• Title/Summary/Keyword: optimal algorithm

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A Study of Flexible Protein Structure Alignment Using Three Dimensional Local Similarities (단백질 3차원 구조의 지역적 유사성을 이용한 Flexible 단백질 구조 정렬에 관한 연구)

  • Park, Chan-Yong;Hwang, Chi-Jung
    • The KIPS Transactions:PartB
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    • v.16B no.5
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    • pp.359-366
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    • 2009
  • Analysis of 3-dimensional (3D) protein structure plays an important role of structural bioinformatics. The protein structure alignment is the main subjects of the structural bioinformatics and the most fundamental problem. Protein Structures are flexible and undergo structural changes as part of their function, and most existing protein structure comparison methods treat them as rigid bodies, which may lead to incorrect alignment. We present a new method that carries out the flexible structure alignment by means of finding SSPs(Similar Substructure Pairs) and flexible points of the protein. In order to find SSPs, we encode the coordinates of atoms in the backbone of protein into RDA(Relative Direction Angle) using local similarity of protein structure. We connect the SSPs with Floyd-Warshall algorithm and make compatible SSPs. We compare the two compatible SSPs and find optimal flexible point in the protein. On our well defined performance experiment, 68 benchmark data set is used and our method is better than three widely used methods (DALI, CE, FATCAT) in terms of alignment accuracy.

Real-Time Digital Auto-Focusing Using A-Priori Estimated Point Spread Functions (점 확산 함수 데이터베이스를 이용한 실시간 디지털 자동초점)

  • Yoo Yoon-Jong;Lee Jung-Soo;Shin Jeong-Ho;Paik Joon-Ki
    • Journal of the Institute of Electronics Engineers of Korea SP
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    • v.43 no.5 s.311
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    • pp.1-11
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    • 2006
  • This paper presents a digital auto-focusing method using a priori estimated point-spread-functions (PSF) database. The proposed algorithm efficiently removes out-of-focus blur in a degraded input image by selecting the optimal PSF from the database. The database consists of optical characteristics of image formation system. The PSF selection Process is performed based on a novel focusing measure. The proposed method includes a spatially adaptive filter for removing both noise and ringing artifacts. Experimental results show that the proposed method efficiently removes out-of-focus blur using significantly reduced computational load compared with the existing method.

Performance Improvement in Speech Recognition by Weighting HMM Likelihood (은닉 마코프 모델 확률 보정을 이용한 음성 인식 성능 향상)

  • 권태희;고한석
    • The Journal of the Acoustical Society of Korea
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    • v.22 no.2
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    • pp.145-152
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    • 2003
  • In this paper, assuming that the score of speech utterance is the product of HMM log likelihood and HMM weight, we propose a new method that HMM weights are adapted iteratively like the general MCE training. The proposed method adjusts HMM weights for better performance using delta coefficient defined in terms of misclassification measure. Therefore, the parameter estimation and the Viterbi algorithms of conventional 1:.um can be easily applied to the proposed model by constraining the sum of HMM weights to the number of HMMs in an HMM set. Comparing with the general segmental MCE training approach, computing time decreases by reducing the number of parameters to estimate and avoiding gradient calculation through the optimal state sequence. To evaluate the performance of HMM-based speech recognizer by weighting HMM likelihood, we perform Korean isolated digit recognition experiments. The experimental results show better performance than the MCE algorithm with state weighting.

Three Dimensional Euclidean Minimum Spanning Tree for Connecting Nodes of Space with the Shortest Length (공간 노드들의 최단연결을 위한 3차원 유클리드 최소신장트리)

  • Kim, Chae-Kak;Kim, In-Bum
    • Journal of the Korea Society of Computer and Information
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    • v.17 no.1
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    • pp.161-169
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    • 2012
  • In general, Euclidean minimum spanning tree is a tree connecting input nodes with minimum connecting cost. But the tree may not be optimal when applied to real world problems of three dimension. In this paper, three dimension Euclidean minimum spanning tree is proposed, connecting all input nodes of 3-dimensional space with minimum cost. In experiments for 30,000 input nodes with 100% space ratio, the tree produced by the proposed method can reduce 90.0% connection cost tree, compared with the tree by two dimension Prim's minimum spanning tree. In two dimension plane, the proposed tree increases 251.2% connecting cost, which is pointless in 3-dimensional real world. Therefore, the proposed method can work well for many connecting problems in real world space of three dimensions.

Resource Allocation Algorithm for Throughput Enhancement in IEEE 802.11e (IEEE 802.11e의 전송률 향상을 위한 자원할당 알고리듬)

  • Joung, Soo-Kyoung;Park, In-Kap
    • Journal of the Institute of Electronics Engineers of Korea CI
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    • v.47 no.4
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    • pp.63-70
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    • 2010
  • In IEEE 802.11e system providing differentiated services, there exist some problems as follows; collision probability increase due to the increase in the number of nodes by employing CSMA/CA transmission mode, transmission speed declining tendency towards the worst of it, which is caused by different transmission mode and decrease of TCP transmission rate as the result of the link occupancy by UDP when TCP shares the link with UDP by the TCP’s flow control characteristic. In this thesis, the initial minimum and maximum CW are set differently according to the number of connected nodes in the network to avoid collisions and TXOP is adjusted according to the channel state, in which ACs with low priority but better channel state will get gradually more chances to transmit leading to optimal channel capacity. Also, by allowing higher priority for ACK frames which control the TCP transmission, the flow control becomes better because that reduces the channel occupancy by UDP flow, and by this, fair transmission is obtained from the result of the more fair transmission and active resource allocation.

