• 제목/요약/키워드: linkage map

검색결과 191건 처리시간 0.031초

QTL Analysis of Soybean Seed Weight Using RAPD and SSR Markers

  • Chung, Jong-Il;Ko, Mi-Suk;Kang, Jin-Ho
    • Plant Resources
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    • 제3권3호
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    • pp.184-193
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    • 2000
  • Soybean [Glycine max (L.) Merr.] seed weight is a important trait in cultivar development. Objective of this study was to identify and confirm quantitative trait loci (QTLs) for seed weight variation in the F2 and F2:3 generations. QTLs for seed weight were identified in F2 and F2:3 generations using interval mapping (MapMaker/QTL) and single-factor analysis of variance (ANOVA). In the F2 plant generation (i.e., F3 seed), three markers, OPL9a, OPM7a, and OPAC12 were significantly (P<0.01) associated with seed weight QTLs. In the F2:3 plant row generation (i.e., F4 seed), five markers, OPA9a, OPG19, OPL9b, OPP11, and Sat_085 were significantly (P<0.01) associated with seed weight QTLs. Two markers, OPL9a and OPL9b were significantly (P<0.05) associated with seed weight QTLs in both generations. Two QTLs on USDA soybean linkage group C1 and R were identified in both F2 and F2:3 generations using interval mapping. The linkage group C1 QTL explained 16% of the variation in seed weight in both generations, and the linkage group R QTL explained 39% and 41% of the variation for F2 and F2:3 generation, respectively. The linkage group C2 QTL identified in F2:3 generation explained 14.9% of variation. Linkage groups C1, C2 and R had previously been identified as harbouring seed size QTLs. The consistency of QTLs across generations and populations indicates that marker-assisted selection is possible in a soybean breeding program.

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Development of Molecular Markers for Xanthomonas axonopodis Resistance in Soybean

  • Kim Ki-Seung;Van Kyujung;Kim Moon Young;Lee Suk-Ha
    • 한국작물학회지
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    • 제49권5호
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    • pp.429-433
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    • 2004
  • A single recessive gene, rxp, controls the bacterial leaf pustule (BLP) resistance in soybean and in our previous article, it has been mapped on linkage group (LG) D2 of molecular genetic map of soybean. A total of 130 recombinant inbred lines (RILs) from a cross between BLP-resistant SS2-2 and BLP-susceptible Jangyeobkong were used to identify molecular markers linked to rxp. Fifteen simple sequence repeat (SSR) markers on LG D2 were screened to construct a genetic map of rxp locus. Only four SSR markers, Satt135, Satt372, Satt448, and Satt486, showed parental polymorphisms. Using these markers, genetic scaffold map was constructed covering 26.2cM. Based on the single analysis of variance, Satt372 among these four SSR markers was the most significantly associated with the resistance to BLP. To develop new amplified fragment length polymorphism (AFLP) marker linked to the resistance gene, bulked segregant analysis (BSA) was employed. Resistance and susceptible bulks were made by pooling equal amount of genomic DNAs from ten of each in the segregating population. A total of 192 primer combinations were used to identify specific bands to the resistance, selecting three putative AFLP markers. These AFLP markers produced the fragment present in SS2-2 and the resistant bulk, and not in Jangyeobkong and the susceptible bulk. Linkage analysis revealed that McctEact97 $(P=0.0004,\;R^2=14.67\%)$ was more significant than Satt372, previously reported as the most closely linked marker.

Microsatellite와 SNP Marker를 이용한 한국재래닭의 유전적 연관지도 작성 (Construction of Genetic Linkage Map using Microsatellite and SNP Markers in Korean Native Chicken)

  • 서동원;박희복;최누리;진실;유채경;술타나;허강녕;조철훈;이준헌
    • 한국가금학회지
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    • 제42권1호
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    • pp.77-86
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    • 2015
  • 닭은 전체 염기서열의 길이가 포유류에 비해 3분의 1 정도로 비교적 작은 유전체를 가지고 있기 때문에 인간의 주요한 단백질 공급원으로써의 중요성뿐 아니라, 동물의 형질연관 유전자 연구 및 발생유전학적 연구에 좋은 모델 동물이다. 따라서 본 연구에서는 한국재래닭 이용성을 증대시키는 목적으로 한국재래닭의 유전적 구조를 이해하고, 다양한 응용연구의 토대를 마련하기 위하여 131개의 microsatellite (MS) 마커와 8개의 SNP 마커 유전자형을 이용하여 한국재래닭의 유전적 연관지도를 작성하였다. 그 결과, 한국재래닭의 유전 연관지도의 총 길이는 2729.4 cM으로 확인되었고, 연관지도 작성에 사용된 각 마커 간의 거리는 평균 19.64 cM으로 계산되었다. 모든 마커의 유전적 거리와 물리적 거리의 순서는 GGA8의 ADL0278과 MCW0351의 물리적 거리의 순서가 바뀐 결과만 제외하고, 이전의 연구결과와 매우 유사한 결과를 나타내었다. 또한 macrochromosome과 microchromosome의 재조합률을 비교해 본 결과, macrochromosome이 microchromosome보다 3.7배 크게 나타나, 이전에 보고와 유사한 결과를 나타내었다. 유전 연관지도의 암수에 따른 차이에서는 GGA1, 7, 13, 27의 네 개의 염색체에서 암, 수의 성별에 따른 차이를 나타내었다. 각 마커의 평균 대립유전자 수와 이형접합도(Hexp), 다형성(PIC) 수치는 각각 5.5, 0.63, 0.58로 유전적 지도를 작성하기에 충분하 다형성을 가진 것을 확인하였다. 따라서 본 연구의 결과는 한국재래닭의 유전적 구조를 이해하고, 유전체 QTL 연구와 같은 응용연구에 기초자료로써 유용하게 사용될 수 있을 것으로 사료된다.

