• Title/Summary/Keyword: prediction structure

Search Result 2,059, Processing Time 0.031 seconds

An Approach to Identify Single Nucleotide Polymorphisms in the Period Circadian Clock 3 (PER3) Gene and Proposed Functional Associations with Exercise Training in a Thoroughbred Horse (국내산 경주마의 주기성 시계 유전자(PER3) SNP 및 운동에 따른 기능적 식별 접근 가능성 제안)

  • Do, Kyoung-Tag;Cho, Byung-Wook
    • Journal of Life Science
    • /
    • v.25 no.11
    • /
    • pp.1304-1310
    • /
    • 2015
  • The period circadian clock gene 3 (PER3) plays a role in the mammalian circadian clocksystem. A regular exercise regime may affect the PER3 transcription in skeletal muscle. Although the effects of day length on circadian and circannual processes are well established in humans and mice, the influence of exercise on these processes in the horse has not been investigated. The present study investigated the expression of the PER3 gene following exercise in a thoroughbred breed of Korean horse. In addition, a comprehensive in silico nonsynonymous single nucleotide polymorphism (nsSNP) analysis of the horse PER3 gene and predicted effects of nsSNPs on proteins were examined. The expression of PER3 in skeletal muscle was significantly upregulated after exercise. Four nsSNPs were functionally annotated and analyzed by computational prediction. The total free energy and RMSD values of PER3 gene showed causative mutations. The results showed that nsSNP s395916798 (G72R) was associated with residues that have stabilizing effects on structure and function of PER3 gene. This study documented role of PER3 gene in phenotypic adaptation related to exercise in skeletal muscle. Further, the SNPs in PER3 could serve as useful biomarkers of early recovery after exercise in racehorses.

Modified Similitude Law for Pseudodynamic Test on Small-scale Steel Models (철골 축소모헝의 유사동적실험을 위한 수정된 상사법칙)

  • Kim, Nam-Sik;Kwak, Young-Hak;Chang, Sung-Pil
    • Journal of the Earthquake Engineering Society of Korea
    • /
    • v.7 no.6
    • /
    • pp.49-57
    • /
    • 2003
  • Although there are several experimental techniques to evaluate the seismic behavior and performance of civil structures, small-scale models in mast of physical tests, instead of prototypes or large-scale models, would be used due to a limitation on capacities of testing equipments. However, the inelastic seismic response prediction of small-scale models has some discrepancies inherently because the similitude law is generally derived in the elastic range. Thus, a special attention is required to regard the seismic behavior of small-scale models as one of prototypes. In this paper, differences between prototypes and small-scale models pseudodynamically tested on steel column specimens are investigated and an alternative to minimize them is suggested. In general, small-scale models could have the distorted stiffness induced from some experimental errors on test setup, steel fabrication and so on. Therefore, a modified similitude law considering both a scale factor for length and a stiffness ratio of small-scale model to prototype is proposed. Using the modified similitude law to compensate experimental errors, the pseudodynamic test results from modified small-scale model are much improved as compared with the results of prototype. According to the pseudodynamic test results of small-scale steel models, it can be concluded that the modified similitude law proposed could be effective in simulating the seismic response of prototype structures.

Long-term Performance Prediction of Piezoelectric Energy Harvesting Road Using a 3-Dimensional Finite Element Method (3차원 유한요소 해석을 통한 압전에너지 도로의 장기 공용성 예측)

