: The PFGE patterns of the serotypes showed a tendency for diversity of L. pneumophila. Our results suggest the existence of serological and genetic diversity among the L. pneumophila isolates.

식물병원성 진균을 억제하는 근권세균의 항진균능과 식물생장촉진능 (Antifungal Activity and Plant Growth Promotion by Rhizobacteria Inhibiting Growth of Plant Pathogenic Fungi)

  • 정택경;김지현;송홍규
    • 미생물학회지
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    • 제48권1호
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    • pp.16-21
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    • 2012
  • 여러 식물의 근권에서 세균 균주들을 분리하여 이들의 항진균성 물질 생성능을 조사하였다. 분리균주 중 Fusarium oxysproum을 포함한 5가지 주요 식물병원성 진균에 대한 생장저해가 우수한 7개 균주를 16S rRNA 유전자 염기서열로 동정하였다. 이들 중 Paenibacillus peoriae RhAn32, Pseudomonas otitidis TK1과 Bacillus cereus TK2가 가장 넓은 생장 저해범위를 나타내었으며 항진균성 물질 중 siderophore 생성능은 P. otitidis TK1이 3.21 mM/ml로 가장 높았고 HCN은 Pseudomonas koreensis Rh2와 Rh7 균주만이 생성하였으며 Brevibacterium frigoritolerans EnA9와 P. peoriae RhAn32는 각각 1558.9와 $1436.7{\mu}M$ glucose/min/mg protein의 높은 chitinase 활성을 나타내었다. P. otitidis TK1과 P. peoriae RhAn32의 항진균능을 진균과의 공동배양을 통해 정량분석한 결과 세 종류의 Fusarium oxysproum의 생장을 유의성 있게 저해하였다. P. otitidis TK1은 식물생장을 촉진하는 호르몬인 auxin의 생성능도 가장 높았는데 이 균주를 4주 자란 토마토 유묘에 F. oxysporum f. sp. lycopersici와 동시에 접종하여 8주간 재배하였을 때 줄기와 뿌리 길이 및 습윤 중량이 비접종 대조군에 비해 각각 45.7, 64.9와 118%로 유의성 있게 증가하였다. 따라서 이 균주들은 유기합성농약을 대체하면서 식물생장을 촉진하는 미생물제로서의 적용이 가능할 것으로 기대된다.

신종 해양미생물 Planococcus sp. 107-1T의 분류학적 특성 분석 (Characterization of the Novel Marine Bacterium Planococcus sp. 107-1T)

  • 김동균;정현경;김영옥;공희정;남보혜;김주원;김영삼
    • 한국수산과학회지
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    • 제55권5호
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    • pp.612-624
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    • 2022
  • A novel Gram-positive, motile, non-spore forming aerobic marine bacterium, designated 107-1T was isolated from tidal mud collected in Gyehwa-do, South Korea. Cells of strain 107-1T were short rod or coccoid, oxidase negative, catalase positive and grew at 10-40℃ (with optimum growth at 25-30℃). It utilized menaquinones MK-7 and 8 as its respiratory quinones and its major fatty acids were anteiso-C15:0 (37.9%), iso-C16:0 (14.9%), and iso-C14:0 (10.8%). Phylogenetic analysis based on 16S rRNA gene sequences revealed a distinct clade containing strain 107-1T and close species Planococcus ruber CW1T(98.52% sequence similarity), P. faecalis KCTC 33580T(97.67%), P. kocurii ATCC 43650T(97.48%), P. donghaensis DSM 22276T(97.47%), and P. halocryophilus DSM 24743T(97.37%). Strain 107-1T contains one circular chromosome (3,513,248bp in length) with G+C content of 44.6 mol%. Estimated ranges for genome to genome distance, average nucleotide identity, and average amino acid identity comparing strain 107-1T with close taxa were 20.3-34.8%, 77.9-86.9%, and 73.6-92.8%, respectively. Based on polyphasic analysis, strain 107-1T represents a novel species belonging to the genus Planococcus.

학교식당 및 교실배식 과정 전·후 미생물 오염에 관한 연구 (Assessment Report of Bacterial Contamination in Some School Dining Services with Table Swabs and Air Samples)

  • 정해용;손주혜;이재윤;이인애;고지연;고나윤;박성준;고광표;김성균
    • 한국환경보건학회지
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    • 제41권6호
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    • pp.397-404
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    • 2015
  • Objectives: The aim of this study is to investigate microbial contamination in the school food service environment for the assessment of microbial food safety. Methods: We collected both swab samples from tables and desks and airborne bacterial samples from an elementary school (School A) and a high school (School B). Heterotrophic plate count, total coliform, Staphylococcus aureus, and Bacillus cereus were measured with selective media to quantify microbial concentration. PCR assay targeting 16S rRNA genes was performed to identify the strains of S. aureus and B. cereus isolated. In addition, we made a food service checklist for the locations to evaluate the food service environment. A Wilcoxon test was employed to examine the differences in microbial concentration between before lunchtime and afterwards. Results: Heterotrophic plate counts showed higher levels after-lunch compared to before-lunch at School B. However, levels of S. aureus were higher in the after-lunch period (p<0.05) in both classrooms and in the cafeteria in School A. B. cereus was only sparsely detected in School B. Several samples from food dining carts were found to be contaminated with bacteria, and facilities associated with food delivery were found to be vulnerable to bacterial contamination. Although microbial concentrations in the air showed little difference between before- and after-lunchtime in the cafeteria in School A, those in classrooms were greater after-lunchtime at both schools. Conclusion: Our results suggested that the microbial safety in schools after lunchtime of concern. Necessary preventive measures such as hygiene education for students and food handlers should be required to minimize microbial contamination during food service processes in schools.