• Title/Summary/Keyword: rarely species

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Rapid and simple method for DNA extraction from plant and algal species suitable for PCR amplification using a chelating resin Chelex 100

  • HwangBo, Kwon;Son, Su-Hyun;Lee, Jong-Suk;Min, Sung-Ran;Ko, Suk-Min;Liu, Jang-R.;Choi, Dong-Su;Jeong, Won-Joong
    • Plant Biotechnology Reports
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    • v.4 no.1
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    • pp.49-52
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    • 2010
  • A DNA extraction method using Chelex 100 is widely used for bacteria, Chlamydomonas, and animal cell lines, but only rarely for plant materials due to the need for additional time-consuming and tedious steps. We have modified the Chelex 100 protocol and successfully developed a rapid and simple method of DNA extraction for efficient PCR-based detection of transgenes from a variety of transgenic plant and algal species. Our protocol consists of homogenizing plant tissue with a pestle, boiling the homogenized tissue in a microfuge tube with 5% Chelex 100 for 5 min, and centrifuging the boiled mixture. The supernatant, which is used for PCR analysis, was able to successfully amplify transgenes in transgenic tobacco, tomato, potato, Arabidopsis, rice, strawberry, Spirodela polyrhiza, Chlamydomonas, and Porphyra tenera. The entire DNA extraction procedure requires <15 min and is therefore comparable to that used for bacteria, Chlamydomonas, and animal cell lines.

Current Status and Biogeographical Comments of Herpeto-Fauna at Hallasan National Park (한라산 국립공원의 양서.파충류 현황 및 생물지리학적 고찰)

  • Oh, Hong-Shik;Chang, Min-Ho;Kim, Byoung-Soo
    • Korean Journal of Environment and Ecology
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    • v.21 no.2
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    • pp.107-112
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    • 2007
  • This study was carried out to investigate the herpeto-fauna at Hallasan National Park. We conducted a survey at 1100 Resting places, Eoseungsaengak, Donnaeko, Eorimok, Yeongsil, Gwaneumsa and Seongpanak from April, 2006 to January, 2007. A series of four families and 5 species of amphibians and 4 families and 8 species of reptiles were observed. Amphiesma vibakari ruthveni, Takydromus wolteri, Scincella vandenburghi, Coluber spinalis and Hynobius quelpartensis which are rarely appearing inland but they were frequently observed by this survey. Also, we observed Sibynophis chinensis that only inhabits Jeju island with in Korea. Jeju island has both southern and northern boundary lines for amphibians and reptiles. Amphibians and reptiles in Jeju island have a different from those inland and valuable information for biogeograpy due to dissimilar climate and isolation from continental for a long time. It is not certain whether some amphibians and reptiles, Bufo gargarizans, Rana rugosa, R. plancyi, Elaphe rufodorsata and Takydromus amurensis, inhabit Jeju island, as recorded in previous literatures, so the research on current status of them has to be carried out immediately.

Ecological Environment of Native Habitats and Host Plant in Mistletoe (Viscum album var. coloratum) (겨우살이의 서식지생태환경과 기주식물)

  • Lee, Bo-Duk
    • Korean Journal of Plant Resources
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    • v.22 no.5
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    • pp.389-393
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    • 2009
  • Regional distribution of mistletoe (Viscum album var.coloratum) and its habitual environments were investigated in order to obtain the basal data on the artificial propagation to cope with its increasing consume for medicine. Mistletoes inhabited throughout the overall region of the South Korea investigated. They were parasitic mainly to the Quercus spp. including Q. serrata and rarely to the Castanea crenata var. dulcis, Prunus serrulata var. spontanea, Alnus japonica, and Pyrus pyrifolia, etc. Mistletoes were not observed on the conifers such as Pinus densiflora and Pinus koraiensis and some deciduous broad-leaved trees species such as Zelkova serrata, Diospyros kaki, Acer mono, Acer palmatum, and Morus alba. Their habitats were located from zero to 1,200 m above sea level nevertheless the direction or slope of the mountains, suggesting that artificial propagation can be carried out nation widely to the well-grown parasite tree species. Parasitic specificity related to the physical and chemical characteristic of the epidermal tissues will be studied further.

