• Animal cells and systems
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• 제4권1호
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• pp.57-62
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• 2000

Soil samples were collected in thirteen Manitoba boreal forest sites. Spatial distribution of chytrids from diverse boreal forest microhabitats was investigated by baiting with jack pine pollen. After baiting, the pollen was surveyed for chytrids for 8 ten day period and individual species were counted. Total infestations of pollen by chytrids ranged from 5.8% to 90.2% from various soils. Each site with high infestation was characterized by litter with high needle content while mineral soil or soil with limited organic matter yielded low levels of pollen infestation. Species diversity tended to be higher in soils with higher pollen infestation and lower in soils with lower pollen infestation. Lower diversity was generally observed in mineral soils or soils with a limited organic horizon comprised, in part, of broad leaf litter. Based on coefficients of association and species in common among species across the collection sites, it was possible to relate dominant species assemblages in site groups. These species assemblages in the site groups suggest that the chytrids are distributed by litter and soil types. It can be concluded that the substratum characteristics of litter types and availability of litter may be important in describing chytrid distribution in boreal forest sites.

• 한국균학회지
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• 제48권4호
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• pp.445-456
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• 2020

Fungal species belonging to the genus Penicillium are indigenous to a wide range of natural environments. Since the first published reports detailing the discovery of Penicillium, new species have been identified in various countries, including Korea. We present here a full characterization of five species of Penicillium that were previously unreported in Korea. Based on the morphologic characteristics and sequences of genes encoding fungal ��-tubulin and calmodulin, we identified five Penicillium species, including P. hetheringtonii, P. sublectaticum, and P. jacksonii, which have been unrecorded in Korea, and confirming P. maximae and P. cremeogriseum, as the endophytic fungi isolated in Gyeongsang province, Korea. In this article, we provide detailed morphological descriptions of these fungal species.

• Journal of Species Research
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• 제11권1호
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• pp.47-60
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• 2022

This study is based on crane fly specimens collected during more than 80 years, from 1937 through 2019, and are in collections maintained at the United States National Museum, Smithsonian Institution, Washington DC, USA; at Korea University collection, Seoul, South Korea, and the National Institute of Biological Resources, Incheon, South Korea. Three species belonging to genus Phylidorea Bigot, 1854 originally were described from North Korea and in total four species were known from the Peninsula. Phylidorea (Phylidorea) multidentata (Alexander, 1938) is a Korean endemic. We are adding P. (P.) melanommata (Alexander, 1921) to the list of Korean species, which was previously recorded from Japan and Far East of Russia. We present general information on genus and subgenera, redescriptions of species based on Korean specimens, illustrations of both sexes, elevation range, period of activity, habitat information, general distribution, and a distribution map for the Korean Peninsula (including North Korea) for each species.

• 생태와환경
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• 제56권4호
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• pp.363-374
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• 2023

우리나라를 대표하는 생물종 풍부도를 도출하는 데에는 상대적으로 짧은 생물종 현장 조사 역사와 여러 기관에서 분야별로 수집한 조사 자료가 산재되어 있다는 한계가 있다. 본 연구에서는 환경부 산하기관들이 보유하고 있는 관속식물 조사 데이터를 취합하여 100년 이상의 시계열 데이터세트를 구축하였다. 자료 통합은 종명, 위치, 시간(연도) 등 최소한의 기준을 적용해 데이터 검증 및 보정 과정을 거쳤다. 통합한 식물종 자료에 따르면 국내 식물종에 대한 체계적인 수집은 2000년 이후에 주로 이루어졌으며, 이러한 조사를 통해 발견된 식물종의 수는 최근 수렴하는 경향을 보이고 있었다. 이는 우리나라에서 국가 차원의 생물종 다양성을 도출할 수 있는 조건이 충분히 갖추어지고 있음을 시사한다. Chao 2 방법을 이용하여 예측한 1951년부터 70년간의 토착식물의 종 풍부도는 3,182.6으로 추정되었다. 이 추정치를 얻기 위해서는 최소 7년의 누적 기간이 필요하다. 본 연구의 식물종 풍부도는 향후 우리나라의 종 풍부도 변화를 연구하는데 기준이 될 수 있다. 또한 사용한 종 풍부도 추정 방법과 통합자료는 지자체 수준 등의 지역 생물다양성을 도출하는 데에도 적용할 수 있을 것으로 생각한다.

