• Title/Summary/Keyword: molecular distribution

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Benthic dinoflagellates in Korean waters

  • Lim, An Suk;Jeong, Hae Jin
    • ALGAE
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    • v.36 no.2
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    • pp.91-109
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    • 2021
  • The occurrence of benthic dinoflagellates, many of which are known to be toxic, is a critical concern for scientists, government officers, and people in the aquaculture, dining, and tourism industries. The interest in these dinoflagellates in countries with temperate climate is increasing because tropical or subtropical species introduced into temperate waters by currents are able to survive the winter season in the new environment owing to global warming. Recently, several species from the benthic dinoflagellate genera Amphidinium, Coolia, Ostreopsis, Gambierdiscus, and Prorocentrum have been reported in the waters of the South and East Sea of Korea. The advent of the benthic dinoflagellates in Korean waters is especially important because raw or slightly cooked seaweeds, which may harbor these benthic dinoflagellates, as well as raw fish, which can be potentially intoxicated by phytotoxins produced by some of these benthic dinoflagellates, are part of the daily Korean diet. The recent increase in temperature of Korean coastal waters has allowed for the expansion of benthic dinoflagellate species into these regions. In the present study, we reviewed the species, distribution, and toxicity of the benthic dinoflagellates that have been reported in Korean waters. We also provided an insight into the ecological and socio-economic importance of the occurrence of benthic dinoflagellates in Korean waters.

Kinetic Biodegradation of Polycyclic Aromatic Hydrocarbons for Five Different Soils under Aerobic Conditions in Soil Slurry Reactors

  • Ha, Jeong Hyub;Choi, Suk Soon
    • Applied Chemistry for Engineering
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    • v.32 no.5
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    • pp.581-588
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    • 2021
  • In this study, soil slurry bioreactors were used to treat soils containing 16 polycyclic aromatic hydrocarbons (PAHs) for 35 days. Five different soil samples were taken from manufactured gas plant (MGP) and coal tar disposal sites. Soil properties, such as carbon content and particle distribution, were measured. These properties were significantly correlated with percent biodegradation and degradation rate. The cumulative amount of PAH degraded (P), degradation rate (Km), and lag phase (𝜆) constants of PAHs in different MGP soils for 16 PAHs were successfully obtained from nonlinear regression analysis using the Gompertz equation, but only those of naphthalene, anthracene, acenaphthene, fluoranthene, chrysene, benzo[k]fluoranthene, benzo(a)pyrene, and benzo(g,h,i)perylene are presented in this study. A comparison between total non-carcinogenic and carcinogenic PAHs indicated higher maximum amounts of PAH degraded in the former than that in the latter owing to lower partition coefficients and higher water solubilities (S). The degradation rates of total non-carcinogenic compounds for all soils were more than four times higher than those of total carcinogenic compounds. Carcinogenic PAHs have the highest partitioning coefficients (Koc), resulting in lower bioavailability as the molecular weight (MW) increases. Good linear relationships of Km, 𝜆, and P with the octanol-water partitioning coefficient (Kow), MW, and S were used to estimate PAH remaining, lag time, and biodegradation rate for other PAHs.

Color Strength and Fastness of Pigment Ink with Various Binder Monomer Compositions (바인더의 공중합체 조성에 따른 안료잉크의 발색성 및 견뢰도 연구)

  • Kwon, Woong;Lee, Minkyu;Jeong, Euigyung;Bae, Jin-Seok
    • Textile Coloration and Finishing
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    • v.30 no.4
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    • pp.256-263
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    • 2018
  • The binder polymers for digital textile printing(DTP) pigment inks were prepared using miniemulsion polymerization with various monomer compositions to study effects of monomer compositions on particle size distribution, average molecular weight, Tg, and color strength and rubbing fastness of the dyed fabrics with the prepared binder based pigment ink. The monomers used were MMA(Methyl methacrylate), BA(Butyl acrylate), MAA(Methacrylic acid), NMA(N-methylol acrylamide), NEA(N-ethylol acrylamide) and the ratios of the monomers were changed. The particle size was the smallest with 136nm when the MMA to BA weight ratio was 4:16 and the largest with 290nm when the MMA, BA, MAA, NEA ratio was 2.5:17:0.25:0.25. However, the glass transition temperature was lowest with $-41.90^{\circ}C$ and the color strength and rubbing fastness of the resulting sample were the best when the MMA, BA, MAA, NEA ratio was used. This suggested that the introduction of the NEA monomer to the binder polymer for the pigment ink could be an efficient way to enhance the rubbing fastness of the DTP pigment inks present.