Evaluation of Airborne Bacteria and Fungi in Surgical Areas at the Animal Hospital

  • Jeong, Seongsoo;Kang, Yuntae;Hwang, Yawon;Yoo, Seungwon;Jang, Hyejin;Oh, Hyejong;Kang, Jihoon;Chang, Dongwoo;Na, Kijeong;Kim, Gonhyung
    • Journal of Veterinary Clinics
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    • v.34 no.2
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    • pp.76-81
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    • 2017
  • Studies on the concentration of airborne microorganisms in human medicine as a part of a study on the nosocomial infections have been conducted properly, but in veterinary medicine, there has been rarely performed in Korea to the best of study's knowledge. The purpose of this study was to evaluate the distribution of airborne microorganisms and to identify their species in different places in the animal hospital to alert the necessity of thorough cleanliness management. This study evaluated the concentrations of airborne bacteria and fungi in hospital areas, such as patient waiting room, internal medicine ward, surgical ward and radiological diagnostic ward. The concentration of bacteria and fungi was significantly lower (p < 0.05) in two operating rooms and higher in the patient waiting room. The dominant species of bacteria were Micrococcus spp., Staphylococcus spp., and fungi were Penicillium spp., Dermatophyte mold. Animal hospitals need to perform proper procedures for disinfection, sterilization, and environmental cleaning as well as appropriate employee training and monitoring in order to the maximum prevention of the risk of nosocomial and surgical infections.

Spore morphology of Korean Polypodiaceae (한국산 고란초과 식물의 포자 형태)

  • Lim, Jin A;Kim, Chul Hwan;Kwak, Min Ju;Sun, Byung-Yun
    • Korean Journal of Plant Taxonomy
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    • v.36 no.1
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    • pp.1-19
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    • 2006
  • Description of spore morphology of Korean Polypodiaceae has on LM and SEM and key to the genera are provided. Korean Polypodiaceae monad, monolete with bilateral symmetry, bipolar and oblete spore except for Loxogramme grammitoides having trilete spore with radial symmetry. In spore wall structure, exopore showed variable patterns enough to distinguish genera. Perispore was found in all the species examined. The patternof perispore and exospore was most similar in all the species examined except Crypsinus, Pyrrosia hastata ans P. linearifolia. The perispores of Crypsinus, Pyrrosia hastata and P. linearifolia were echinate and gemmate, rugulate, and verrucate respectively. In term of exospore wall sculpturing, Polypodium and Loxogramme showed fossulate, Lepisorus, rugulate with irregular verrucate, Crypsinus ans Coloysis showed psilate or rarely verrucate in the latter, Neocheiropteris ensata showed dense small verrucate, Lemmaphyllum microphyllum showed complex reticulate and Pyrrosia showed verrucate or psilate.

A Study on the Transition Process of Fisheries Industry, Fisheries Institute of West Coast of Korea (Around the Gogunsan Islands and adjacent Area) (우리 나라 서해안(西海岸)의 수산업(水產業) 및 수산교육기관(水產敎育機關)의 변천과정(變遷過程)에 관한 사적(史的) 고찰(考察) (고군산(古群山) 군도(群島)의 인접지역(隣接地域)을 중심(中心)으로))

  • Lee, Kil-Rae
    • Journal of Fisheries and Marine Sciences Education
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    • v.11 no.1
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    • pp.24-42
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    • 1999
  • I have studied historical transition process of fisheries industries, fisheries Institute in abreast of developing fisheries industries of west coast of Korea since 1910 year with regard to the Gogunsan Is. The results were summarized as follows. In 1910 year, fishery industry has been carried out shifting fishing gear e.g set-net in shallow waters, small stow net, small seine net adapting to the tophorgrapical feature, shape of coast, oceanic condition, however, the fishing gear and fishing method were undeveloped, so that, Japanese fishermen had been exploited fisheries resources penetrating the fishing ground. Most important species were lot of captured croaker, cod, spanish mackeral, sea abream, herring in coastal sea. nowaday, squid, anchovy, shrimp, crab, pompret were much captured. The species were captured in 18 century were not captured. It is rarely than that period. Fishereis aquatic culture had been not farmed till 1960 year, but sea laver, shrimp, crab, had been breeded 1970 year also, the fresh water fish e.g. eel, cat-fish had been breeded activately. The fisheries processing industry were composed of salt. icing, dry, method. the salted fish industry had been prevailed at Gangyng, Kwangchon, Kunsan, Julpo comparatively. The fisheries institute had been established at Kunsan at first, but institute established in other region had been abolished in a short time. This phenomenon was related with development of fisheries resources. The western coast fisheries industries had been wasted of decreasing of fisheries resources, variation of environment. Accordingly, the study of preserving the marine resources. educated man power who engaged in fisheries field have to accomplish. Sea was dying with reason of loss of mud in west coast factory waste, waste of life the increase of accident of sea polluted, each illegal fishing industry physical and chemical reason etc. in this respect, Kusan maritime college, fisheries developing agency, institute have to take important role for developing fishing industry.