• 한국균학회소식:학술대회논문집
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• 한국균학회 2014년도 춘계학술대회 및 임시총회
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• pp.25-25
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• 2014

Koji molds are comprised of yellow, black and white. Black and white koji molds were recently re-visited by this author and it is concluded that they consists of Aspergillus luchuesnsis, A. niger and A. tubingensis, and the most important species for alcoholic beverage production is A. luchuensis. In the case of yellow koji mold, it is comprised of Aspergillus oryzae, A. sojae and A. tamari. In the case of A. sojae, the species is scarcely isolated from nature and rarely used for industry in Korea. Aspergillus tamari is often isolated from traditional Korean Meju, a fermented soybean product, and the classification of the species is clear. However, in the case of A. oryzae, differentiation between A. oryzae and A. flavus is still in controversy. In this study, we collected 415 strains of Aspergillus flavus/oryzae complex from air, rice straw, soybean, corn, peanut, arable soil and Meju in Korea and we examined the aflatoxin producing capacity of the strains. The norB-cypA, omtA and aflR genes in the aflatoxin biosynthesis gene cluster were analyzed. We found that 367 strains (88.4%) belonged to non-aflatoxigenic group (Type I of norB-cypA, IB-L-B-, IC-AO, or IA-L-B- of omtA, and AO type of aflR), and only 48 strains (11.6%) belonged to aflatoxin-producible group (Type II of norB-cypA, IC-L-B+/B- or IC-L-B+ of omtA, and AF type of aflR). In the case of A. flavus/oryzae strains from Meju, almost strains (178/192, 92.7%) belonged to non-aflatoxigenic group and only 14 strains (7.3 %) belonged to aflatoxin-producible group. It is proposed in this study that non-aflatoxigenic strain from Meju is classified as A. oryzae, considering that Meju is food material.

• Journal of Microbiology and Biotechnology
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• 제33권6호
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• pp.753-759
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• 2023

The genus Paenibacillus contains a variety of biologically active compounds that have potential applications in a range of fields, including medicine, agriculture, and livestock, playing an important role in the health and economy of society. Our study focused on the bacterium SS4^T (KCTC 43402^T = GDMCC 1.3498^T), which was characterized using a polyphasic taxonomic approach. This strain was analyzed using antiSMASH, BAGEL4, and PRISM to predict the secondary metabolites. Lassopeptide clusters were found using all three analysis methods, with the possibility of secretion. Additionally, PRISM found three biosynthetic gene clusters (BGC) and predicted the structure of the product. Genome analysis indicated that glucoamylase is present in SS4^T. 16S rRNA sequence analysis showed that strain SS4^T most closely resembled Paenibacillus marchantiophytorum DSM 29850^T (98.22%), Paenibacillus nebraskensis JJ-59^T (98.19%), and Paenibacillus aceris KCTC 13870^T (98.08%). Analysis of the 16S rRNA gene sequences and Type Strain Genome Server (TYGS) analysis revealed that SS4^T belongs to the genus Paenibacillus based on the results of the phylogenetic analysis. As a result of the matrix-assisted laser desorption/ionization-time-of-flight mass spectrometry (MALDI-TOF/MS) results, SS4^T was determined to belong to the genus Paenibacillus. Comparing P. marchantiophytorum DSM 29850^T with average nucleotide identity (ANI 78.97%) and digital DNA-DNA hybridization (dDDH 23%) revealed values that were all less than the threshold for bacterial species differentiation. The results of this study suggest that strain SS4^T can be classified as a Paenibacillus andongensis species and is a novel member of the genus Paenibacillus.

