• Korean Journal of Plant Resources
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• v.11 no.3
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• pp.335-344
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• 1998

Percicarp anatomy of Fagophrum was examined on the basis of 12 species and two subspecies to contribute to a better understanding of specific phylogenetic relationship within genus. Examined species have a similar mature pericarp structure, but differences among the species are found with respect to whether or not sclerotic cells are present, and what kind of is the sclerotic cell shape in theexocarp. By the comparisons with pericarp anatomical structure, they are classified into three groups. First clade is composed of F. esculentum , F. esculentum ssp. ancestralis and F. homotropicum ; second clade is consisted of F. tataricum, F. tataricum ssp. potanini and Fl cymosum ; third clade is composed of f. callianthum,F. capillatum, F. gracilipes, F. leptopodum, F.lineare, F. pleioramosum, F.statice and F.urophyllum. The phylogey based on pericarp characters was considerably consistent with ones proposed by previous authors. It also suggested that pericarp characters are useful informatino for deduceing phylogenetic phylogenetic realtionship within geneus Fagopyrum. On the other hand, morphological character evolution indicated that there are tow synapomorphies in genus. There,it was suggested that these species having selfing and homostylous characters are evolved form heterostylous and ourcrossing species.

• Proceedings of the National Institute of Ecology of the Republic of Korea
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• v.3 no.4
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• pp.221-226
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• 2022

A filarial nematode was found in a blood sample of an Anas falcata individual collected in South Korea in 2018. Phylogenetic analysis based on partial cytochrome C oxidase subunit I (COI) sequences placed the nematode as a novel genus of the family Onchocercidae and as closely related to Mansonella species, Chandlerella quiscali, and filarial nematodes recently reported in avian species. However, different phylogenetic relationship was observed in the NADH dehydrogenase subunit 5 and 12S rRNA-based phylogenetic trees, which might indicate the filarial nematode found in this study was not defined to belong to the known specific genera of the family Onchocercidae. The screening of 105 additional avian blood samples retrieved only one 12S rRNA-targeting polymerase chain reaction (PCR)-positive sample, which indicates that filarial nematode infection is rare in wild birds or that it occurs below the detection limit of PCR in blood samples. Nevertheless, considering the recent findings about ancient interactions between birds and human pathogenic filarial nematodes and their pathogenic potential in several avian species, additional exploration of novel filarial nematodes in wild birds remains necessary.

• Korean Journal of Plant Resources
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• v.35 no.6
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• pp.805-819
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• 2022

The taxonomic status and phylogenetic relationship of Opuntia monacantha Haw. f. jejuensis J. K. Kim ex Y. S. Yang (Jejubaiknyuncho), which is native to southern coast of Jeju Island, Korea was analyzed using DNA markers obtained from Korean Opuntia. Opuntia stricta Haw., O. humifusa Raf., and O. humifusa Raf. f. jeollaensis E. J. Kim and S. S. Whang, native or cultivated in Korea, have no stripes on the back of tepals and have a purple pulp, whereas O. monacantha f. jejuensis has purple stripes on the back of tepals and a greenish-yellow pulp color. Opuntia monacantha has purple stripes on both the front and back of its tepals, whereas stripes appear only on the back of tepals of O. monacantha f. jejuensis. Opuntia monacantha f. jejuensis was assigned to Elatae series in phylogenetic analysis and was found to be more closely related to O. monacantha subsp. arechavaletae (Speg.) Guiggi, compared with O. monacantha at a molecular level. Based on its phylogenetic and morphological differences from O. monacantha and O. monacantha subsp. arechavaletae, which are native or have been cultivated in Jeju areas, O. monacantha f. jejuensis was named as a new forma in this study.

• Mycobiology
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• v.51 no.2
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• pp.109-113
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• 2023

Auricularia is one of the broadly cultivated edible mushrooms in Korea. Most of the Korean Auricularia strains used for cultivation and breeding are known as A. auricula-judae. Recently, this species has been reported to belong to a species complex. Therefore, this study was carried out to genetically clarify the bred and cultivated Korean A. auricula-judae strains. The internal transcribed spacer (ITS) and IGS1 rDNA region sequences were determined from 10 A. auricula-judae strains by PCR and sequencing. Variation in the nucleotide sequence and sequence length of the two rDNA regions were found among the seven A. auricula-judae strains. A maximum-likelihood (ML) phylogenetic tree based on the ITS sequences clearly placed all the 10 Korean A. auricula-judae strains in the A. heimuer clade of the A. auriculajudae complex. A. heimuer is diverged from A. auricula-judae. An ML phylogenetic tree based on the IGS1 sequences revealed the close relationship between Korean A. heimuer strains to Chinese A. heimuer strains. But each strain could be distinguishable by the IGS1 sequence. Furthermore, progeny strains in the seven Korean strains could be differentiated from their parental strains by the IGS1 sequence based phylogenetic tree. Our results are expected to be used to complement the distinction of domestic Auricularia cultivars.

