• 제목/요약/키워드: one-step integration

검색결과 103건 처리시간 0.024초

출아효모에서 다양한 이종 유전자의 안정적 동시발현을 위한 방법의 비교 (Comparison of Methods for Stable Simultaneous Expression of Various Heterologous Genes in Saccharomyces cerevisiae)

  • 정회명;김연희
    • 한국미생물·생명공학회지
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    • 제47권4호
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    • pp.667-672
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    • 2019
  • 본 연구는 출아효모 Saccharomyces cerevisiae을 이용해 이종 유전자(heterologous gene)를 효모염색체내에 도입하여 안정적으로 발현하기 위한 시스템의 비교에 대해서 연구하였다. 반복적으로 사용할 수 있는 Cre/loxP system의 이용을 위해 C. glabrata 유래 유전자를 선택마커로 사용하였고, universal pRS-CMT vector를 이용한 4종의 유전자(XYLP, XYLB, GRE3 및 XYL2 유전자)를 모델 유전자로 cloning하였다. 구축된 pRS-XylP, pRS-XylB, pRS-Gre3 및 pRS-Xyl2 plasmid를 이용한 4번의 sequential integration을 통해 효모염색체내에 도입된 4종의 유전자를 순차적으로 발현시킬 수 있었다. 또한 4종의 유전자 발현 cassette를 동시에 가지는 pRS-PBG2 plasmid에 의한 one-step integration을 통해서, 도입될 유전자들의 순서를 정할 수 있었으며 각 유전자들의 동시발현을 안정적으로 유지할 수 있었다. 결론적으로 본 연구에서 사용한 4종의 유전자들의 염색체내 동시 integration 및 발현을 위해서는 one-step integration이 효과적임을 확인하였으며, 적절한 유전자 도입방법을 통해 산업적으로 유용한 생물시스템의 손쉬운 육종이 가능하리라 기대한다.

구조동역학에서의 오차 추정과 시간간격 제어 알고리즘 (Error Estimation and Adaptive Time Stepping Procedure for Structural Dynamics)

  • 장인식
    • 한국자동차공학회논문집
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    • 제4권4호
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    • pp.190-200
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    • 1996
  • Step-by-step time integration methods are widely used for solving structural dynamics problem. One difficult yet critical choice an analyst must make is to decide an appropriate time step size. The choice of time step size has a significant effect on solution accuracy and computational expense. The objective of this research is to derive error estimate for newly developed time integration method and develop automatic time step size control algorithm for structural dynamics. A formula for computing error tolerance is derived based on desired period resolution. An automatic time step size control strategy is proposed based on a normalized local error estimate for the generalized-α method. Numerical examples demonstrate the developed strategy satisfies general design criteria for time step size control algorithm for dynamic problem.

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GLONASS 측위를 위한 위성좌표 산출 정확도 향상 방안 (Accuracy Analysis of GLONASS Orbit Determination Strategies for GLONASS Positioning)

  • 이호석;박관동;김혜인
    • 한국측량학회지
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    • 제28권6호
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    • pp.573-578
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    • 2010
  • 위성항법시스템에서 정확한 위성궤도결정 기술은 측위 정확도 향상의 필수적인 조건이다. 이 연구에서는 GLONASS의 방송궤도력과 4차 Runge-Kutta 수치적분법을 이용하여 위성좌표를 결정하였으며, 적분간격과 적분시간에 따른 위성궤도의 정확도를 비교하였다. 적분간격에 따른 위성궤도 정확도분석결과, 적분간격이 l초일 때와 300초일 때의 3차원 RMS 오자의 차이가 3cm에 불과한 반면 처리시간은 100배 이상 향상되었다. 적분시간에 따른 위성좌표의 3차원 RMS 오차는 적분시간이 30분, 150분, 300분일 때 각각 8.3m, 187.3m, 661.5m로 나타났으며, 이를 통해 적분시간을 짧게 할수록 정확도가 향상되는 것을 확인하였다. 따라서 이 연구에서는 GLONASS 측위를 위한 위성좌표 결정의 정확도 향상을 위해 적분시간을 최소화할 수 있는 Forward와 Backward 적분을 적용하는 방안을 제안하였으며, 이와 같은 방법을 사용할 경우 5m이하의 위성좌표 산출 정확도를 확보할 수 있다.

Estimation of Spatial Dependence with GEE

  • Lee, Yoon-Dong;Choi, Hye-Mi
    • 한국통계학회:학술대회논문집
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    • 한국통계학회 2003년도 춘계 학술발표회 논문집
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    • pp.269-273
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    • 2003
  • We consider an efficient parametric estimation method of spatial dependence in weak stationary processes. Spatial dependence is modeled through variogram and correlogram. Most of parametric estimation methods of correlogram use two step method; nonparametric estimation and parametric integration. We bind these two steps into one step by using GEE method instead of least squares type optimization. Our one step method is more efficient statistically and gives a clear interpretation of related concepts used in traditional two step methods.

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열탄소성 구성방정식 적분을 위한 새로운 알고리즘 (A New Algorithm for the Integration of Thermal-Elasto-Plastic Constitutive Equation)

  • 이동욱;신효철
    • 대한기계학회논문집
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    • 제18권6호
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    • pp.1455-1464
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    • 1994
  • A new and efficient algorithm for the integration of the thermal-elasto-plastic constitutive equation is proposed. While it falls into the category of the return mapping method, the algorithm adopts the three point approximation of plastic corrector within one time increment step. The results of its application to a von Mises-type thermal-elasto-plastic model with combined hardening and temperature-dependent material properties show that the accurate iso-error maps are obtained for both angular and radial errors. The accuracy achieved is because the predicted stress increment in a single step calculation follows the exact value closely not only at the end of the step but also through the whole path. Also, the comparison of the computational time for the new and other algorithms shows that the new one is very efficient.