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Four Taeniasis saginata Cases Diagnosed at a University Hospital in Korea

  • Won, Eun Jeong;Shin, Ju Hyeon;Lee, Yu Jeong;Kim, Moon-Ju;Kang, Seung Ji;Jung, Sook In;Kim, Soo Hyun;Shin, Jong Hee;Chai, Jong-Yil;Shin, Sung-Shik
    • Parasites, Hosts and Diseases
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    • v.57 no.3
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    • pp.313-318
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    • 2019
  • In recent years, the taeniasis has been rarely reported in the Republic of Korea (Korea). But in this study, we intend to report 4 taeniasis cases caused by Taenia saginata during a 5-month period (February to June 2018) at a unversity hospital in Gwangju, Korea. Worm samples (proglottids) discharged from all cases were identified by phenotypic and molecular diagnostics. Mitochondrial cytochrome c oxidase subunit I sequences showed 99.4-99.9% identity with T. saginata but, differed by 4% from T. asiatica and by 7% from T. multiceps, respectively. We found that tapeworms in 2 cases (Cases 2 and 3) yielded exactly the same sequences between them, which differed from those in Cases 1 and 4, suggesting intra-species variation in tapeworms. These taeniasis cases by T. saginata infection in this study, which occurred within a limited time period and region, suggest the possibility of a mini-outbreak. This study highlights the need for further epidemiological investigation of potentially overlooked cases of T. saginata infection in Korea.

Annual and spatial variabilities in the acorn production of Quercus mongolica

  • Noh, Jaesang;Kim, Youngjin;Lee, Jongsung;Cho, Soyeon;Choung, Yeonsook
    • Journal of Ecology and Environment
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    • v.44 no.4
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    • pp.229-240
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    • 2020
  • Background: Genus Quercus is a successful group that has occupied the largest area of forest around the world including South Korea. The acorns are an important food source for both wild animals and humans. Although the reproductive characteristics of this genus are highly variable, it had been rarely studied in South Korea. Therefore, in Seoraksan and Odaesan National Parks (i) we measured the acorn production of Quercus mongolica, an overwhelmingly dominant species in South Korea, for 3 years (2017-2019), (ii) evaluated the spatial-temporal variation of acorn production, and (iii) analyzed the effects of oak- and site-related variables on the acorn production. Results: The annual acorn production of Q. mongolica increased 36 times from 1.2 g m-2 in 2017 to 43.2 g m-2 in 2018, and decreased to 16.7 g m-2 in 2019, resulting in an annual coefficient of variation of 104%. The coefficient of spatial variation was high and reached a maximum of 142%, and the tree size was the greatest influencing factor. That is, with an increase in tree size, acorn production increased significantly (2018 F = 16.3, p < 0.001; 2019 F = 8.2, p < 0.01). Elevation and slope also significantly affected the production in 2019. However, since elevation and tree size showed a positive correlation (r = 0.517, p < 0.001), the increase in acorn production with increasing elevation was possibly due to the effect of tree size. The acorn production of Odaesan for 3 years was 2.2 times greater than that of Seoraksan. This was presumed that there are more distribution of thick oak trees and more favorable site conditions such as deep soil A-layer depth, high organic matter, and slower slopes. Conclusion: As reported for other species of the genus Quercus, the acorn production of Q. mongolica showed large spatial and annual variations. The temporal variability was presumed to be a weather-influenced masting, while the spatial variability was mainly caused by oak tree size.