  • Kim, Hyun Wook;Nam, Jeong-Hee;Choi, Ji Young
    • International Journal of Highway Engineering
    • /
    • v.19 no.5
    • /
    • pp.107-115
    • /
    • 2017
  • PURPOSES : The piezoelectric energy road analysis technology using a three-dimensional finite element method was developed to investigate pavement behaviors when piezoelectric energy harvesters and a new polyurethane surface layer were installed in field conditions. The main purpose of this study is to predict the long-term performance of the piezoelectric energy road through the proposed analytical steps. METHODS : To predict the stresses and strains of the piezoelectric energy road, the developed energy harvesters were embedded into the polyurethane surface layer (50 mm from the top surface). The typical type of triaxial dump truck loading was applied to the top of each energy harvester. In this paper, a general purpose finite element analysis program called ABAQUS was used and it was assumed that a harvester is installed in the cross section of a typical asphalt pavement structure. RESULTS : The maximum tensile stress of the polyurethane surface layer in the initial fatigue model occurred up to 0.035 MPa in the transverse direction when the truck tire load was loaded on the top of each harvester. The maximum tensile stresses were 0.025 MPa in the intermediate fatigue model and 0.013 MPa in the final fatigue model, which were 72% and 37% lower than that of the initial stage model, respectively. CONCLUSIONS : The main critical damage locations can be estimated between the base layer and the surface layer. If the crack propagates, bottom-up cracking from the base layer is the main cracking pattern where the tensile stress is higher than in other locations. It is also considered that the possibility of cracking in the top-down direction at the edge of energy harvester is more likely to occur because the material strength of the energy harvester is much higher and plays a role in the supporting points. In terms of long-term performance, all tensile stresses in the energy harvester and polyurethane layer are less than 1% of the maximum tensile strength and the possibility of fatigue damage was very low. Since the harvester is embedded in the surface layer of the polyurethane, which has higher tensile strength and toughness, it can assure a good, long-term performance.

Heat Transfer Analysis and Experiments of Reinforced Concrete Slabs Using Galerkin Finite Element Method (Galerkin 유한요소법을 이용한 철근콘크리트 슬래브의 열전달해석 및 실험)

  • Han, Byung-Chan;Kim, Yun-Yong;Kwon, Young-Jin;Cho, Chang-Geun
    • Journal of the Korea Concrete Institute
    • /
    • v.24 no.5
    • /
    • pp.567-575
    • /
    • 2012
  • A research was conducted to develop a 2-D nonlinear Galerkin finite element analysis of reinforced concrete structures subjected to high temperature with experiments. Algorithms for calculating the closed-form element stiffness for a triangular element with a fully populated material conductance are developed. The validity of the numerical model used in the program is established by comparing the prediction from the computer program with results from full-scale fire resistance tests. Details of fire resistance experiments carried out on reinforced concrete slabs, together with results, are presented. The results obtained from experimental test indicated in that the proposed numerical model and the implemented codes are accurate and reliable. The changes in thermal parameters are discussed from the point of view of changes of structure and chemical composition due to the high temperature exposure. The proposed numerical model takes into account time-varying thermal loads, convection and radiation affected heat fluctuation, and temperature-dependent material properties. Although, this study considered standard fire scenario for reinforced concrete slabs, other time versus temperature relationship can be easily incorporated.

Analytical Study on Hybrid Precast Concrete Beam-Column Connections (하이브리드 프리캐스트 보-기둥 접합부의 해석적 연구)

  • Choi, Chang-Sik;Kim, Seung-Hyun;Choi, Yun-Cheul;Choi, Hyun-Ki
    • Journal of the Korea Concrete Institute
    • /
    • v.25 no.6
    • /
    • pp.631-639
    • /
    • 2013
  • Non-linear finite element analysis for newly developed precast concrete details for beam-to-column connection which can be used in moderate seismic region was carried out in this study. Developed precast system is based on composite structure and which have steel tube in column and steel plate in beam. Improving cracking strength of joint under reversed cyclic loading, joint area was casted with ECC (Engineering Cementitious Composites). Since this newly developed precast system have complex sectional properties and newly developed material, new analysis method should be developed. Using embedded elements and models of non-linear finite element analysis program ABAQUS previously tested specimens were successfully analyzed. Analysis results show comparatively accurate and conservative prediction. Using finite element model, effect of axial load magnitude and flexural strength ratio were investigated. Developed connection have optimized performance under axial load of 10~20% of compressive strength of column. Plastic hinge was successfully developed with flexural strength ratio greater than 1.2.