• Asian-Australasian Journal of Animal Sciences
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• v.22 no.1
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• pp.13-19
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• 2009

In the present study, genetic analyses of diversity and differentiation were performed on four breeds of Indian zebu cattle (Bos indicus). In total, 181 animals belonging to Ponwar, Kherigarh, Gangatiri and Kenkatha breeds were genotyped for 20 cattle specific microsatellite markers. Mean number of alleles observed per locus (MNA) varied between 5.75 (Kenkatha) to 6.05 (Kherigarh). The observed and expected heterozygosity for the breeds varied from 0.48 (Gangatiri) to 0.58 (Kherigarh) and 0.65 (Kenkatha) to 0.70 (Kherigarh), respectively. $F_{IS}$ estimates of all the breeds indicated significant deficit of heterozygotes being 28.8%, 25.9%, 17.7% and 17.7% for Gangatiri, Ponwar, Kherigarh and Kenkatha, respectively. The $F_{ST}$ estimates demonstrated that 10.6% was the average genetic differentiation among the breeds. Nei's genetic distance DA and Cavalli- Sforza and Edwards Chord distance ($D_C$) and the phylogenetic tree constructed from these reflected the close genetic relationship of Gangatiri and Kenkatha, whereas Ponwar appears to be more distant.

• ALGAE
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• v.27 no.2
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• pp.83-94
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• 2012

The taxonomic distinctiveness and cosmopolitan distributions of the red algae $Gelidium$ $crinale$ and $G.$ $pusillum$ remain unclear. Both species were first described in Devon in southwestern England; namely in Ilfracome for $G.$ $crinale$ and Sidmouth for $G.$ $pusillum$. We analyzed mitochondrial $cox$1 and plastid $rbc$L sequences from specimens collected in East Asia, Australia, Europe and North America. In all phylogenetic analyses of $cox$1 and $rbc$L sequences, $G.$ $crinale$ was distinct from congeners of the genus. The analyses also revealed a sister relationship with the $G.$ $coulteri$ and $G.$ $capense$ clade. Nineteen $cox$1 haplotypes were identified for $G.$ $crinale$, and they were likely geographically structured. Despite the distinctiveness in both $cox$1 and $rbc$L datasets, the sister relationship of $G.$ $pusillum$ in the genus was not resolved. Our $cox$1 and $rbc$L datasets indicate that $G.$ $crinale$ is a cosmopolitan species, found in East Asia, Australia, Europe and North America, while the distribution of $G.$ $pusillum$ is restricted to Europe and Atlantic North America. Our results suggest that infraspecific classification of $G.$ $pusillum$ may be abandoned.

• Korean Journal of Ichthyology
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• v.12 no.1
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• pp.14-19
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• 2000

The sequences of two fragments of 18s ribosomal DNA were determined to elucidate relationship between Pungitius sinensis and P. kaibarae. The proportion of G+C pair is 54.85% to 55.15% in P. kaibarae populations and 52.76% in P. sinensis. Number of substitutions ranges from 10~18 among the populations of P. kaibarae and up to 165 between P. sinensis and P. kaibarae. The value of sequence divergence were 0.0118~0.0195 among the populations of P. kaibarae and 0.2136~0.2306 between P. sinensis and P. kaibarae. The result of pairwise comparison of the sequences indicate that phylogenetic relationship between P. sinensis and P. kaibarae was differentiated to specific level.

• The Journal of the Korean Society for Microbiology
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• v.35 no.1
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• pp.49-60
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• 2000

ITSI-5.8S-ITSII rDNA region was amplified from the reference strains and clinical isolates with ITS1 and ITS4 primers. These primers amplified DNA fragments of 550 bp in Microsporum audouinii and Trichophyton violaceum, 700 bp in Microsporum gypseum, Trichophyton mentagrophytes, Trichophyton rubrum, and Trichophyton tonsurans, and 750 bp in Microsporum ferreugineum and Microsporum canis. The restriction enzyme patterns of PCR products digested with 13 restriction enzyme including PstI were distint among the genera, whereas identical in the same species. Examination of the ITS (Internal Transcribed Spacers)1 nucleotide sequence revealed that there was the genetic difference in each genera and species. Phylogenetic relationship among each species showed that the Trichophyton mentagrophytes was more closely related Trichophyton tonsurans than Trichophyton rubrum, and Microsporum gypseum was less related than Microsporum spp..

• Journal of fish pathology
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• v.16 no.1
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• pp.1-12
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• 2003

RT-PCR method was applied to detect and clone the nucleocapsid protein (N) gene and glycoprotein (G) gene for sequencing 5 Korean VHSV isolates from cultured olive flounder, Paralichthys olivaceus. Phylogenetic analysis was performed to investigate their relationship with the VHSV strains described previously and isolated from different geographical area. Generally, VHSV strains were separated phylogenetically according to the major geographical area of isolation: Genogroup I (American type), Genogroup Il (British Isles) and Genogroup ill (European type). This study revealed that all 5 Korean VHSV isolates were belonged to Genogroup I and closely related to Japanese Obama25 type.

• ALGAE
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• v.19 no.3
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• pp.153-160
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• 2004

The intergeneric relationship of Staurastrum complex including genus Arthrodesmus and Xanthidium was studied on the basis of mitochondrial coxⅢ sequence variation. Teiling's suggestion that Staurodesmus was an independent genus apart from genus Staurastrum, Arthrodesmus and Cosmarium was also reevaluated. The phylogeny inferred from coxⅢ gene was not consistent with morphological characteristics of Staurastrum complex. Genus Staurastrum was closely related to genus Xanthidium in the phylogenetic analysis of coxⅢ, but distant to genus Staurodesmus. The taxonomic treatment of genus Staurodesmus as an independent entity could not be determined, because Staurodesmus did not firm a monophyletic Glade. Therefore, genus Staurodesmus could not be treated as an independent genus as Prescott et al. (1982) claimed.