Genomic Variations of Rice Regenerants from Tissue Culture Revealed by Whole Genome Re-Sequencing

  • Qin, Yang;Shin, Kong-Sik;Woo, Hee-Jong;Lim, Myung-Ho
    • Plant Breeding and Biotechnology
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    • v.6 no.4
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    • pp.426-433
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    • 2018
  • Plant tissue culture is a technique that has invariably been used for various purposes such as obtaining transgenic plants for crop improvement or functional analysis of genes. However, this process can be associated with a variety of genetic and epigenetic instabilities in regenerated plants, termed as somaclonal variation. In this study, we investigated mutation spectrum, chromosomal distributions of nucleotide substitution types of single-nucleotide polymorphisms (SNPs) and insertions/deletions (InDels) by whole genome re-sequencing between Dongjin and Nipponbare along with regenerated plants of Dongjin from different induction periods. Results indicated that molecular spectrum of mutations in regenerated rice against Dongjin genome ranged from $9.14{\times}10^{-5}$ to $1.37{\times}10^{-4}$ during one- to three-month callus inductions, while natural mutation rate between Dongjin and Nipponbare genomes was $6.97{\times}10^{-4}$. Non-random chromosome distribution of SNP and InDel was observed in both regenerants and Dongjin genomes, with the highest densities on chromosome 11. The transition to transversion ratio was 2.25 in common SNPs of regenerants against Dongjin genome with the highest C/T transition frequency, which was similar to that of Dongjin against Nipponbare genome.

Thermoelastoplastic response of FGM linearly hardening rotating thick cylindrical pressure vessels

  • Ebrahimi, Tayebeh;Nejad, Mohammad Zamani;Jahankohan, Hamid;Hadi, Amin
    • Steel and Composite Structures
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    • v.38 no.2
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    • pp.189-211
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    • 2021
  • An analytical solution is presented to analyze the thermoelastoplastic response of a rotating thick-walled cylindrical pressure vessel made of functionally graded material (FGM). The analysis is based on Tresca's yield condition, its associated flow rule and linear strain hardening material behaviour. The uncoupled theory of thermoelasticity is used, and the plane strain condition is assumed. The material properties except for Poisson's ratio, are assumed to vary nonlinearly in the radial direction. Elastic, partially plastic, fully plastic, and residual stress states are investigated. The heat conduction equation for the one-dimensional problem in cylindrical coordinates is used to obtain temperature distribution in the vessel. It is assumed that the inner surface is exposed to an airstream and that the outer surface is exposed to a uniform heat flux. Tresca's yield criterion and its associated flow rule are used to formulate six different plastic regions for a linearly hardening condition. All these stages are studied in detail. It is shown that the thermoelastoplastic stress response of a rotating FGM pressure vessel is affected significantly by the nonhomogeneity of the material and temperature gradient. The results are validated with those of other researchers for appropriate values of the system parameters and excellent agreement is observed.

Symplocarpus koreanus (Araceae; Orontioideae), a new species based on morphological and molecular data

  • LEE, Joon Seon;KIM, Seon-Hee;KIM, Yongsung;KWON, Youl;YANG, JiYoung;CHO, Myong-Suk;KIM, Hye-Been;LEE, Sangryong;MAKI, Masayuki;KIM, Seung-Chul
    • Korean Journal of Plant Taxonomy
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    • v.51 no.1
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    • pp.1-9
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    • 2021
  • Symplocarpus koreanus (Araceae; Orontioideae) from Korea is described as new. Symplocarpus koreanus has long been considered to be conspecific with S. renifolius in Japan, but phylogenetic, morphological, and cytological data indicate its taxonomic distinction. Compared to S. renifolius, S. koreanus has a much smaller spathe and more spherical spadix with fewer, smaller flowers. Previous phylogenetic studies also suggested that S. koreanus is more closely related to nonthermogenic S. nipponicus than to S. renifolius in Japan. Like its nonthermogenic sister species, S. nipponicus, in Korea and Japan, S. koreanus is diploid (2n = 2x = 30), while S. renifolius in Japan is tetraploid (2n = 4x = 60). A detailed species description, geographical distribution, major morphological differences between the species and a dichotomous key to the species in eastern Asia are provided.