Houbolt 직접적분법의 시간증분에 관한 연구 (Study on the Time Increments in the Houblot Direct Integration Method)

  • 손주리;신중호
    • 한국기계연구소 소보
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    • 통권18호
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    • pp.55-66
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    • 1988
  • Many direct integration methods are used for numerical analyses of dynamic motion. In these methods, the governing equations of a dynamic system are integrated successively using a step-by-step numerical integration procedure. Time derivatives in the equations are generally approximated using difference formulas involving one or more increments of the time. Time increment has closely relationship with the accuracy of the motion analysis. In this paper, a 4th order Houbolt direct integration method is derived. For a spring-mass system, the motion of the system are analyzed from the 3rd order Houbolt and the 4th order Houbolt approaches respectively. Finally the paper proposes the optimal time-increment based on the accuracy of numerical analyses.

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RecurDyn을 이용한 동적 해석 시 마찰모델에 따른 적분 안정성 및 정확성 연구 (Study on the Integration Stability and the Accuracy of Some Friction Models for the Dynamic Analysis Using Recurdyn)

  • 유홍희;이준희
    • 한국소음진동공학회논문집
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    • 제18권11호
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    • pp.1111-1117
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    • 2008
  • During the dynamic analysis of a system, the Coulomb friction law is emploved to calculate the friction force. Since the static friction coefficient is only employed during the zero relative velocity, it is impractical to employ the coefficient during the dynamic analysis. To calculate the static friction force, therefore, some friction models have been developed. In this study, the integration stability and the accuracy of the models are investigated with some numerical examples. The effect of time step size during the numerical integration is also investigated. The numerical study shows that the friction model employed for most commercial codes is not as good as the one proposed in this study.

On the natural frequencies and mode shapes of a multiple-step beam carrying a number of intermediate lumped masses and rotary inertias

  • Lin, Hsien-Yuan;Tsai, Ying-Chien
    • Structural Engineering and Mechanics
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    • 제22권6호
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    • pp.701-717
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    • 2006
  • In the existing reports regarding free transverse vibrations of the Euler-Bernoulli beams, most of them studied a uniform beam carrying various concentrated elements (such as point masses, rotary inertias, linear springs, rotational springs, spring-mass systems, ${\ldots}$, etc.) or a stepped beam with one to three step changes in cross-sections but without any attachments. The purpose of this paper is to utilize the numerical assembly method (NAM) to determine the exact natural frequencies and mode shapes of the multiple-step Euler-Bernoulli beams carrying a number of lumped masses and rotary inertias. First, the coefficient matrices for an intermediate lumped mass (and rotary inertia), left-end support and right-end support of a multiple-step beam are derived. Next, the overall coefficient matrix for the whole vibrating system is obtained using the numerical assembly technique of the conventional finite element method (FEM). Finally, the exact natural frequencies and the associated mode shapes of the vibrating system are determined by equating the determinant of the last overall coefficient matrix to zero and substituting the corresponding values of integration constants into the associated eigenfunctions, respectively. The effects of distribution of lumped masses and rotary inertias on the dynamic characteristics of the multiple-step beam are also studied.

An Error Embedded Runge-Kutta Method for Initial Value Problems

  • Bu, Sunyoung;Jung, WonKyu;Kim, Philsu
    • Kyungpook Mathematical Journal
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    • 제56권2호
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    • pp.311-327
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    • 2016
  • In this paper, we propose an error embedded Runge-Kutta method to improve the traditional embedded Runge-Kutta method. The proposed scheme can be applied into most explicit embedded Runge-Kutta methods. At each integration step, the proposed method is comprised of two equations for the solution and the error, respectively. These solution and error are obtained by solving an initial value problem whose solution has the information of the error at each integration step. The constructed algorithm controls both the error and the time step size simultaneously and possesses a good performance in the computational cost compared to the original method. For the assessment of the effectiveness, the van der Pol equation and another one having a difficulty for the global error control are numerically solved. Finally, a two-body Kepler problem is also used to assess the efficiency of the proposed algorithm.

Dynamic responses of a beam with breathing cracks by precise integration method

  • Cui, C.C.;He, X.S.;Lu, Z.R.;Chen, Y.M.;Liu, J.K.
    • Structural Engineering and Mechanics
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    • 제60권5호
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    • pp.891-902
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    • 2016
  • The beam structure with breathing cracks subjected to harmonic excitations was modeled by FEM based on Euler-Bernoulli theory, and a piecewise dynamical system was deduced. The precise integration method (PIM) was employed to propose an algorithm for analyzing the dynamic responses of the deduced system. This system was first divided into linear sub-systems, between which there are switching points resulted from the breathing cracks. The inhomogeneous terms due to the external excitations were tackled by introducing auxiliary variables to express the harmonic functions, hence the sub-systems are homogeneous. The PIM was then applied to solve the homogeneous sub-systems one by one. During the procedures, a predictor-corrector algorithm was presented to determine the switching points accurately. The presented method can provide solutions with an accuracy to a magnitude of $10^{-12}$ compared with exact solutions obtained by the theories of ordinary differential equations. The PIM results are much more accurate than Newmark ones with the same time step. Moreover, it is found that the PIM can maintain a high level of accuracy even when the time step increases within a relatively wide range.