• Journal of Ecology and Environment
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• v.38 no.3
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• pp.389-395
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• 2015

The composition of the Martes flavigula diet has been extensively studied, but little is known about its insect component. This study characterized the insect diet and insect nest materials in the feces of M. flavigula. A total of 952 fecal samples were collected in Jirisan National Park from January 2009 to November 2011, and 1379 species or taxonomic groups were identified. M. flavigula fed on insects (8.7%) and bee wax (5.0%), which comprised 2.9% and 4.4% of the dry weight of M. flavigula feces, respectively. A total of 12 insect species belonging to 8 families in 3 orders were identified. The most frequently found insects were Hymenoptera (frequency of occurrence, FO, 89.1), including Vespa simillima simillima (FO, 37.3) and Vespula koreensis koreensis (FO, 20.0). The Vespidae constituted the majority of the insect diet in autumn when the diversity of marten's prey was strongly reduced, probably because the numbers of social insects were sufficient for M. flavigula. In addition, the data suggest that M. flavigula attacks the nests of social wasps in late autumn when males do not have a venomous sting and new queens are less aggressive than workers. Bee wax appeared in all seasons and the highest rate was from spring to early summer. However, the remains of honeybees were not found in feces; thus, M. flavigula presumably eats honey but not honeybees.

• Journal of Ecology and Environment
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• v.39 no.1
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• pp.91-97
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• 2016

This paper reports the species of macromycetes collected in Mongolia: all the species are new to the area. Brief notes on taxonomy, ecology and distribution of the species are added. A total of 30 species of macromycetes were registered, 1 belonging to the division Ascomycota and 29 to the division Basidiomycota. It has been registered that 30 species belong to 25 genera, 17 families and occur in the flora fungus of Mongolia, until now. Specimen for 150 of samples macromycetes collected from June to August, 2015 in Tuv, Arkhangai and Huvsgul were enveloped. Macromycetes have been occured in 9 of 16 geographic regions. According to our studies 2 species in Khubsgul region, 2 species in Khangai region, 3 species in Khingan, 3 species in Dornod Mongol, 1 species in Khentei regions newly registered respectively. As a result of this work, determined 7 species (23%) of macromycetes in forest steppe and steppe regions and 23 species (77%) of them in forest region. The trophic structure for the fungal species is as follows: 2 species lignophite (7%), 4 species moss saprophyte (13%), 5 species soil saprophyte (17%), 15 species mycorrhiz (50%) of all species were respectively.

• Journal of Ecology and Environment
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• v.38 no.3
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• pp.367-374
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• 2015

The aim of this study was to assess the occurrence and foraging of social and other wasps and bees in Jirisan National Park (JNP, South Korea), in particular in an apiary. Sixty one traps were placed in the southwestern part of JNP to identify social wasps from July to September 2014, and the damage to the apiary caused by wasps or bees was observed once a month from May to December 2014 between 10 a.m. and 5 p.m. In total, 10 species of Vespidae were collected by trapping. Vespa crabro was the most abundant (245 individuals, 28.3%), followed by Vespa velutina (162 individuals, 18.7%). In the apiary, however, V. velutina was the most frequent species. V. velutina visited a maximum of 167 times a day in September, which corresponded to one visit in 2.5 min. Accordingly, these data are in line with the most serious impact of V. velutina on the apiaries in South Korea. V. simillima was the second most frequent species; both Vespa species hawked honeybees. Even though the occurrence of V. mandarinia was low, this species caused serious damage by mass slaughter of honeybees. The occurrence of V. crabro, V. analis and V. ducalis was quite low and their impact on honeybees was negligible. There have been few reports of V. dybowskii foraging for honeybees, but they are considered to be a new pest because their impact on apiaries is considerable. Most Vespa species attacked the apiary from June to October, with a maximum in September. However, V. velutina visited until November to early December. Vespula species are not more serious pests than Vespa species, but many adults were observed stealing honey from beehives. Polistes, Orancistrocerus, and Bombus species had no impact on honeybee colonies in the apiary.