Improvement of the Sphere Decoding Complexity through an Adaptive OSIC-SD System (Adaptive OSIC-SD 시스템을 통한 SD 복호기 복잡도 개선)

  • Portugal, Sherlie;Yoon, Gil-Sang;Seo, Chang-Woo;Hwang, In-Tae
    • Journal of the Institute of Electronics Engineers of Korea TC
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    • v.48 no.3
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    • pp.13-18
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    • 2011
  • Sphere Decoding (SD) is a decoding technique able to achieve the Maximum Likelihood (ML) performance in fading environments; nevertheless, the main disadvantage of this technique is its high complexity, especially in poor channel conditions. In this paper, we present an adaptive hybrid algorithm which reduces the conventional Sphere Decoder's complexity and keeps the ML performance. The system called Adaptive OSIC-SD modifies its operation based on Signal to Noise Ratio (SNR) information and achieves an optimal performance in terms of Bit Error Rate (BER) and complexity. Through simulations, we probe that the proposed system maintains almost the same bit error rate performance of the conventional SD, and exhibits a lower, quasi-constant complexity.

Optimization of the Number of Active Antennas for Energy-Efficiency in the MIMO Broadcast Channel (다중 사용자 다중 안테나 하향링크 채널에서 에너지 효율 향상을 위한 기지국 활성 안테나 수 최적화 기법)

  • Choi, Seungkyu;Kim, Dohoon;Lee, Chungyong
    • Journal of the Institute of Electronics and Information Engineers
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    • v.51 no.5
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    • pp.29-34
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    • 2014
  • We introduce a number of antenna optimization problem for the zero-forcing beamforming (ZFBF) scheme to enhance energy-efficiency (EE) of the multiple-input-multiple-output broadcast channel. For proposed optimization problem, we assume an instantaneous channel gain of the ZFBF scheme as an average channel gain, given by $N_a-K+1$, in order to reduce a computational complexity of finding the number of active antennas $N_a$. Then, we convert a fractional-form objective function into a subtractive-form, and find a solution of $N_a$ and the maximum EE by an iterative process. Simulation results show that the maximum EE value obtained by proposed algorithm is almost identical to the optimal EE value by the exhaustive search method.

Texture Image Generation Technique Considering Storage Optimization of 3D-Spatial Data (3차원 공간자료의 저장 공간 최적화를 고려한 텍스쳐 생성기법 연구)

  • Jin, Gi-Ho;Ha, Sung-Ryong
    • Journal of Digital Contents Society
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    • v.15 no.4
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    • pp.457-464
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    • 2014
  • Recently, interests in space information data are increasing due to the initiation of spatial information open platform service by the Ministry of Land, Infrastructure and Transport. The purpose of this study is optimizing management and storing of the texture data, one kinds of 3D-spatial data. First, extract 3D-spatial data through the aerial triangulation and 3D-writing using raw image taken with the Multi-directional aerial camera and the vertical aerial camera. And develop the method to create single texture data and related technique by align and place corresponding 3D-spatial data to optimal storage space. Through experiment, the results show effect of 8 times of storage capacity reduction compared to existing single-file storage method, additionally, new method can improve file management efficiency in comparison with multiple file storage method. The results of this study can be cornerstone of three-dimensional space information management when dealing with bulk data, and utilizations will be enhanced through the further studies and algorithm improvement.

Extended ROHC Compression Algorithm for The Efficient Data Traffic Transmission in the IPv6 (차세대 IP체계에서 효율적인 데이터 전송을 위한 확장된 ROHC 알고리즘)

  • Kim Kyung-shin;Kang Moon-sik
    • Journal of the Korea Society of Computer and Information
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    • v.10 no.5 s.37
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    • pp.187-198
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    • 2005
  • In this paper, we propose the enhanced header compression scheme for the efficient data traffic transmission in Ipv6 networks. The bandwidth of wireless links and IP networks will probably be limited due to properties of the physical medium and regulatory limits on the use of frequencies for radio communications. That is major cause of user throughput reduction. Therefore, We discuss the IPHC(RFC2507) and ROHC(RFC3095) scheme. IPHC is simple header compression scheme and ROHC is enhanced header compression that have fast optimal recovery scheme. We have studied the enhanced header compression scheme in ROHC. We will show that indication of compression context values preventing from packet losses can provide the fast recovery of compression state. Computer simulations show that the proposed scheme has better performance than the previous one.

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The Analysis of Knowledge Structure using Co-word Method in Quality Management Field (동시단어분석을 이용한 품질경영분야 지식구조 분석)

  • Park, Man-Hee
    • Journal of Korean Society for Quality Management
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    • v.44 no.2
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    • pp.389-408
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    • 2016
  • Purpose: This study was designed to analyze the behavioral change of knowledge structures and the trends of research topics in the quality management field. Methods: The network structure and knowledge structure of the words were visualized in map form using co-word analysis, cluster analysis and strategic diagram. Results: Summarizing the research results obtained in this study are as follows. First, the word network derived from co-occurrence matrix had 106 nodes and 5,314 links and its density was analyzed to 0.95. Average betweenness centrality of word network was 2.37. In addition, average closeness centrality and average eigenvector centrality of word network were 0.01. Second, by applying optimal criteria of cluster decision and K-means algorithm to word co-occurrence matrix, 106 words were grouped into seven clusters such as standard & efficiency, product design, reliability, control chart, quality model, 6 sigma, and service quality. Conclusion: According to the results of strategic diagram analysis over time, the traditional research topics of quality management field related to reliability, 6 sigma, control chart topics in the third quadrant were revealed to be declined for their study importance. Research topics related to product design and customer satisfaction were found to be an important research topic over analysis periods. Research topic related to management innovation was emerging state and the scope of research topics related to process model was extended to research topics with system performance. Research topic related to service quality located in the first quadrant was analyzed as the key research topic.