• Journal of Ginseng Research
• /
• 제38권2호
• /
• pp.130-135
• /
• 2014

Background: Panax ginseng, the most famous medicinal herb, has a highly duplicated genome structure. However, the genome duplication of P. ginseng has not been characterized at the sequence level. Multiple band patterns have been consistently observed during the development of DNA markers using unique sequences in P. ginseng. Methods: We compared the sequences of multiple bands derived from unique expressed sequence tagsimple sequence repeat (EST-SSR) markers to investigate the sequence level genome duplication. Results: Reamplification and sequencing of the individual bands revealed that, for each marker, two bands around the expected size were genuine amplicons derived from two paralogous loci. In each case, one of the two bands was polymorphic, showing different allelic forms among nine ginseng cultivars, whereas the other band was usually monomorphic. Sequences derived from the two loci showed a high similarity, including the same primer-binding site, but each locus could be distinguished based on SSR number variations and additional single nucleotide polymorphisms (SNPs) or InDels. A locus-specific marker designed from the SNP site between the paralogous loci produced a single band that also showed clear polymorphism among ginseng cultivars. Conclusion: Our data imply that the recent genome duplication has resulted in two highly similar paralogous regions in the ginseng genome. The two paralogous sequences could be differentiated by large SSR number variations and one or two additional SNPs or InDels in every 100 bp of genic region, which can serve as a reliable identifier for each locus.

• 전기의세계
• /
• 제18권1호
• /
• pp.15-23
• /
• 1969

A lot of recent researches have shown that a Pseudo Random Binary Signal is a quite effective test signal to measure the impulse response of a plant. Generally speaking, however, such a response itself is not satisfactory to determine the appropriate control parameters or control inputs. Here, the author intends to estimate the unknown parameters of the First Order Plant with Dead Time by means of correlation method using M-sequence signal. The time constant T and the dead time L of the plant are eatimated with one tracking loop by automatically adjusting delay time .tau. of M-sequence signal according to variations of T and L. In this paper, a three level M-sequence signal is used as a test signal in order to avoid troublesome operations to calculate partial derivatives of a given performance index with respect to the parameters which are usually required in the Model Method. Several experiments with analogue computer using low pass filters as averaging circuits showed good results as expected.

• 전력전자학회논문지
• /
• 제20권4호
• /
• pp.305-312
• /
• 2015

In this study, inter-turn short fault models of interior permanent magnet synchronous motors (IPMSM) are developed by adding saliency modeling to surface-mounted permanent magnet motor models. The saliency model is obtained using the deformed flux models based on both fault-winding flux information and inductance variations caused by cross-flux linkages that depend on the distribution of the same phase windings. By assuming the balanced three-phase current injection, we obtain the positive and negative sequence voltages and the fault current in the positive and the negative synchronous reference frames. The output torque model is developed by adding the magnet and the reluctance torque, which are derived from the developed models. To verify the proposed IPMSM model with an inter-turn short fault, finite element method-based simulation and experimental measurement results are presented.

• Advances in aircraft and spacecraft science
• /
• 제7권2호
• /
• pp.151-168
• /
• 2020

The present study deals with the repair of composite structures by bonding composite patches. The composite structure is a carbon/epoxy laminate with stacking sequence [45/-45/0/90]S. The damaged zone is simulated by a central crack and repaired by bonding symmetrical composite patches. The repair is carried out using composite patches laminated from the same elemental folds as those of the cracked specimen. Three-dimensional finite element method is used to determine the energy release rate along the front of repaired crack. The effects of the repair technique used single or double patch, the stacking sequence of the cracked composite patch and the adhesive properties were highlighted on the variations of the fracture energy in mode I and mixed mode I + II loading.

• The Plant Pathology Journal
• /
• 제25권3호
• /
• pp.236-240
• /
• 2009

Tylenchulus semipenetrans, citrus nematode is an important phytopathogenic nematode and responsible for serious damage on citrus. However, little information is available about genetic variability of T. semipenetrans among different populations with variation of conventional diagnostic characteristics. In this study, we compared the morphometric and genetic characteristics among different populations. The mature female of T. semipenetrans collected in this study had thicker cuticle than those in the previous studies. In comparative sequence analysis of T. semipenetrans populations obtained from Jeju in Korea, we observed genetic variations within clones generated from single individuals. To determine whether variability among copies of nuclear ribosomal DNA sequences exists in the genome of T. semipenetrans, PCR-RFLP technique from individuals of Korean isolates with MseI and MspI restriction enzymes was used to prove experimentally that all populations have intra-specific variations. Restriction enzyme digestion created several fragments on 3.0% agarose gel corresponding to several haplotypes in all populations, though some populations displayed fragment deletion. The total length of fragments was larger than before digestion, indicating sequence heterogeneity within the genome of T. semipenetrans.

• 한국세라믹학회지
• /
• 제35권5호
• /
• pp.458-464
• /
• 1998

Variations of reaction sequence of $Pb(Zn_{0.6}Mg_{0.4})_{1/3}Nb_{2/3}O_3$[PZMN] with precusor mixing methods were ex-amined using X-ray diffraction and dielectric characteristics. In the present study three different types of precursor mixing methods (oxide mixing PbO+$ZnNb_2O_6+MgNb_2O_6$[Zn+MN] and PbO+(Zn,Mg)$Nb_2O_6$[ZMN] precursor mixing) were adopted. When the oxide mixing method was used for the PZMN synthesis a Zn-rich perovskite phase and pyrochlore phase were formed. Compared with PbO+ZN+MN precursor mixing method the PbO-ZMN precursor led to a lowering of the formation temperature for perovskite sin-gle phase. These variation of composition and formation temperature of the perovskite phase were dis-cussed in terms of the difference in the solid-reaction requence between these three different types of pre-cursor mixing.