• Korean Journal of Ichthyology
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• v.33 no.4
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• pp.205-216
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• 2021

Phylogenetic reconstruction based on one locus or a few loci can be misleading due to gene-tree/species-tree discordance. Species delimitation and intraspecific studies also often suffered from low resolution because of insufficient statistic power when few loci were used. Exon capture method is one of the most efficient way to collect genome-scale data, which can significantly augment studies that aimed to investigate patterns and histories of organisms at both intraspecific and high level. Here, I showed the advancement of shifting from single-gene method to genomic approach and the benefit of applying exon capture method comparing to alternative genomic techniques. Then, I explained the principle of exon capture method as well as providing detailed recommendations for applying this method. Finally, I demonstrated exon capture method using two applications and discussed future perspectives of this technology.

• Proceedings of the Korean Society of Crop Science Conference
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• 2017.06a
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• pp.135-135
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• 2017

The Gramene database (http://www.gramene.org) is a powerful online resource for agricultural researchers, plant breeders and educators that provides easy access to reference data, visualizations and analytical tools for conducting cross-species comparisons. Learn the benefits of using Gramene to enrich your lectures, accelerate your research goals, and respond to your organismal community needs. Gramene's genomes portal hosts browsers for 44 complete reference genomes, including crops and model organisms, each displaying functional annotations, gene-trees with orthologous and paralogous gene classification, and whole-genome alignments. SNP and structural diversity data, available for 11 species, are displayed in the context of gene annotation, protein domains and functional consequences on transcript structure (e.g., missense variant). Browsers from multiple species can be viewed simultaneously with links to community-driven organismal databases. Thus, while hosting the underlying data for comparative studies, the portal also provides unified access to diverse plant community resources, and the ability for communities to upload and display private data sets in multiple standard formats. Our BioMart data mining interface enable complex queries and bulk download of sequence, annotation, homology and variation data. Gramene's pathway portal, the Plant Reactome, hosts over 240 pathways curated in rice and inferred in 66 additional plant species by orthology projection. Users may compare pathways across species, query and visualize curated expression data from EMBL-EBI's Expression Atlas in the context of pathways, analyze genome-scale expression data, and conduct pathway enrichment analysis. Our integrated search database and modern user interface leverage these diverse annotations to facilitate finding genes through selecting auto-suggested filters with interactive views of the results.

• Animal cells and systems
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• v.16 no.1
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• pp.11-19
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• 2012

A major concern regarding the collection and storage of biodiversity information is the inefficiency of conventional taxonomic approaches in dealing with a large number of species. This inefficiency has increased the demand for automated, rapid, and reliable molecular identification systems and large-scale biological databases. DNA-based taxonomic approaches are now arguably a necessity in biodiversity studies. In particular, DNA barcoding using short DNA sequences provides an effective molecular tool for species identification. We constructed a large-scale database system that holds a collection of 5531 barcode sequences from 2429 Korean species. The Korea Barcode of Life database (KBOL, http://koreabarcode.org) is a web-based database system that is used for compiling a high volume of DNA barcode data and identifying unknown biological specimens. With the KBOL system, users can not only link DNA barcodes and biological information but can also undertake conservation activities, including environmental management, monitoring, and detecting significant organisms.

• Journal of Life Science
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• v.29 no.9
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• pp.1047-1054
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• 2019

Transposable elements (TEs) occupy approximately 45% of the human genome and can enter functional genes randomly. During evolutionary radiation, multiple copies of TEs are produced by duplication events. Those elements contribute to biodiversity and phylogenomics. Most of them are controlled by epigenetic regulation, such as methylation or acetylation. Every species contains their own specific mobile elements, and they are divided into DNA transposons and retrotransposons. Retrotransposons can be divided by the presence of a long terminal repeat (LTR). They show various biological functions, such as promoter, enhancer, exonization, rearrangement, and alternative splicing. Also, they are strongly implicated to genomic instability, causing various diseases. Therefore, they could be used as biomarkers for the diagnosis and prognosis of diseases such as cancers. Recently, it was found that TEs could produce miRNAs, which play roles in gene inhibition through mRNA cleavage or translational repression, binding seed regions of target genes. Studies of TE-derived miRNAs offer a potential for the expression of functional genes. Comparative analyses of different types of miRNAs in various species and tissues could be of interest in the fields of evolution and phylogeny. Those events allow us to understand the importance of TEs in relation to biological roles and various diseases.