The Analysis of Inquiry Scopes in High School General Science Textbook Based on the 6th Curriculum - Emphasizing the Analysis of Inquiry Experiment - (제 6차 교육과정에 따른 고등학교 공통과학 교과서의 탐구영역 분석 - 탐구 실험을 중심으로 -)

  • Park, Won-Hyuck;Kim, Eun-A
    • Journal of The Korean Association For Science Education
    • /
    • v.19 no.4
    • /
    • pp.528-541
    • /
    • 1999
  • In order to obtain data for developing an ideal science curriculum. four kinds of General Science textbooks based on the 6th curriculum were analyzed. Particularly inquiry activities were analyzed by Scientific Inquiry Evaluation Inventory(SIEI). The results are as follows: 1) The average number of inquiry activities in four kinds of textbooks is 115.5. And the number in each textbook is very diverse: textbook A contains 94 inquiry activities, textbook B 147. textbook C 100 and textbook D 121. 2) As for the number of inquiry activity scopes in four kinds of textbook. observation comes to 22, experiment 117, interpreting data 196, investigation 64, discussion 51, classification 4 and prediction 8. And then the conceptional inquiry activity is about 2.3 times as many as the inquiry experiment. 3) According to the analysis of each inquiry task by SIEI. textbook A has 268, textbook B 328, textbook C 207 and textbook D 304. 4) In the analysis of the structure of inquiry activity, the evaluation of the competition and cooperation scale shows more emphasis on common tasks. no pooled results(87.1 %). The discussion scale mostly consists of activities without discussion required among students(83.5%). The evaluation of openness scale shows more emphasis on activities with problems, procedures and answers presented(58.3%). In the evaluation of inquiry scope scale, the inquiry scope scale mostly has the activities to demonstrate or verify the contents of the text(66.9%). 5) As for the analysis of inquiry activities as a whole. The inquiry pyramid in four kinds of General Science textbooks shows the type I that emphasizes the inquiry activities in low level such as gathering and organizing data. The inquiry index in four kinds of textbooks is average 47.8, shows very high level (above 35).

  • PDF

Structural Behavior of the Reinforced Concrete Filled GFRP Tube (GFRP 보강 철근콘크리트 합성부재의 구조적 거동)

  • Lee, Seung-Sik;Joo, Hyung-Joong;Kang, In-Kyu;Yoon, Soon-Jong
    • Composites Research
    • /
    • v.23 no.4
    • /
    • pp.44-51
    • /
    • 2010
  • Recently, to solve the problems associated with the neutralization and corrosion of reinforced concrete compression members, the structural configurations such as CFFT (Concrete Filled GFRP Tube) and RCFFT (Reinforced Concrete Filled GFRR Tube) have been developed and applied to main members of civil engineering structure. These members can increase structural performance in terms of structural stability, ductility as well as chemical resistance compared with conventional concrete structural members. Many researches in numerous institutions to predict the load carrying capacity of the concrete compression member strengthened with FRP materials have been conducted and they have been suggested an equation for the prediction of the load carrying capacity of the members. Through the review of the research results, it was found that their results are similar each other. Moreover, it was also found that the results are not directly applicable to our specimens since the results are largely depended upon the member configurations. Also, since the accurate design criteria for the RC members strengthened with FRP such as RCFFT have not been established properly, relevant theoretical and experimental investigations must be conducted for the application to the practical structures. In this study, structural behavior of RCFFT was evaluated through compressive and quasi-static flexural tests in order to formulate design criteria for the structural design. In addition, the RCFFT members were also investigated to examine their confinement effect and the equations capable of estimating the compressive ultimate strength and flexural stiffness of the RCFFT members were proposed.

The Application of Adaptive Network-based Fuzzy Inference System (ANFIS) for Modeling the Hourly Runoff in the Gapcheon Watershed (적응형 네트워크 기반 퍼지추론 시스템을 적용한 갑천유역의 홍수유출 모델링)

  • Kim, Ho Jun;Chung, Gunhui;Lee, Do-Hun;Lee, Eun Tae
    • KSCE Journal of Civil and Environmental Engineering Research
    • /
    • v.31 no.5B
    • /
    • pp.405-414
    • /
    • 2011
  • The adaptive network-based fuzzy inference system (ANFIS) which had a success for time series prediction and system control was applied for modeling the hourly runoff in the Gapcheon watershed. The ANFIS used the antecedent rainfall and runoff as the input. The ANFIS was trained by varying the various simulation factors such as mean areal rainfall estimation, the number of input variables, the type of membership function and the number of membership function. The root mean square error (RMSE), mean peak runoff error (PE), and mean peak time error (TE) were used for validating the ANFIS simulation. The ANFIS predicted runoff was in good agreement with the measured runoff and the applicability of ANFIS for modelling the hourly runoff appeared to be good. The forecasting ability of ANFIS up to the maximum 8 lead hour was investigated by applying the different input structure to ANFIS model. The accuracy of ANFIS for predicting the hourly runoff was reduced as the forecasting lead hours increased. The long-term predictability of ANFIS for forecasting the hourly runoff at longer lead hours appeared to be limited. The ANFIS might be useful for modeling the hourly runoff and has an advantage over the physically based models because the model construction of ANFIS based on only input and output data is relatively simple.