A Study on Heating Characteristics of Li-ion Battery Applicated Single-phase Immersion Cooling Technology (단상계 침지냉각 기술이 적용된 Li-ion계 배터리 발열특성에 관한 연구)

  • Kim, Woonhak;Kang, Seokwon;Shin, Giseok
    • Journal of the Society of Disaster Information
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    • v.18 no.1
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    • pp.163-172
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    • 2022
  • Purpose: To secure efficient thermal management technology for Li-ion batteries, the applicability of the system applied with single-phase immersion technology was checked through an experiment. Method: Using JH3 pouch cells produced by LG-Chem, Korea, A 14S2P module was manufactured and immersed in a vegetable-based cooling fluid produced by Cargill, USA, and then charged and discharged at a rate of 0.3C to 1C to check the heat distribution. Result: It was possible to manage and there was no change in the molecular structure of the immersion solution. Conclusion: It was confirmed that the immersion cooling method can be applied to the thermal management of Li-ion batteries.

Unrecorded Soil Fungi Isolated from the Dokdo, Korea

  • Eo, Ju-Kyeong;Park, Eunsu;Choi, Jae-Wook;Shin, Hyun-Chul;Choi, Seung-Se;Park, So-Yeon
    • Proceedings of the National Institute of Ecology of the Republic of Korea
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    • v.3 no.3
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    • pp.172-177
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    • 2022
  • Two unrecorded fungi, Diaporthe perseae and Fusarium falciforme, were isolated from soil sampled from Dokdo in Korea. There have been many reports of Diaporthe sp. and Fusarium sp. in mainland Korea but none of them have reported in Dokdo so far. We used the morphological features and two molecular markers including the internal transcribed spacer and translation elongation factor 1-α region to compare and analyze these species with the closely related taxa. As a result, we confirmed that these fungi were unrecorded soil fungi in Korea. Then, the cultural and morphological characteristics such as the conidia of these two fungal species could be clarified. These results are expected to help us to understand the distribution of fungi in Dokdo and manage the Dokdo Island Natural Reserve.

In-silico characterization and structure-based functional annotation of a hypothetical protein from Campylobacter jejuni involved in propionate catabolism

  • Mazumder, Lincon;Hasan, Mehedi;Rus’d, Ahmed Abu;Islam, Mohammad Ariful
    • Genomics & Informatics
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    • v.19 no.4
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    • pp.43.1-43.12
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    • 2021
  • Campylobacter jejuni is one of the most prevalent organisms associated with foodborne illness across the globe causing campylobacteriosis and gastritis. Many proteins of C. jejuni are still unidentified. The purpose of this study was to determine the structure and function of a non-annotated hypothetical protein (HP) from C. jejuni. A number of properties like physiochemical characteristics, 3D structure, and functional annotation of the HP (accession No. CAG2129885.1) were predicted using various bioinformatics tools followed by further validation and quality assessment. Moreover, the protein-protein interactions and active site were obtained from the STRING and CASTp server, respectively. The hypothesized protein possesses various characteristics including an acidic pH, thermal stability, water solubility, and cytoplasmic distribution. While alpha-helix and random coil structures are the most prominent structural components of this protein, most of it is formed of helices and coils. Along with expected quality, the 3D model has been found to be novel. This study has identified the potential role of the HP in 2-methylcitric acid cycle and propionate catabolism. Furthermore, protein-protein interactions revealed several significant functional partners. The in-silico characterization of this protein will assist to understand its molecular mechanism of action better. The methodology of this study would also serve as the basis for additional research into proteomic and genomic data for functional potential identification.

First record of juvenile of the mirror butterflyfish, Chaetodon speculum Cuvier, 1831 (Perciformes: Chaetodontidae) collected from Pohang, Korea (한국 포항에서 채집된 나비고기과(Chaetodontidae) 어류 1미기록종, Chaetodon speculum의 유어 출현)

  • LEE, Yu-Jin;SONG, Young-Sun;KIM, Jin-Koo
    • Journal of the Korean Society of Fisheries and Ocean Technology
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    • v.57 no.4
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    • pp.374-381
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    • 2021
  • A newly recorded chaetodontid species, Chaetodon speculum Cuvier, 1831 was collected in July, 2021 from Pohang, Korea. Its body color is yellow with black stripe across the eyes and a large spot occupying one fourth of the upper part of the body. C. speculum is very similar to congeneric species, C. zanzibarensis, but it can be distinguished by the size of the spot, shape of the lateral line, number of longitudinal line scales and geographic distribution. C. speculum is readily identified between post-larval stage and adult stage because of its similar external shape. Molecular analysis based on mitochondrial DNA COI sequences showed our specimen perfectly matched C. speculum. Therefore, we propose the new Korean name, "Heug-jeom-na-bi-go-gi" for C. speculum.