• Korean Journal of Ecology and Environment
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• v.48 no.4
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• pp.229-237
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• 2015

This study aims to offer basic data to effectively preserve and manage pine forests using more precise pine forests' distribution status. In this regard, this study predicts the geographical distribution change of pine forests growing in South Korea, due to climate change, and evaluates the spatial distribution characteristics of pine forests by age. To this end, this study predicts the potential distribution change of pine forests by applying the MaxEnt model useful for species distribution change to the present and future climate change scenarios, and analyzes the effects of bioclimatic variables on the distribution area and change by age. Concerning the potential distribution regions of pine forests, the pine forests, aged 10 to 30 years in South Korea, relatively decreased more. As the area of the region suitable for pine forest by age was bigger, the decreased regions tend to become bigger, and the expanded regions tend to become smaller. Such phenomena is conjectured to be derived from changing of the interaction of pine forests by age from mutual promotional relations to competitive relations in the similar climate environment, while the regions suitable for pine forests' growth are mostly overlap regions. This study has found that precipitation affects more on the distribution of pine forests, compared to temperature change, and that pine trees' geographical distribution change is more affected by climate's extremities including precipitation of driest season and temperature of the coldest season than average climate characteristics. Especially, the effects of precipitation during the driest season on the distribution change of pine forests are irrelevant of pine forest's age class. Such results are expected to result in a reduction of the pine forest as the regions with the increase of moisture deficiency, where climate environment influencing growth and physiological responses related with drought is shaped, gradually increase according to future temperature rise. The findings in this study can be applied as a useful method for the prediction of geographical change according to climate change by using various biological resources information already accumulated. In addition, those findings are expected to be utilized as basic data for the establishment of climate change adaptation policies related to forest vegetation preservation in the natural ecosystem field.

• Korean Journal of Environment and Ecology
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• v.33 no.5
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• pp.506-514
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• 2019

Unlike natural ecosystems, the urban ecosystem proVides an interdependent enVironment in which wild organisms and urban people co-exist. Hornets (genus Vespa) appearing in urban green and parks haVe a positiVe effect on urban ecosystems, but they also cause ecosystem disserVices that cause physical and psychological discomforts to the urban people. Children's parks, for example, are Very popular among children and residents for easy accessibility, and hornets also use them as bases and habitats. HoweVer, there is still a lack of spatial analysis of habitats and appearance characteristics of hornets in children's parks. This study installed hornet traps in 27 children's parks in Cheonan from April to NoVember 2018 in consideration of the life cycle of hornets. We captured a total of fiVe Vespa species (Vespa crabro, V. analis, V. mandarinia, V. ducalis, and V. Velutina) for 32 weeks and analyzed the emergence of hornets in relation to the composition of seasonal characteristics, species characteristics, and enVironmental spatial information. We captured a total of 818 hornets during the study period. They included 290 V. analis (35.4%), 260 V. crabro (31.8%), 100 V. ducalis (12.1%), 87 V. mandaninia (10.6%), and 81 V. Velutina(9.9%). Most of the hornets showed a common feature that queen hornets were largely captured in May through June after they awake from hibernation, and the number of caught hornets decreased sharply beginning in mid-June, which was the cooperatiVe period. HoweVer, V. Velutina showed a seasonal specificity that more than 80% were captured beginning in the third week of October when other hornet species had already entered a decline phase. The analysis of the number of hornets caught in each spot in children's parks showed significant difference among the spots as 363 hornets (44.3%) were captured in top children's parks, and 35 hornets (4%) were captured in bottom children's parks. In particular, the mean NDVI (Normalized difference Vegetation index) of the top six children's parks was 0.79, and that of the bottom six children's parks was 0.38 (t=2.67*, *=p<0.05), indicating a significant difference. The frequency of capturing hornets was high when the ground around the children's parks was grass or bare land. This study is meaningful as a reference study that confirms the ecological characteristics of hornets appearing in green and parks in the city. We expect it to be a foundation for effectiVe urban green area management in the future.