• Plant Resources
• /
• 제3권3호
• /
• pp.211-218
• /
• 2000

Intraspecific genetic relationship of 19 variation types of the Yam (Dioscorea alata) classified by their external morphological characteristics such as leaf and tuber shape were assessed by DNA using random and specific primer. Twenty two out of 113 primers (100 random[10-mer] primers, two 15 mer [M13 core sequence, and (GGAT)$_4$ sequence]) had been used in PCR-amplification. Only 12 primers, however, were success in DNA amplification in all of the analyzed plants, resulting in 93 randomly and specifically amplified DNA fragments. The analyzed taxa showed very high polymorphisms(69 bands, 71.0 %), allowing individual taxon to be identified based on DNA fingerprinting. Monomorphic bands among total amplified DNA bands of each primer was low under the 50%. Similarity indices between accessions were computed from PCR(polymerase chain reaction) data, and genetic relationships among intraspecific variations were closely related at the levels ranging from 0.66 to 0.90. These DNA data were not matched well with those of morphological characters since they were divided into two major groups at the similarity coefficient value of 0.70. Therefore, Grouping of species into variation types by mainly morphological charactistics was suggested unreasonable.

• Genomics & Informatics
• /
• 제11권4호
• /
• pp.164-173
• /
• 2013

Genomic instability, which occurs through both genetic mechanisms (underlying inheritable phenotypic variations caused by DNA sequence-dependent alterations, such as mutation, deletion, insertion, inversion, translocation, and chromosomal aneuploidy) and epigenomic aberrations (underlying inheritable phenotypic variations caused by DNA sequence-independent alterations caused by a change of chromatin structure, such as DNA methylation and histone modifications), is known to promote tumorigenesis and tumor progression. Mechanisms involve both genomic instability and epigenomic aberrations that lose or gain the function of genes that impinge on tumor suppression/prevention or oncogenesis. Growing evidence points to an epigenome-wide disruption that involves large-scale DNA hypomethylation but specific hyper-methylation of tumor suppressor genes, large blocks of aberrant histone modifications, and abnormal miRNA expression profile. Emerging molecular details regarding the modulation of these epigenetic events in cancer are used to illustrate the alterations of epigenetic molecules, and their consequent malfunctions could contribute to cancer biology. More recently, intriguing evidence supporting that genetic and epigenetic mechanisms are not separate events in cancer has been emerging; they intertwine and take advantage of each other during tumorigenesis. In addition, we discuss the collusion between epigenetics and genetics mediated by heterochromatin protein 1, a major component of heterochromatin, in order to maintain genome integrity.

• 생명과학회지
• /
• 제30권2호
• /
• pp.122-128
• /
• 2020

Candida albicans가 칸디다 혈증의 주요 원인 균으로 알려져 있지만, 최근에는 non-albicans Candida (NAC)에 의한 심각한 감염이 증가하고 있다. NAC 중에서 C. glabrata는 두 번째로 병원성을 나타내는 원인 균이지만 C. glabrata의 구조, 역학 등의 기본적인 연구는 거의 없는 실정이다. 따라서 본 연구에서는 다양한 유형의 임상 표본으로부터 분리된 총 102개의 C. glabrata균주로 multi-locus sequence typing (MLST)을 수행하였다. FKS, LEU2, NMT1, TRP1, UGP1 및 URA3을 포함한 6개의 하우스키핑 유전자를 증폭하여 염기서열을 분석하였다. 총 3,345개의 DNA 염기서열 중 49개의 가변 염기서열 부위가 발견되었으며, 그 결과 102개의 균주에서 총 12개의 상이한 서열 유형을 확인하였고, 알려지지 않은 서열 유형(USTs) 중 UST1이 가장 많이 나타났다. 이 연구의 결과는 국내 C. glabrata 항생제 처방에 도움이 될 것으로 사료되며, 한국에서 유행하는 C. glabrata에 대한 추가 연구를 위한 기본 역학자료로 사용될 것으로 기대한다.

• 대한지리학회지
• /
• 제44권4호
• /
• pp.463-480
• /
• 2009

전라북도 완주군 봉동읍에 위치한 만경강 하안단구 역층 상부에 퇴적되어 있는 뢰스-고토양 연속층을 대상으로 토양분석과 대자율 측정, 입도 및 원소분석을 행하여 퇴적물의 풍화 특성과 기원지를 검토하였다. 봉동단면은 상부에서 하부로 Layer 1(고토양), Layer 2(뢰스), Layer 3(고토양) 그리고 하안단구 역층으로 이루어진다. 대자율은 뢰스층과 고토양층 사이에 뚜렷한 차이를 보이며, 입도분석 결과는 봉동단면이 하천이나 사면이동이 아니라 바람에 의해 운반되었으며, 중국 뢰스고원이나 대천뢰스보다 상당히 세립질임을 보여준다. 토양분석 중 유기물 함량만이 대자율과 유사한 변화를 보이며, 건조 토색보다는 습윤 토색이 뢰스-고토양 연속층의 특성을 보다 잘 반영한다. 주원소 및 희토류 원소 분석 결과, 봉동단면의 뢰스물질은 중국 뢰스고원과 동일한 기원지 또는 재이동된 물질에 의해 형성되었으며, 퇴적 이후에는 고온다습한 우리나라 기후 환경에서 중국 뢰스고원보다 심하게 풍화작용을 받았다.