Molecular Analysis of Alternative Transcripts of the Equine Cordon-Bleu WH2 Repeat Protein-Like 1 (COBLL1) Gene

  • Park, Jeong-Woong;Jang, Hyun-Jun;Shin, Sangsu;Cho, Hyun-Woo;Choi, Jae-Young;Kim, Nam-Young;Lee, Hak-Kyo;Do, Kyong-Tak;Song, Ki-Duk;Cho, Byung-Wook
    • Asian-Australasian Journal of Animal Sciences
    • /
    • v.28 no.6
    • /
    • pp.870-875
    • /
    • 2015
  • The purpose of this study was to investigate the alternative splicing in equine cordon-bleu WH2 repeat protein-like 1 (COBLL1) gene that was identified in horse muscle and blood leukocytes, and to predict functional consequences of alternative splicing by bioinformatics analysis. In a previous study, RNA-seq analysis predicted the presence of alternative spliced isoforms of equine COBLL1, namely COBLL1a as a long form and COBLL1b as a short form. In this study, we validated two isoforms of COBLL1 transcripts in horse tissues by the real-time polymerase chain reaction, and cloned them for Sanger sequencing. The sequencing results showed that the alternative splicing occurs at exon 9. Prediction of protein structure of these isoforms revealed three putative phosphorylation sites at the amino acid sequences encoded in exon 9, which is deleted in COBLL1b. In expression analysis, it was found that COBLL1b was expressed ubiquitously and equivalently in all the analyzed tissues, whereas COBLL1a showed strong expression in kidney, spinal cord and lung, moderate expression in heart and skeletal muscle, and low expression in thyroid and colon. In muscle, both COBLL1a and COBLL1b expression decreased after exercise. It is assumed that the regulation of COBLL1 expression may be important for regulating glucose level or switching of energy source, possibly through an insulin signaling pathway, in muscle after exercise. Further study is warranted to reveal the functional importance of COBLL1 on athletic performance in race horses.

Molecular characterization and expression pattern of a novel Keratin-associated protein 11.1 gene in the Liaoning cashmere goat (Capra hircus)

  • Jin, Mei;Cao, Qian;Wang, Ruilong;Piao, Jun;Zhao, Fengqin;Piao, Jing'ai
    • Asian-Australasian Journal of Animal Sciences
    • /
    • v.30 no.3
    • /
    • pp.328-337
    • /
    • 2017
  • Objective: An experiment was conducted to determine the relationship between the KAP11.1 and the regulation wool fineness. Methods: In previous work, we constructed a skin cDNA library and isolated a full-length cDNA clone termed KAP11.1. On this basis, we conducted a series of bioinformatics analysis. Tissue distribution of KAP11.1 mRNA was performed using semi-quantitative reverse transcription polymerase chain reaction (RT-PCR) analysis. The expression of KAP11.1 mRNA in primary and secondary hair follicles was performed using real-time PCR (real-time polymerase chain reaction) analysis. The expression location of KAP11.1 mRNA in primary and secondary hair follicles was performed using in situ hybridization. Results: Bioinformatics analysis showed that KAP11.1 gene encodes a putative 158 amino acid protein that exhibited a high content of cysteine, serine, threonine, and valine and has a pubertal mammary gland) structural domain. Secondary structure prediction revealed a high proportion of random coils (76.73%). Semi-quantitative RT-PCR showed that KAP11.1 gene was expressed in heart, skin, and liver, but not expressed in spleen, lung and kidney. Real time PCR results showed that the expression of KAP11.1 has a higher expression in catagen than in anagen in the primary hair follicles. However, in the secondary hair follicles, KAP11.1 has a significantly higher expression in anagen than in catagen. Moreover, KAP11.1 gene has a strong expression in inner root sheath, hair matrix, and a lower expression in hair bulb. Conclusion: We conclude that KAP11.1 gene may play an important role in regulating the fiber diameter.