Studies on the Small Body Size Mouse Developed by Mutagen N-Ethyl-N-nitrosourea

  • Zhang, Qian-Kun;Cho, Kyu-Hyuk;Cho, Jae-Woo;Cha, Dal-Sun;Park, Han-Jin;Yoon, Seok-Joo;Zhang, ShouFa;Song, Chang-Woo
    • Toxicological Research
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    • 제24권1호
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    • pp.69-78
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    • 2008
  • Mutant mouse which show dwarfism has been developed by N-ethyl-N-nitrosourea (ENU) mutagenesis using BALB/c mice. The mutant mouse was inherited as autosomal recessive trait and named Small Body Size (SBS) mouse. The phenotype of SBS mouse was not apparent at birth, but it was possible to distinguish mutant phenotype from normal mice 1 week after birth. In this study, we examined body weight changes and bone mineral density (BMD), and we also carried out genetic linkage analysis to map the causative gene(s) of SBS mouse. Body weight changes were observed from birth to 14 weeks of age in both affected (n = 30) and normal mice (n = 24). BMD was examined in each five SBS and normal mice between 3 and 6 weeks of age, respectively. For the linkage analysis, we produced backcross progeny [(SBS${\times}$C57BL/6J) $F_1{\times}$ SBS] $N_2$ mice (n = 142), and seventy-four microsatellite markers were used for primary linkage analysis. Body weight of affected mice was consistently lower than that of the normal mice, and was 43.7% less than that of normal mice at 3 weeks of age (P < 0.001). As compared with normal mice at 3 and 6 weeks of age, BMD of the SBS mice was significantly low. The results showed 15.5% and 14.1 % lower in total body BMD, 15.3% and 8.7% lower in forearm BMD, and 29.7% and 20.1% lower in femur BMD, respectively. The causative gene was mapped on chromosome 10. The map order and the distance between markers were D10Mit248 - 2.1 cM - D10Mit51 - 4.2 cM - sbs - 0.7 cM - D10Mit283 - 1.4cM - D10Mit106 - 11.2cM - D10Mit170.

지식활동의 관계식별을 위한 연계형 분류체계에 관한 연구 - 연구-기술-산업과 연구-전공-취업 연계 - (A New Model for Connecting the Classification Systems of Knowledge Activities - Linking Research-Technology-Industry and Research-Major-Job -)

  • 설성수;송충한;노환진
    • 기술혁신학회지
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    • 제10권3호
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    • pp.531-554
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    • 2007
  • 본고는 그간 독립적으로 존재해 왔던 학문분류 연구분류 기술분류 산업분류 전공분류 및 취업 분류와 같은 지식활동과 관련된 분류체계를 상호 연계시켜 종합적으로 보는 새로운 모형을 제시하고 그를 구체적으로 구현하는 방법을 다룬 것이다. 중 분야 이상의 의미를 갖는 학문분류와 소 분야 이하의 의미를 갖는 연구분류를 통합시킨 학문/연구분류는, 자체가 연구분야와 적용분야로 구성되는 2차원형이지만, 한편으로는 다양한 기술분류와 산업분류로 연계되고, 다른 한편으로는 전공(교육)분류와 취업분류로 연계된다. 연계시키는 방법은 두 개 이상의 분류체계를 동시에 기재하도록 하고, 그러한 기재를 허용하는 정보시스템과 데이터베이스를 갖추고, 필요에 따라 몇 개의 분류체계를 선택하여 동시에 사용하면 된다. 본고는 새로운 분류체계를 보이고자 한 것이지만 기본적인 의도는 분류체계를 넘어선다. 지식사회의 기본적인 활동인 지식활동을 종합적으로 파악하기 위한 수단을 강구하고자 한 것이다.

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Chromosomal Mapping of the Gene Encoding Deoxycytidine-Cytidine Deaminase in Bacillus subtilis

  • Song, Bang-Ho;Jan Neuhard
    • 한국미생물생명공학회:학술대회논문집
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    • 한국미생물생명공학회 1986년도 추계학술대회
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    • pp.512.2-512
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    • 1986
  • A mutant of bacillus subtilis with a defective cdd gene encoding deoxycytidine-cytidine deaminase(EC 3.5.4.5.) has been characterized genetically. The genetic lesion causing the altered deoxycytidine-cytidine deaminase, cdd, was mapped at 225 min on the linkage map of B.subtilis by AR9 transduction Transductional analysis of the cdd region established the gene order as trp-lys-dnaE-cdd-aroD. The cdd gene was linked 72% with the aroD and 20% with the lys.

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Proteomics 기술의 개발 및 응용 (Development and Applications of Proteomics Technology)

  • 이지원;이은규
    • KSBB Journal
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    • 제16권2호
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    • pp.99-106
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    • 2001
  • Proteomics research includes identification and quantitation of single protein and/or protein complex, profiling of protein expression changes in response to biological perturbations, characterization of protein functions and interactions, and elucidation the linkage between proteins and diseases. In this review paper, recent developments in the basic technologies involved in the proteomics research such as 2-dimensional PAGE and mass spectrometry are discussed. Also, the application areas of proteomics technology such as protein expression mapping and cell map proteomics are introduced with the focus on new drug development.

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