• Journal of Species Research
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• 제13권1호
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• pp.10-31
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• 2024

In this study, 11 strains of epilithic cyanobacteria belonging to six unrecorded species in Korea were isolated from gravel submerged in freshwater of seven collection sites in Korea. The morphological characteristics of the six species isolated in this study were consistent with the type strain of each species, and the similarity of the 16S rRNA gene sequences with the type strain of each species were 98.8-100%. In the phylogenetic tree using the 16S rRNA gene sequences, the 11 strains of these six species formed the same cluster as the strains of each species. The habitat of each previously reported species is mainly the soil surface, but all Korean strains appeared from the gravel submerged in freshwater. As a result of the morphological, ecological, and molecular analyses, these six species of cyanobacteria were identified as Geminocystis papuanica, Allocoleopsis franciscana, Ancylothrix terrestris, Klisinema persicum, Scytolyngbya timoleontis, and Shackletoniella antarctica, which were added as newly recorded species in Korea.

• Journal of Microbiology and Biotechnology
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• 제19권3호
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• pp.250-256
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• 2009

Acinetobacter strain $KNF2022^T$ was isolated from tobacco plant roots during the screening of antiviral substances having inhibitory effects on Tobacco mosaic virus (TMV) and examined by phenotypic, chemotaxonomic, and genetic characterization. It was a nonmotile, Gram-negative bacterium. This strain contained Q-9 as the main respiratory quinone. The major cellular fatty acids of the isolate were 16:0, 18:1 w9c, and 16:1 w7c/15 iso 2OH. The DNA base composition was 44 mol%. Phylogenetic analysis based on the 16S rRNA sequence revealed that the isolate formed an evolutionary lineage distinct from other Acinetobacter species. Based on the evaluation of morphologic, physiologic, and chemotaxonomic characteristics, DNA-DNA hybridization values, and 16S rRNA sequence comparison, we propose the new species Acinetobacter antiviralis sp. nov., the type strain of which is $KNF2022^T$ (=KCTC $0699BP^T$).

• 환경생물
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• 제23권2호
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• pp.93-97
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• 2005

Zooplankton dynamics were investigated based on samples collected monthly during the period between November 1998 and October 1999 at 15 stations in Gwangyang and Sachon Bay. Zooplankters were quantitatively collected with horizontal towing through the surface and oblique hauling from the bottom to surface at each station, simultaneously. A total of 88 taxa of zooplankton were distributed and 60 taxa were identified to species. Copepods showed the prosperity in species number of 52 species. Number of taxa occurred in samples hauled obliquely always showed $2\~5$ more species than those captured in the surface except for stations near the Namhae bridge. In waters near Namhae bridge, fast current seemed to mix waters vertically. Seasonally these differences were more distinct in the spring and summer than those in other seasons possibly due to the stratification in warmer seasons. In quantitative aspects, differences between two layers seemed to be obscure. Spatial and temporal variations in species diversity of copepods showed more prosperity in pelagic realm than those in the surface. Our collection carrying out in day time might be one of the important reason to cause these differences in zooplankton dynamics between two layers.

• 한국토양동물학회지
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• 제11권1_2호
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• pp.30-47
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• 2006

The taxonomic revision was made on the tribe Harpalini (Coleoptera: Carabidae) in Korea. The Korean species are arranged after Kryzhanovskij et al. (1995) system with minor emendation. This present list is an attempt to bring together the available literature and collection-based information on fauna or taxa recorded from Korea (including some collections from the northern part of the Korean Peninsula, now North Korea). Materials examined for each species, an annotative checklist of Korean Carabidae, and the practical key to tribes and genera are provided. As a result, a total 86 species (and subspecies) belonging to 13 genera are recognized from the Korean Peninsula, of which one species (Harpalus egorovi) is new to South Korea. Distribution of two species, Harpalus tardus and H. tibeticus hsifanicus, are very doubtful in the Korean Peninsula. Besides, numerous new distribution records are given as based on materials deposited in various Universities and private collections.