Effects of temperature on the growth and ingestion rates of the newly described mixotrophic dinoflagellate Yihiella yeosuensis and its two optimal prey species

  • Kang, Hee Chang;Jeong, Hae Jin;Lim, An Suk;Ok, Jin Hee;You, Ji Hyun;Park, Sang Ah;Lee, Sung Yeon;Eom, Se Hee
    • ALGAE
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    • v.35 no.3
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    • pp.263-275
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    • 2020
  • Water temperature is known to affect the growth and feeding of marine dinoflagellates. Each dinoflagellate species grows well at a certain optimal temperature but dies at very cold and hot temperatures. Thus, changes in water temperatures driven by global warming and extremely high or low temperatures can affect the distribution of dinoflagellates. Yihiella yeosuensis is a mixotrophic dinoflagellate that can feed on only the cryptophyte Teleaulax amphioxeia and the chlorophyte Pyramimonas sp. Furthermore, it grows fast mixotrophically but rarely grows photosynthetically. We explored the direct and indirect effects of water temperature on the growth and ingestion rates of Y. yeosuensis feeding on T. amphioxeia and the growth rates of T. amphioxeia and Pyramimonas sp. under 7 different water temperatures (5-35℃). Both the autotrophic and mixotrophic growth rates of Y. yeosuensis on T. amphioxeia were significantly affected by temperature. Under the mixotrophic and autotrophic conditions, Y. yeosuensis survived at 10-25℃, but died at 5℃ and ≥30℃. The maximum mixotrophic growth rate of Y. yeosuensis on T. amphioxeia (1.16 d-1) was achieved at 25℃, whereas the maximum autotrophic growth rate (0.16 d-1) was achieved at 15℃. The maximum ingestion rate of Y. yeosuensis on T. amphioxeia (0.24 ng C predator-1 d-1) was achieved at 25℃. The cells of T. amphioxeia survived at 10-25℃, but died at 5 and ≥30℃. The cells of Pyramimonas sp. survived at 5-25℃, but died at 30℃. The maximum growth rate of T. amphioxeia (0.72 d-1) and Pyramimonas sp. (0.75 d-1) was achieved at 25℃. The abundance of Y. yeosuensis is expected to be high at 25℃, at which its two prey species have their highest growth rates, whereas Y. yeosuensis is expected to be rare or absent at 5℃ or ≥30℃ at which its two prey species do not survive or grow. Therefore, temperature can directly or indirectly affect the population dynamics and distribution of Y. yeosuensis.

Initial responses of vegetation regeneration after strip clear cutting in secondary Korean red pine (Pinus densiflora) forest in Samcheok, Gangwon-do, South Korea (강원도 삼척 지역에서 소나무 이차림의 대상 벌채에 따른 초기 식생 재생 반응)

  • Jeong, Se-Yeong;Cho, Yong-Chan;Byun, Bong-Kyu;Kim, Hye-Jin;Bae, Kwan-Ho;Kim, Hyun-Seop;Kim, Jun-Soo
    • Korean Journal of Environment and Ecology
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    • v.29 no.5
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    • pp.785-790
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    • 2015
  • As an alternative to large-scale clear cutting silviculture, strip clear cutting (SC) is being considered as a system compatible with ecological conservation and forest regeneration. In South Korea, application and effectiveness of SCC in varying forest types were rarely found. In this study, under the subject of strip clear cutting lands of pinus densiflora forest at Samcheok, Gangwon-do Province, the developmental aspect of low vegetation prior to and after deforestation and the correlation between environmental factor and pine regeneration were analyzed. The cover rate of understory vegetation was appeared to be increased after deforestation and rapidly increased two years after deforestation, and it was evaluated to be affected by vigorous tree species and photophilic species. From the perspective of relative importance value, Quercus mongolica, Artemisia keiskeana, and Rubus crataegifolius that influence the cover rate showed the inclination of continuous growth. The diversity of species showed increment inclination as well due to introduction and settlement of early transient species. As a result of analyzing the correlation between vegetation and environmental factor and generation of pine tree size, the soil exposure rate, intensity of light, and canopy openness showed positive relationship, and the understory vegetation cover and woody debris cover rate showed negative relationship.